Gene: AT2G32950

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT2G32950
  • Transcript Identifier AT2G32950.1
  • Gene Type Coding gene
  • Location Chr2 : 13978000-13983282 : positive

Gene Family Information

  • ID HOM05D000684
  • #Genes/#Species 835/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT2G32950.1
  • symbol COP1
  • Alias ATCOP1,ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1,DET340,DEETIOLATED MUTANT 340,EMB168,EMBRYO DEFECTIVE 168,FUS1,FUSCA 1
  • full_name CONSTITUTIVE PHOTOMORPHOGENIC 1
  • uniprot P43254

Descriptions

  • Description Transducin/WD40 repeat-like superfamily protein
  • Computational description CONSTITUTIVE PHOTOMORPHOGENIC 1 (COP1); CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: SPA1-related 2 (TAIR:AT4G11110.1); Has 42218 Blast hits to 27649 proteins in 756 species: Archae - 30; Bacteria - 4454; Metazoa - 17716; Fungi - 8958; Plants - 5306; Viruses - 46; Other Eukaryotes - 5708 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009640
IGI
TAS
Gene Ontologyphotomorphogenesis1 2
GO:0009649
IMP
Gene Ontologyentrainment of circadian clock3
GO:0009641
IMP
Gene Ontologyshade avoidance4
GO:0043161
IBA
Gene Ontologyproteasome-mediated ubiquitin-dependent protein catabolic process5
GO:0006281
IMP
Gene OntologyDNA repair6
GO:0009585
IEA
GOA Databasered, far-red light phototransduction
GO:0010017
IEA
GOA Databasered or far-red light signaling pathway
GO:0048573
IMP
Gene Ontologyphotoperiodism, flowering7
GO:0046283
IMP
Gene Ontologyanthocyanin-containing compound metabolic process8
GO:0010119
IMP, IGI
Gene Ontologyregulation of stomatal movement9
GO:0009647
TAS
Gene Ontologyskotomorphogenesis10
GO:0016567
IEA
Gene Ontologyprotein ubiquitination

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004842
IDA, IMP
Gene Ontologyubiquitin-protein transferase activity11 12
GO:0061630
IDA
IBA
IEA
Gene Ontologyubiquitin protein ligase activity5 13
GO:0061630
IEA
InterProubiquitin protein ligase activity
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0016740
IEA
GOA Databasetransferase activity
GO:0005515
IPI
Gene Ontologyprotein binding14
GO:0005515
IEA
InterProprotein binding
GO:0042802
IPI
Gene Ontologyidentical protein binding15

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
IEA
GOA Databasecytoplasm
GO:0016604
IDA
Gene Ontologynuclear body16
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IDA, IMP
ISM
Gene Ontologynucleus10 17
GO:0080008
ISS
Gene OntologyCul4-RING E3 ubiquitin ligase complex18
GO:0000152
TAS
Gene Ontologynuclear ubiquitin ligase complex19

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR015943 WD40/YVTN repeat-like-containing domain superfamily
IPR001841 Zinc finger, RING-type
IPR001680 WD40 repeat
IPR013083 Zinc finger, RING/FYVE/PHD-type
IPR036322 WD40-repeat-containing domain superfamily
IPR042755 E3 ubiquitin-protein ligase COP1
Mapman id Description
19.2.2.8.3.4.4.1 Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.Cullin-based ubiquitylation complexes.CUL4-DDB1 E3 ubiquitin ligase complexes.substrate adaptor activities.COP1-SPA substrate adaptor subcomplex.component COP1
26.1.1.3.1 External stimuli response.light.red/far red light.substrate adaptor module of CUL4-DDB1 ubiquitin ligase complex.component COP1