Gene: Pp3c11_15840
General Information
Structural Information
- Species Physcomitrium patens
- Gene Identifier Pp3c11_15840
- Transcript Identifier Pp3c11_15840V3.7
- Gene Type Coding gene
- Location Chr11 : 10527708-10533376 : positive
Gene Family Information
- ID HOM05D000684
- #Genes/#Species 835/100
- Phylogenetic origin
- ID ORTHO05D000688
- #Genes/#Species 673/100
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- name Pp3c11_15840V3.7
- pacid 32959366
- alias Phypa_114861
- alias Pp1s11_401V6
- alias Phpat.011G058000
- uniprot A0A2K1JUW5
Descriptions
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009647 | ISO | PLAZA Integrative Orthology | skotomorphogenesis | AT2G32950 |
| GO:0009641 | ISO | PLAZA Integrative Orthology | shade avoidance | AT2G32950 |
| GO:0010119 | ISO | PLAZA Integrative Orthology | regulation of stomatal movement | AT2G32950 |
| GO:0009640 | ISO | PLAZA Integrative Orthology | photomorphogenesis | AT2G32950 |
| GO:0009649 | ISO | PLAZA Integrative Orthology | entrainment of circadian clock | AT2G32950 |
| GO:0046283 | ISO | PLAZA Integrative Orthology | anthocyanin-containing compound metabolic process | AT2G32950 |
| GO:0006281 | ISO | PLAZA Integrative Orthology | DNA repair | AT2G32950 |
| GO:0048573 | ISO | PLAZA Integrative Orthology | photoperiodism, flowering | AT2G32950 |
| GO:0016567 | IEA | GOA Database | protein ubiquitination | |
| GO:0016567 | IEA | InterPro | protein ubiquitination |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0042802 | ISO | PLAZA Integrative Orthology | identical protein binding | AT2G32950 |
| GO:0005515 | IEA | InterPro | protein binding | |
| GO:0004842 | IEA | GOA Database | ubiquitin-protein transferase activity | |
| GO:0004842 | IEA | InterPro | ubiquitin-protein transferase activity | |
| GO:0061630 | IEA | GOA Database | ubiquitin protein ligase activity | |
| GO:0061630 | IEA | InterPro | ubiquitin protein ligase activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT2G32950 |
| GO:0000152 | ISO | PLAZA Integrative Orthology | nuclear ubiquitin ligase complex | AT2G32950 |
| GO:0016604 | ISO | PLAZA Integrative Orthology | nuclear body | AT2G32950 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR001841 | Zinc finger, RING-type |
| IPR013083 | Zinc finger, RING/FYVE/PHD-type |
| IPR001680 | WD40 repeat |
| IPR036322 | WD40-repeat-containing domain superfamily |
| IPR015943 | WD40/YVTN repeat-like-containing domain superfamily |
| IPR003613 | U box domain |
| IPR020472 | G-protein beta WD-40 repeat |
| IPR042755 | E3 ubiquitin-protein ligase COP1 |
| Mapman id | Description |
|---|---|
| 19.2.2.8.3.4.4.1 | Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.Cullin-based ubiquitylation complexes.CUL4-DDB1 E3 ubiquitin ligase complexes.substrate adaptor activities.COP1-SPA substrate adaptor subcomplex.component COP1 |
| 26.1.1.3.1 | External stimuli response.light.red/far red light.substrate adaptor module of CUL4-DDB1 ubiquitin ligase complex.component COP1 |