Gene: Nitab4.5_0005875g0050
General Information
Structural Information
- Species Nicotiana tabacum
- Gene Identifier Nitab4.5_0005875g0050
- Transcript Identifier Nitab4.5_0005875g0050.1
- Gene Type Coding gene
- Location Nitab4.5_0005875 : 16091-30790 : negative
Gene Family Information
- ID HOM05D000684
- #Genes/#Species 835/100
- Phylogenetic origin
- ID ORTHO05D000688
- #Genes/#Species 673/100
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Nitab4.5_0005875g0050.1
- SR1-identifier Nta11g27330.4
Descriptions
- Description WD40 repeat, Zinc finger, RING/FYVE/PHD-type, Zinc finger, RING-type, WD40-repeat-containing domain, WD40 repeat, conserved site, Zinc finger, RING-type, conserved site, WD40/YVTN repeat-like-containing domain, G-protein beta WD-40 repeat
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006281 | ISO | PLAZA Integrative Orthology | DNA repair | AT2G32950 |
| GO:0009640 | ISO | PLAZA Integrative Orthology | photomorphogenesis | AT2G32950 |
| GO:0009641 | ISO | PLAZA Integrative Orthology | shade avoidance | AT2G32950 |
| GO:0009647 | ISO | PLAZA Integrative Orthology | skotomorphogenesis | AT2G32950 |
| GO:0048573 | ISO | PLAZA Integrative Orthology | photoperiodism, flowering | AT2G32950 |
| GO:0046283 | ISO | PLAZA Integrative Orthology | anthocyanin-containing compound metabolic process | AT2G32950 |
| GO:0009649 | ISO | PLAZA Integrative Orthology | entrainment of circadian clock | AT2G32950 |
| GO:0010119 | ISO | PLAZA Integrative Orthology | regulation of stomatal movement | AT2G32950 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005515 | IEA | InterPro | protein binding | |
| GO:0061630 | IEA | InterPro | ubiquitin protein ligase activity | |
| GO:0042802 | ISO | PLAZA Integrative Orthology | identical protein binding | AT2G32950 |
| GO:0004842 | ISO | PLAZA Integrative Orthology | ubiquitin-protein transferase activity | AT2G32950 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0016604 | ISO | PLAZA Integrative Orthology | nuclear body | AT2G32950 |
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT2G32950 |
| GO:0000152 | ISO | PLAZA Integrative Orthology | nuclear ubiquitin ligase complex | AT2G32950 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR015943 | WD40/YVTN repeat-like-containing domain superfamily |
| IPR001680 | WD40 repeat |
| IPR013083 | Zinc finger, RING/FYVE/PHD-type |
| IPR020472 | G-protein beta WD-40 repeat |
| IPR042755 | E3 ubiquitin-protein ligase COP1 |
| IPR001841 | Zinc finger, RING-type |
| IPR036322 | WD40-repeat-containing domain superfamily |
| Mapman id | Description |
|---|---|
| 19.2.2.8.3.4.4.1 | Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.Cullin-based ubiquitylation complexes.CUL4-DDB1 E3 ubiquitin ligase complexes.substrate adaptor activities.COP1-SPA substrate adaptor subcomplex.component COP1 |
| 26.1.1.3.1 | External stimuli response.light.red/far red light.substrate adaptor module of CUL4-DDB1 ubiquitin ligase complex.component COP1 |