Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold13G06650 Striga asiatica HOM05D000684 ORTHO05D000688 1.1e-74 283.1 139 100.0
CiPaw.03G154600 Carya illinoinensis HOM05D000684 ORTHO05D000688 3.6e-12 75.5 57 61.4
CARHR126890 Cardamine hirsuta HOM05D000684 ORTHO05D000688 1.4e-11 73.6 57 61.4
ClCG01G009780 Citrullus lanatus HOM05D000684 ORTHO05D000688 1.4e-11 73.6 57 61.4
MELO3C021715.2 Cucumis melo HOM05D000684 ORTHO05D000688 1.4e-11 73.6 57 61.4
Sed0013780 Sechium edule HOM05D000684 ORTHO05D000688 1.4e-11 73.6 57 61.4
Sed0017890 Sechium edule HOM05D000684 ORTHO05D000688 1.4e-11 73.6 57 61.4
SGA_v2.0_scaffold7G03792 Striga asiatica HOM05D000684 ORTHO05D000688 1.8e-11 73.2 51 76.5
Aa31LG5G4610 Aethionema arabicum HOM05D000684 ORTHO05D000688 2.4e-11 72.8 46 69.6
AL4G28470 Arabidopsis lyrata HOM05D000684 ORTHO05D000688 2.4e-11 72.8 46 71.7
AT2G32950 Arabidopsis thaliana HOM05D000684 ORTHO05D000688 2.4e-11 72.8 46 71.7
BcaB02g10508 Brassica carinata HOM05D000684 ORTHO05D000688 2.4e-11 72.8 46 71.7
BcaC02g11360 Brassica carinata HOM05D000684 ORTHO05D000688 2.4e-11 72.8 46 71.7
A05p12680 Brassica napus HOM05D000684 ORTHO05D000688 2.4e-11 72.8 46 71.7
C04p16610 Brassica napus HOM05D000684 ORTHO05D000688 2.4e-11 72.8 46 71.7
BolC4t23211H Brassica oleracea HOM05D000684 ORTHO05D000688 2.4e-11 72.8 46 71.7
BraA05t20206Z Brassica rapa HOM05D000684 ORTHO05D000688 2.4e-11 72.8 46 71.7
Carub.0004s1438 Capsella rubella HOM05D000684 ORTHO05D000688 2.4e-11 72.8 46 71.7
Thhalv10016348m.g Eutrema salsugineum HOM05D000684 ORTHO05D000688 2.4e-11 72.8 46 71.7
Nitab4.5_0001198g0320 Nicotiana tabacum HOM05D000684 ORTHO05D000688 2.4e-11 72.8 58 63.8
Sp4g15310 Schrenkiella parvula HOM05D000684 ORTHO05D000688 2.4e-11 72.8 46 71.7
CsaV3_1G045940 Cucumis sativus L. HOM05D000684 ORTHO05D000688 3.1e-11 72.4 46 67.4
Lalb_Chr17g0347231 Lupinus albus HOM05D000684 ORTHO05D000688 3.1e-11 72.4 46 69.6
Nitab4.5_0000143g0520 Nicotiana tabacum HOM05D000684 ORTHO05D000688 3.1e-11 72.4 58 63.8
Migut.M01361 Erythranthe guttata HOM05D000684 ORTHO05D000688 5.3e-11 71.6 57 64.9
TWI18G0734 Tripterygium wilfordii HOM05D000684 ORTHO05D000688 5.3e-11 71.6 57 63.2
PGSC0003DMG400013334 Solanum tuberosum HOM05D000684 ORTHO05D000688 6.9e-11 71.2 46 73.9
MSTRG.13124 Avicennia marina HOM05D000684 ORTHO05D000688 9.0e-11 70.9 57 63.2
Solyc11g011980.3 Solanum lycopersicum HOM05D000684 ORTHO05D000688 9.0e-11 70.9 46 71.7
Sopen11g006790 Solanum pennellii HOM05D000684 ORTHO05D000688 9.0e-11 70.9 46 71.7
THA.LOC104801011 Tarenaya hassleriana HOM05D000684 ORTHO05D000688 9.0e-11 70.9 46 67.4
Prupe.4G013500 Prunus persica HOM05D000684 ORTHO05D000688 1.2e-10 70.5 57 61.4
QL08p030433 Quercus lobata HOM05D000684 ORTHO05D000688 1.2e-10 70.5 57 57.9
MELO3C019731.2 Cucumis melo HOM05D000684 ORTHO05D000688 2.0e-10 69.7 57 59.6
CsaV3_6G015450 Cucumis sativus L. HOM05D000684 ORTHO05D000688 2.0e-10 69.7 46 67.4
MSTRG.14620 Avicennia marina HOM05D000684 ORTHO05D000688 2.6e-10 69.3 57 61.4
Manes.12G068900 Manihot esculenta HOM05D000684 ORTHO05D000688 2.6e-10 69.3 46 69.6
Peaxi162Scf00063g00311 Petunia axillaris HOM05D000684 ORTHO05D000688 2.6e-10 69.3 57 61.4
ATR1128G039 Amborella trichopoda HOM05D000684 ORTHO05D000688 3.4e-10 68.9 57 61.4
Cc09_g01080 Coffea canephora HOM05D000684 ORTHO05D000688 3.4e-10 68.9 57 63.2
Hma1.2p1_0298F.1_g117350 Hydrangea macrophylla HOM05D000684 ORTHO05D000688 3.4e-10 68.9 57 61.4
Sabra04G0001200 Salix brachista HOM05D000684 ORTHO05D000688 3.4e-10 68.9 57 61.4
PSO541G1463 Papaver somniferum HOM05D000684 ORTHO05D000688 4.4e-10 68.6 57 61.4
PSO675G4498 Papaver somniferum HOM05D000684 ORTHO05D000688 4.4e-10 68.6 57 61.4
Actinidia10794 Actinidia chinensis HOM05D000684 ORTHO05D000688 5.8e-10 68.2 57 57.9
Actinidia26878 Actinidia chinensis HOM05D000684 ORTHO05D000688 5.8e-10 68.2 57 59.6
ClCG02G018100 Citrullus lanatus HOM05D000684 ORTHO05D000688 5.8e-10 68.2 57 57.9
LjContig00029g0026581 Lotus japonicus HOM05D000684 ORTHO05D000688 5.8e-10 68.2 46 63.0
PGSC0003DMG400013893 Solanum tuberosum HOM05D000684 ORTHO05D000688 5.8e-10 68.2 60 58.3
TAR629G2523 Trochodendron aralioides HOM05D000684 ORTHO05D000688 5.8e-10 68.2 57 59.6
Aqoxy1G02898 Aquilegia oxysepala HOM05D000684 ORTHO05D000688 7.6e-10 67.8 57 61.4
DCAR_012918 Daucus carota HOM05D000684 ORTHO05D000688 7.6e-10 67.8 56 58.9
Nn1g07310 Nelumbo nucifera HOM05D000684 ORTHO05D000688 7.6e-10 67.8 57 61.4
Solyc12g005950.2 Solanum lycopersicum HOM05D000684 ORTHO05D000688 7.6e-10 67.8 57 59.6
Sopen12g001900 Solanum pennellii HOM05D000684 ORTHO05D000688 7.6e-10 67.8 57 59.6
HPP92_010891 Vanilla planifolia HOM05D000684 ORTHO05D000688 7.6e-10 67.8 57 59.6
Cfa014312 Carpinus fangiana HOM05D000684 ORTHO05D000688 9.9e-10 67.4 46 63.0
CiPaw.09G100000 Carya illinoinensis HOM05D000684 ORTHO05D000688 9.9e-10 67.4 58 58.6
Dinv08713 Davidia involucrata HOM05D000684 ORTHO05D000688 9.9e-10 67.4 57 57.9
ECA234G0823 Erigeron canadensis HOM05D000684 ORTHO05D000688 9.9e-10 67.4 57 63.2
HanXRQChr16g0516861 Helianthus annuus HOM05D000684 ORTHO05D000688 9.9e-10 67.4 46 69.6
Lj1A1237T46 Lonicera japonica HOM05D000684 ORTHO05D000688 9.9e-10 67.4 56 60.7
Oeu003164.1 Olea europaea HOM05D000684 ORTHO05D000688 9.9e-10 67.4 46 67.4
Potri.004G002700 Populus trichocarpa HOM05D000684 ORTHO05D000688 9.9e-10 67.4 57 59.6
Rhsim13G0148700 Rhododendron simsii HOM05D000684 ORTHO05D000688 9.9e-10 67.4 57 61.4
SMO115G0171 Selaginella moellendorffii HOM05D000684 ORTHO05D000688 9.9e-10 67.4 51 68.6
unitig_62.g23507 Utricularia gibba HOM05D001218 ORTHO05D003142 9.9e-10 67.4 57 57.9
GSVIVG01007271001 Vitis vinifera HOM05D000684 ORTHO05D000688 9.9e-10 67.4 57 59.6
AagrBONN_evm.TU.Sc2ySwM_369.162 Anthoceros agrestis HOM05D000684 ORTHO05D000688 1.3e-09 67.0 51 66.7
arahy.Tifrunner.gnm1.ann1.V708II Arachis hypogaea HOM05D000684 ORTHO05D000688 1.3e-09 67.0 57 56.1
MSTRG.14131 Avicennia marina HOM05D000684 ORTHO05D000688 1.3e-09 67.0 46 60.9
Cc05_g02820 Coffea canephora HOM05D000684 ORTHO05D000688 1.3e-09 67.0 55 56.4
Dinv13951 Davidia involucrata HOM05D000684 ORTHO05D000688 1.3e-09 67.0 46 67.4
Duzib160G0253 Durio zibethinus HOM05D000684 ORTHO05D000688 1.3e-09 67.0 46 69.6
CSS0049238 Camellia sinensis var. sinensis HOM05D000684 ORTHO05D000688 1.7e-09 66.6 57 57.9
TWI63G1521 Tripterygium wilfordii HOM05D000684 ORTHO05D000688 1.7e-09 66.6 57 57.9
Hma1.2p1_0177F.1_g078120 Hydrangea macrophylla HOM05D000684 ORTHO05D000688 2.2e-09 66.2 57 57.9
Nn1g03366 Nelumbo nucifera HOM05D000684 ORTHO05D000688 2.2e-09 66.2 46 67.4
Nitab4.5_0000622g0200 Nicotiana tabacum HOM05D000684 ORTHO05D000688 2.2e-09 66.2 49 61.2
Rhsim04G0049600 Rhododendron simsii HOM05D000684 ORTHO05D000688 2.2e-09 66.2 57 57.9
SEGI_23822 Sequoiadendron giganteum HOM05D000684 ORTHO05D000688 2.2e-09 66.2 47 66.0
unitig_744.g24516 Utricularia gibba HOM05D000684 ORTHO05D000688 2.2e-09 66.2 59 59.3
Ah.14g083160 Amaranthus hybridus HOM05D000684 ORTHO05D000688 2.9e-09 65.9 47 66.0
CSS0033440 Camellia sinensis var. sinensis HOM05D000684 ORTHO05D000688 2.9e-09 65.9 57 57.9
CANSAT64G1215 Cannabis sativa HOM05D000684 ORTHO05D000688 2.9e-09 65.9 57 57.9
COL.COLO4_31850 Corchorus olitorius HOM05D000684 ORTHO05D000688 2.9e-09 65.9 46 67.4
MD10G1328500 Malus domestica HOM05D000684 ORTHO05D000688 2.9e-09 65.9 57 56.1
MD15G1405100 Malus domestica HOM05D000684 ORTHO05D000688 2.9e-09 65.9 57 56.1
Prupe.5G031300 Prunus persica HOM05D000684 ORTHO05D000688 2.9e-09 65.9 46 63.0
QL03p008156 Quercus lobata HOM05D000684 ORTHO05D000688 2.9e-09 65.9 57 59.6
vmacro09368 Vaccinium macrocarpon HOM05D000684 ORTHO05D000688 2.9e-09 65.9 57 57.9
Lsat_1_v5_gn_4_62980 Lactuca sativa HOM05D000684 ORTHO05D000688 3.8e-09 65.5 57 61.4
Os02g0771100 Oryza sativa ssp. japonica HOM05D000684 ORTHO05D000688 3.8e-09 65.5 57 56.1
Zm00001eb193380 Zea mays HOM05D000684 ORTHO05D000688 3.8e-09 65.5 57 56.1
Zm00001eb256270 Zea mays HOM05D000684 ORTHO05D000688 3.8e-09 65.5 57 56.1
CBR_g23784 Chara braunii HOM05D000684 ORTHO05D000688 4.9e-09 65.1 51 64.7
COL.COLO4_04558 Corchorus olitorius HOM05D000684 ORTHO05D000688 4.9e-09 65.1 57 57.9
DCAR_000480 Daucus carota HOM05D000684 ORTHO05D000688 4.9e-09 65.1 57 59.6
Eucgr.K00737 Eucalyptus grandis HOM05D000684 ORTHO05D000688 4.9e-09 65.1 57 56.1
Pp3c2_24290 Physcomitrium patens HOM05D000684 ORTHO05D000688 4.9e-09 65.1 51 64.7
Sc05g0009500 Simmondsia chinensis HOM05D000684 ORTHO05D000688 4.9e-09 65.1 57 52.6
CDE07G0527 Ceratophyllum demersum HOM05D000684 ORTHO05D000688 6.4e-09 64.7 57 57.9
Ciclev10014775m.g Citrus clementina HOM05D000684 ORTHO05D000688 6.4e-09 64.7 57 57.9
DCAR_004829 Daucus carota HOM05D000684 ORTHO05D000688 6.4e-09 64.7 57 57.9
Duzib138G1612 Durio zibethinus HOM05D000684 ORTHO05D000688 6.4e-09 64.7 57 57.9
Glyma.02G267800 Glycine max HOM05D000684 ORTHO05D000688 6.4e-09 64.7 46 63.0
Nitab4.5_0005875g0050 Nicotiana tabacum HOM05D000684 ORTHO05D000688 6.4e-09 64.7 48 60.4
Oeu007121.1 Olea europaea HOM05D000684 ORTHO05D000688 6.4e-09 64.7 46 60.9
Peaxi162Scf00047g01929 Petunia axillaris HOM05D000684 ORTHO05D000688 6.4e-09 64.7 48 60.4
Phvul.008G214400 Phaseolus vulgaris HOM05D000684 ORTHO05D000688 6.4e-09 64.7 46 63.0
Potri.011G021700 Populus trichocarpa HOM05D000684 ORTHO05D000688 6.4e-09 64.7 57 57.9
Potri.014G159300 Populus trichocarpa HOM05D000684 ORTHO05D000688 6.4e-09 64.7 46 63.0
Thecc.06G230000 Theobroma cacao HOM05D000684 ORTHO05D000688 6.4e-09 64.7 46 65.2
VMungo0647G2441 Vigna mungo HOM05D000684 ORTHO05D000688 6.4e-09 64.7 46 63.0
EL10Ac9g22825 Beta vulgaris HOM05D000684 ORTHO05D000688 8.4e-09 64.3 59 55.9
CSS0023570 Camellia sinensis var. sinensis HOM05D000684 ORTHO05D000688 8.4e-09 64.3 45 64.4
Ciclev10014491m.g Citrus clementina HOM05D000684 ORTHO05D000688 8.4e-09 64.3 46 63.0
Dinv39755 Davidia involucrata HOM05D000684 ORTHO05D000688 8.4e-09 64.3 57 54.4
Migut.H01246 Erythranthe guttata HOM05D000684 ORTHO05D000688 8.4e-09 64.3 57 54.4
Gohir.A11G152500 Gossypium hirsutum HOM05D000684 ORTHO05D000688 8.4e-09 64.3 57 57.9
Gorai.007G170000 Gossypium raimondii HOM05D000684 ORTHO05D000688 8.4e-09 64.3 57 57.9
Pp3c11_15840 Physcomitrium patens HOM05D000684 ORTHO05D000688 8.4e-09 64.3 51 64.7
TWI36G1526 Tripterygium wilfordii HOM05D000684 ORTHO05D000688 8.4e-09 64.3 57 57.9
AUR62017583 Chenopodium quinoa HOM05D000684 ORTHO05D000688 1.1e-08 63.9 59 54.2
Gohir.A10G010500 Gossypium hirsutum HOM05D000684 ORTHO05D000688 1.1e-08 63.9 46 63.0
Gohir.D10G010200 Gossypium hirsutum HOM05D000684 ORTHO05D000688 1.1e-08 63.9 46 63.0
Gorai.011G011200 Gossypium raimondii HOM05D000684 ORTHO05D000688 1.1e-08 63.9 46 63.0
MD06G1037700 Malus domestica HOM05D000684 ORTHO05D000688 1.1e-08 63.9 57 56.1
AUR62015122 Chenopodium quinoa HOM05D000684 ORTHO05D000688 1.4e-08 63.5 60 53.3
Ca_06056_v3 Cicer arietinum L. HOM05D000684 ORTHO05D000688 1.4e-08 63.5 46 60.9
FvH4_3g01260 Fragaria vesca HOM05D000684 ORTHO05D000688 1.4e-08 63.5 46 60.9
MD16G1272200 Malus domestica HOM05D000684 ORTHO05D000688 1.4e-08 63.5 57 56.1
Medtr5g085250 Medicago truncatula HOM05D000684 ORTHO05D000688 1.4e-08 63.5 46 60.9
Psat2g025120 Pisum sativum HOM05D000684 ORTHO05D000688 1.4e-08 63.5 46 60.9
PGR142G3017 Punica granatum HOM05D000684 ORTHO05D000688 1.4e-08 63.5 57 56.1
QL05p070127 Quercus lobata HOM05D000684 ORTHO05D000688 1.4e-08 63.5 57 57.9
Sed0004316 Sechium edule HOM05D000684 ORTHO05D000688 1.4e-08 63.5 57 54.4
TPR.G25638 Trifolium pratense HOM05D000684 ORTHO05D000688 1.4e-08 63.5 46 60.9
Pp3c7_14320 Physcomitrium patens HOM05D000684 ORTHO05D000688 1.9e-08 63.2 51 62.7
Atru.chr6.3264 Acer truncatum HOM05D000684 ORTHO05D000688 2.4e-08 62.8 57 54.4
ECA234G3468 Erigeron canadensis HOM05D000684 ORTHO05D000688 2.4e-08 62.8 57 54.4
Sc21g0001130 Simmondsia chinensis HOM05D000684 ORTHO05D000688 2.4e-08 62.8 59 54.2
Sabra14G0121000 Salix brachista HOM05D000684 ORTHO05D000688 3.2e-08 62.4 57 57.9
Haze_06889 Corylus avellana HOM05D000684 ORTHO05D000688 4.2e-08 62.0 46 60.9
RcHm_v2.0_Chr5g0001791 Rosa chinensis HOM05D000684 ORTHO05D000688 4.2e-08 62.0 46 58.7
Thecc.01G183000 Theobroma cacao HOM05D000684 ORTHO05D000688 4.2e-08 62.0 46 63.0
Glyma.14G049700 Glycine max HOM05D000684 ORTHO05D000688 5.4e-08 61.6 46 60.9
Lsat_1_v5_gn_5_123420 Lactuca sativa HOM05D000684 ORTHO05D000688 5.4e-08 61.6 46 58.7
Lj1C783G4 Lonicera japonica HOM05D000684 ORTHO05D000688 5.4e-08 61.6 46 60.9
FvH4_5g22570 Fragaria vesca HOM05D000684 ORTHO05D000688 7.1e-08 61.2 57 52.6
FAN04G2151 Fragaria x ananassa HOM05D000684 ORTHO05D000688 7.1e-08 61.2 57 52.6
FAN13G2641 Fragaria x ananassa HOM05D000684 ORTHO05D000688 7.1e-08 61.2 57 52.6
FAN18G4381 Fragaria x ananassa HOM05D000684 ORTHO05D000688 7.1e-08 61.2 57 52.6
Lsat_1_v5_gn_7_14480 Lactuca sativa HOM05D000684 ORTHO05D000688 7.1e-08 61.2 57 56.1
RcHm_v2.0_Chr7g0210341 Rosa chinensis HOM05D000684 ORTHO05D000688 7.1e-08 61.2 57 52.6
Atru.chr10.2312 Acer truncatum HOM05D000684 ORTHO05D000688 9.3e-08 60.8 48 58.3
Mapoly0143s0030 Marchantia polymorpha HOM05D000684 ORTHO05D000688 9.3e-08 60.8 51 60.8
AUR62012768 Chenopodium quinoa HOM05D000684 ORTHO05D000688 1.2e-07 60.5 79 45.6
Gohir.D11G159400 Gossypium hirsutum HOM05D000684 ORTHO05D000688 1.2e-07 60.5 57 56.1
Peaxi162Scf00442g00622 Petunia axillaris HOM05D000684 ORTHO05D000688 1.2e-07 60.5 57 54.4
BcaB06g28643 Brassica carinata HOM05D000684 ORTHO05D000688 1.6e-07 60.1 47 66.0
Pp3c1_13190 Physcomitrium patens HOM05D000684 ORTHO05D000688 1.6e-07 60.1 51 62.7
Gohir.A03G050950 Gossypium hirsutum HOM05D000684 ORTHO05D000688 2.1e-07 59.7 49 57.1
CANSAT56G2927 Cannabis sativa HOM05D000684 ORTHO05D000688 3.5e-07 58.9 56 51.8
AUR62021890 Chenopodium quinoa HOM05D000684 ORTHO05D000688 3.5e-07 58.9 79 44.3
Cc02_g39010 Coffea canephora HOM05D000684 ORTHO05D000688 4.6e-07 58.5 61 50.8
HanXRQChr10g0306131 Helianthus annuus HOM05D000684 ORTHO05D000688 4.6e-07 58.5 46 56.5
Pp3c6_5030 Physcomitrium patens HOM05D000684 ORTHO05D000688 4.6e-07 58.5 51 56.9
Pp3c3_16700 Physcomitrium patens HOM05D000684 ORTHO05D000688 6.0e-07 58.2 51 56.9
Haze_12761 Corylus avellana HOM05D000684 ORTHO05D000688 7.9e-07 57.8 60 48.3
GSVIVG01030511001 Vitis vinifera HOM05D000684 ORTHO05D000688 7.9e-07 57.8 57 52.6
Pp3c16_19410 Physcomitrium patens HOM05D000684 ORTHO05D000688 1.0e-06 57.4 51 54.9
Pp3c5_26150 Physcomitrium patens HOM05D000684 ORTHO05D000688 1.0e-06 57.4 51 54.9
Hund23416 Selenicereus undatus HOM05D000684 ORTHO05D000688 1.0e-06 57.4 51 51.0
Ah.14g087820 Amaranthus hybridus HOM05D000684 ORTHO05D000688 1.7e-06 56.6 57 47.4
Cpa.g.sc152.61 Carica papaya HOM05D000684 ORTHO05D000688 1.7e-06 56.6 46 56.5
arahy.Tifrunner.gnm1.ann1.NA6SJF Arachis hypogaea HOM05D000684 ORTHO05D000688 3.0e-06 55.8 75 42.7
EL10Ac8g20146 Beta vulgaris HOM05D000684 ORTHO05D000688 3.0e-06 55.8 57 49.1
Hma1.2p1_0298F.1_g117360 Hydrangea macrophylla HOM05D000684 ORTHO05D000688 3.0e-06 55.8 46 54.3
Pp3c13_21340 Physcomitrium patens HOM05D000684 ORTHO05D000688 3.0e-06 55.8 51 52.9
SMO358G0162 Selaginella moellendorffii HOM05D000684 ORTHO05D000688 3.0e-06 55.8 51 51.0
DCAR_013108 Daucus carota HOM05D000684 ORTHO05D000688 5.1e-06 55.1 46 50.0
Rhsim06G0199300 Rhododendron simsii HOM05D000684 ORTHO05D000688 6.6e-06 54.7 46 50.0
DCAR_020989 Daucus carota HOM05D000684 ORTHO05D000688 8.7e-06 54.3 46 47.8
vmacro11867 Vaccinium macrocarpon HOM05D000684 ORTHO05D000688 8.7e-06 54.3 46 50.0


User provided reference genes

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