Gene: AL4G28470

General Information

Structural Information

  • Species Arabidopsis lyrata
  • Gene Identifier AL4G28470
  • Transcript Identifier AL4G28470.t1
  • Gene Type Coding gene
  • Location scaffold_4 : 15601738-15607090 : positive

Gene Family Information

  • ID HOM05D000684
  • #Genes/#Species 835/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id AL4G28470.v2.1
  • synonym 933875
  • synonym scaffold_401863.1
  • pacid 35923725

Descriptions

  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006281
ISO
PLAZA Integrative OrthologyDNA repair AT2G32950
GO:0009640
ISO
PLAZA Integrative Orthologyphotomorphogenesis AT2G32950
GO:0009641
ISO
PLAZA Integrative Orthologyshade avoidance AT2G32950
GO:0009647
ISO
PLAZA Integrative Orthologyskotomorphogenesis AT2G32950
GO:0048573
ISO
PLAZA Integrative Orthologyphotoperiodism, flowering AT2G32950
GO:0046283
ISO
PLAZA Integrative Orthologyanthocyanin-containing compound metabolic process AT2G32950
GO:0009649
ISO
PLAZA Integrative Orthologyentrainment of circadian clock AT2G32950
GO:0010119
ISO
PLAZA Integrative Orthologyregulation of stomatal movement AT2G32950

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding
GO:0061630
IEA
InterProubiquitin protein ligase activity
GO:0042802
ISO
PLAZA Integrative Orthologyidentical protein binding AT2G32950
GO:0004842
ISO
PLAZA Integrative Orthologyubiquitin-protein transferase activity AT2G32950

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016604
ISO
PLAZA Integrative Orthologynuclear body AT2G32950
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT2G32950
GO:0000152
ISO
PLAZA Integrative Orthologynuclear ubiquitin ligase complex AT2G32950

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001841 Zinc finger, RING-type
IPR015943 WD40/YVTN repeat-like-containing domain superfamily
IPR042755 E3 ubiquitin-protein ligase COP1
IPR036322 WD40-repeat-containing domain superfamily
IPR013083 Zinc finger, RING/FYVE/PHD-type
IPR001680 WD40 repeat
Mapman id Description
19.2.2.8.3.4.4.1 Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.Cullin-based ubiquitylation complexes.CUL4-DDB1 E3 ubiquitin ligase complexes.substrate adaptor activities.COP1-SPA substrate adaptor subcomplex.component COP1
26.1.1.3.1 External stimuli response.light.red/far red light.substrate adaptor module of CUL4-DDB1 ubiquitin ligase complex.component COP1