Gene: Solyc11g011980.3

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc11g011980.3
  • Transcript Identifier Solyc11g011980.3.1
  • Gene Type Coding gene
  • Location SL4.0ch11 : 4983778-4988489 : negative

Gene Family Information

  • ID HOM05D000684
  • #Genes/#Species 835/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc11g011980.3.1
  • uniprot A0A3Q7IS12
  • gene_id Solyc11g011980

Descriptions

  • Description WD40 repeat (AHRD V3.3 *** A0A200RBE1_9MAGN)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016567
IEA
GOA Databaseprotein ubiquitination
GO:0009640
ISO
PLAZA Homology (enrichment)photomorphogenesis HOM05D000684

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding
GO:0061630
IEA
GOA Databaseubiquitin protein ligase activity
GO:0061630
IEA
InterProubiquitin protein ligase activity
GO:0009916
IEA
GOA Databasealternative oxidase activity
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0102721
IEA
GOA Databaseubiquinol:oxygen oxidoreductase activity
GO:0016491
IEA
GOA Databaseoxidoreductase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0070469
IEA
GOA Databaserespirasome
GO:0016021
IEA
GOA Databaseintegral component of membrane
GO:0016020
IEA
GOA Databasemembrane

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001680 WD40 repeat
IPR001841 Zinc finger, RING-type
IPR013083 Zinc finger, RING/FYVE/PHD-type
IPR015943 WD40/YVTN repeat-like-containing domain superfamily
IPR042755 E3 ubiquitin-protein ligase COP1
IPR036322 WD40-repeat-containing domain superfamily
Mapman id Description
19.2.2.8.3.4.4.1 Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.Cullin-based ubiquitylation complexes.CUL4-DDB1 E3 ubiquitin ligase complexes.substrate adaptor activities.COP1-SPA substrate adaptor subcomplex.component COP1
26.1.1.3.1 External stimuli response.light.red/far red light.substrate adaptor module of CUL4-DDB1 ubiquitin ligase complex.component COP1