Gene: Sopen11g006790

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen11g006790
  • Transcript Identifier Sopen11g006790.1
  • Gene Type Coding gene
  • Location Spenn-ch11 : 4970797-4975807 : negative

Gene Family Information

  • ID HOM05D000684
  • #Genes/#Species 835/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen11g006790.1

Descriptions

  • Description Represses photomorphogenesis and induces skotomorphogenesis in the dark. Contains a ring finger zinc-binding motif, a coiled-coil domain, and several WD-40 repeats, similar to G-beta proteins. The C-terminus has homology to TAFII80, a subunit of the TFIID component of the RNA polymerase II of Drosophila. Nuclear localization in the dark and cytoplasmic in the light. | CONSTITUTIVE PHOTOMORPHOGENIC 1 (COP1) | CONTAINS InterPro DOMAIN/s: WD40 repeat 2 , Zinc finger, RING-type, conserved site , Zinc finger, RING-type , WD40 repeat, conserved site , WD40 repeat , WD40 repeat-like-containing domain , WD40-repeat-containing domain , Zinc finger, C3HC4 RING-type , WD40/YVTN repeat-like-containing domain , WD40 repeat, subgroup | BEST Arabidopsis thaliana protein match is: SPA1-related 2
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009640
ISO
PLAZA Homology (enrichment)photomorphogenesis HOM05D000684

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding
GO:0061630
IEA
InterProubiquitin protein ligase activity

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001680 WD40 repeat
IPR015943 WD40/YVTN repeat-like-containing domain superfamily
IPR042755 E3 ubiquitin-protein ligase COP1
IPR036322 WD40-repeat-containing domain superfamily
IPR001841 Zinc finger, RING-type
IPR013083 Zinc finger, RING/FYVE/PHD-type
Mapman id Description
19.2.2.8.3.4.4.1 Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.Cullin-based ubiquitylation complexes.CUL4-DDB1 E3 ubiquitin ligase complexes.substrate adaptor activities.COP1-SPA substrate adaptor subcomplex.component COP1
26.1.1.3.1 External stimuli response.light.red/far red light.substrate adaptor module of CUL4-DDB1 ubiquitin ligase complex.component COP1