Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RhsimUnG0109100 Rhododendron simsii HOM05D003850 ORTHO05D004515 2.3e-288 995.0 529 100.0
Rhsim13G0146600 Rhododendron simsii HOM05D003850 ORTHO05D004515 7.8e-281 969.9 583 90.7
vmacro03646 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 1.3e-174 617.1 546 65.2
CSS0032808 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 1.1e-144 517.7 530 60.6
QL05p069776 Quercus lobata HOM05D003850 ORTHO05D004515 4.0e-144 515.8 544 60.3
CSS0007684 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 9.9e-143 511.1 549 59.0
CANSAT56G0590 Cannabis sativa HOM05D003850 ORTHO05D004515 2.2e-142 510.0 526 59.7
Aqoxy1G04110 Aquilegia oxysepala HOM05D003850 ORTHO05D004515 7.1e-141 505.0 528 57.8
Duzib160G0220 Durio zibethinus HOM05D003850 ORTHO05D004515 9.2e-141 504.6 545 61.5
Nn1g03331 Nelumbo nucifera HOM05D003850 ORTHO05D004515 1.6e-140 503.8 526 59.5
TAR624G0821 Trochodendron aralioides HOM05D003850 ORTHO05D004515 1.5e-135 487.3 534 58.8
Thecc.06G232700 Theobroma cacao HOM05D003850 ORTHO05D004515 4.4e-135 485.7 549 57.6
Sed0003006 Sechium edule HOM05D003850 ORTHO05D004515 1.7e-134 483.8 517 59.4
Sopen11g006940 Solanum pennellii HOM05D003850 ORTHO05D004515 1.4e-133 480.7 520 57.3
Actinidia39269 Actinidia chinensis HOM05D003850 ORTHO05D004515 4.2e-133 479.2 363 72.7
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 5.4e-133 478.8 537 59.8
PSO210G4264 Papaver somniferum HOM05D003850 ORTHO05D004515 5.4e-133 478.8 548 56.6
Phvul.006G143600 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 2.3e-131 473.4 524 55.5
arahy.Tifrunner.gnm1.ann1.C17RPB Arachis hypogaea HOM05D003850 ORTHO05D004515 3.0e-131 473.0 532 54.7
Potri.006G009100 Populus trichocarpa HOM05D003850 ORTHO05D004515 3.0e-131 473.0 532 58.1
Manes.07G088900 Manihot esculenta HOM05D003850 ORTHO05D004515 6.6e-131 471.9 522 60.9
Potri.016G015100 Populus trichocarpa HOM05D003850 ORTHO05D004515 1.1e-130 471.1 530 56.0
RhsimUnG0025700 Rhododendron simsii HOM05D003850 ORTHO05D004515 4.3e-130 469.2 573 54.6
RhsimUnG0028500 Rhododendron simsii HOM05D003850 ORTHO05D004515 4.3e-130 469.2 573 54.6
arahy.Tifrunner.gnm1.ann1.IIR6TV Arachis hypogaea HOM05D003850 ORTHO05D004515 1.3e-129 467.6 532 54.5
TAR629G2665 Trochodendron aralioides HOM05D003850 ORTHO05D004515 2.1e-129 466.8 555 52.1
Migut.M01390 Erythranthe guttata HOM05D003850 ORTHO05D004515 3.6e-129 466.1 534 55.4
CiPaw.09G102000 Carya illinoinensis HOM05D003850 ORTHO05D004515 4.8e-129 465.7 536 55.2
Nitab4.5_0001198g0010 Nicotiana tabacum HOM05D003850 ORTHO05D004515 1.4e-128 464.2 533 54.8
Prupe.4G011300 Prunus persica HOM05D003850 ORTHO05D004515 1.4e-128 464.2 534 58.2
MSTRG.7170 Avicennia marina HOM05D003850 ORTHO05D004515 1.8e-128 463.8 533 55.9
Ciclev10014841m.g Citrus clementina HOM05D003850 ORTHO05D004515 2.4e-128 463.4 528 56.8
Ca_00718_v3 Cicer arietinum L. HOM05D003850 ORTHO05D004515 3.1e-128 463.0 529 53.1
SGA_v2.0_scaffold4G01878 Striga asiatica HOM05D003850 ORTHO05D004515 3.1e-128 463.0 532 59.2
Glyma.09G009900 Glycine max HOM05D003850 ORTHO05D004515 4.0e-128 462.6 523 55.1
Lalb_Chr20g0119201 Lupinus albus HOM05D003850 ORTHO05D004515 1.5e-127 460.7 526 52.9
PSO302G0165 Papaver somniferum HOM05D003850 ORTHO05D004515 7.6e-127 458.4 546 54.6
Atru.chr1.2461 Acer truncatum HOM05D003850 ORTHO05D004515 1.1e-125 454.5 533 54.8
unitig_748.g7103 Utricularia gibba HOM05D003850 ORTHO05D004515 3.2e-125 453.0 548 57.3
arahy.Tifrunner.gnm1.ann1.97WSNQ Arachis hypogaea HOM05D003850 ORTHO05D004515 1.2e-124 451.1 538 56.9
CsaV3_3G028740 Cucumis sativus L. HOM05D003850 ORTHO05D004515 1.2e-124 451.1 519 57.8
GSVIVG01003352001 Vitis vinifera HOM05D003850 ORTHO05D004515 1.6e-124 450.7 532 57.9
VMungo1215G3075 Vigna mungo HOM05D003850 ORTHO05D004515 2.1e-124 450.3 532 56.2
Nitab4.5_0000143g0310 Nicotiana tabacum HOM05D003850 ORTHO05D004515 7.9e-124 448.4 530 53.4
Gorai.010G186300 Gossypium raimondii HOM05D003850 ORTHO05D004515 3.0e-123 446.4 540 55.9
Gohir.A06G153120 Gossypium hirsutum HOM05D003850 ORTHO05D004515 5.1e-123 445.7 539 55.3
Oeu002760.2 Olea europaea HOM05D003850 ORTHO05D004515 5.1e-123 445.7 568 56.0
Glyma.15G114200 Glycine max HOM05D003850 ORTHO05D004515 6.7e-123 445.3 528 52.3
Cc09_g00920 Coffea canephora HOM05D003850 ORTHO05D004515 1.1e-122 444.5 544 56.6
TWI63G0294 Tripterygium wilfordii HOM05D003850 ORTHO05D004515 1.6e-121 440.7 534 58.1
SalBow8G5272 Salvia bowleyana HOM05D003850 ORTHO05D004515 1.4e-120 437.6 544 53.5
THA.LOC104812992 Tarenaya hassleriana HOM05D003850 ORTHO05D004515 1.8e-120 437.2 538 50.6
Gohir.D06G159600 Gossypium hirsutum HOM05D003850 ORTHO05D004515 2.4e-120 436.8 540 55.4
ClCG07G001740 Citrullus lanatus HOM05D003850 ORTHO05D004515 5.3e-120 435.6 515 56.3
Eucgr.E03951 Eucalyptus grandis HOM05D003850 ORTHO05D004515 9.0e-120 434.9 534 53.4
Lj2A262G45 Lonicera japonica HOM05D003850 ORTHO05D004515 5.8e-119 432.2 527 54.3
MBI16_g42266_MAGBIO Magnolia biondii HOM05D003850 ORTHO05D004515 1.3e-118 431.0 535 52.3
HPP92_001629 Vanilla planifolia HOM05D003850 ORTHO05D004515 4.9e-118 429.1 533 51.0
Phvul.003G083500 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 6.4e-118 428.7 533 53.7
vmacro15772 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 6.4e-118 428.7 558 54.1
Solyc11g012150.3 Solanum lycopersicum HOM05D003850 ORTHO05D004515 8.4e-118 428.3 484 56.6
VMungo0540G1287 Vigna mungo HOM05D003850 ORTHO05D004515 8.4e-118 428.3 525 52.8
Oeu044421.3 Olea europaea HOM05D003850 ORTHO05D004515 1.1e-117 427.9 330 74.2
PGSC0003DMG400013344 Solanum tuberosum HOM05D003850 ORTHO05D004515 1.4e-117 427.6 483 56.1
arahy.Tifrunner.gnm1.ann1.0C9QHL Arachis hypogaea HOM05D003850 ORTHO05D004515 3.5e-116 422.9 536 53.5
Sabra06G0006900 Salix brachista HOM05D003850 ORTHO05D004515 2.3e-115 420.2 527 53.7
Sabra16G0017100 Salix brachista HOM05D003850 ORTHO05D004515 2.5e-114 416.8 543 52.7
PGR102G0753 Punica granatum HOM05D003850 ORTHO05D004515 9.6e-114 414.8 522 53.1
Cpa.g.sc75.120 Carica papaya HOM05D003850 ORTHO05D004515 1.3e-113 414.5 512 56.4
Medtr2g025590 Medicago truncatula HOM05D003850 ORTHO05D004515 6.2e-113 412.1 532 52.1
TPR.G3343 Trifolium pratense HOM05D003850 ORTHO05D004515 6.2e-113 412.1 554 49.3
MD05G1357300 Malus domestica HOM05D003850 ORTHO05D004515 2.4e-112 410.2 539 52.7
COL.COLO4_31876 Corchorus olitorius HOM05D003850 ORTHO05D004515 4.0e-112 409.5 550 51.1
AL6G47570 Arabidopsis lyrata HOM05D003850 ORTHO05D004515 1.5e-111 407.5 527 54.3
ECA233G3046 Erigeron canadensis HOM05D003850 ORTHO05D004515 1.5e-111 407.5 516 52.7
Haze_08659 Corylus avellana HOM05D003850 ORTHO05D004515 4.5e-111 406.0 547 51.7
Sabra16G0000900 Salix brachista HOM05D003850 ORTHO05D004515 4.5e-111 406.0 539 47.5
CiPaw.10G077600 Carya illinoinensis HOM05D003850 ORTHO05D004515 5.8e-111 405.6 496 54.4
PSO339G3925 Papaver somniferum HOM05D003850 ORTHO05D004515 7.6e-111 405.2 514 53.7
Aa31LG9G10040 Aethionema arabicum HOM05D003850 ORTHO05D004515 2.5e-109 400.2 558 50.9
Lj6g0013016 Lotus japonicus HOM05D003850 ORTHO05D004515 2.5e-109 400.2 533 52.2
SEGI_18521 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 3.5e-108 396.4 541 48.8
CAN.G1186.28 Capsicum annuum HOM05D003850 ORTHO05D004515 1.0e-107 394.8 549 47.9
AT4G12610 Arabidopsis thaliana HOM05D003850 ORTHO05D004515 1.9e-106 390.6 519 52.4
Cfa000110 Carpinus fangiana HOM05D003850 ORTHO05D004515 7.4e-106 388.7 533 52.7
AUR62021872 Chenopodium quinoa HOM05D003850 ORTHO05D004515 9.7e-106 388.3 545 47.7
FAN25G3770 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.3e-105 387.9 566 45.8
FvH4_3g01042 Fragaria vesca HOM05D003850 ORTHO05D004515 1.6e-105 387.5 532 47.9
Peaxi162Scf00558g00516 Petunia axillaris HOM05D003850 ORTHO05D004515 1.8e-104 384.0 475 53.9
ATR0751G086 Amborella trichopoda HOM05D003850 ORTHO05D004515 2.4e-104 383.6 529 49.5
Carub.0006s3188 Capsella rubella HOM05D003850 ORTHO05D004515 3.4e-103 379.8 526 51.7
HanXRQChr15g0470091 Helianthus annuus HOM05D003850 ORTHO05D004515 2.9e-102 376.7 499 53.1
BraA09t38246Z Brassica rapa HOM05D003850 ORTHO05D004515 8.5e-102 375.2 520 47.3
SHI24464 Sapria himalayana HOM05D003850 ORTHO05D004515 9.4e-101 371.7 518 47.5
BolC9t56221H Brassica oleracea HOM05D003850 ORTHO05D004515 2.1e-100 370.5 510 51.6
Lj4g0025543 Lotus japonicus HOM05D003850 ORTHO05D004515 1.1e-98 364.8 527 47.6
FAN21G1422 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.5e-98 364.4 552 45.5
MD10G1331000 Malus domestica HOM05D003850 ORTHO05D004515 7.4e-98 362.1 495 51.7
RcHm_v2.0_Chr5g0001581 Rosa chinensis HOM05D003850 ORTHO05D004515 1.3e-97 361.3 541 49.0
A09p26740 Brassica napus HOM05D003850 ORTHO05D004515 1.1e-96 358.2 509 46.4
A03p29830 Brassica napus HOM05D003850 ORTHO05D004515 1.8e-96 357.5 531 50.1
C03p36090 Brassica napus HOM05D003850 ORTHO05D004515 1.8e-96 357.5 531 49.9
CDE06G1774 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 1.8e-96 357.5 334 61.7
BcaC01g04577 Brassica carinata HOM05D003850 ORTHO05D004515 2.4e-96 357.1 533 49.7
BolC3t15918H Brassica oleracea HOM05D003850 ORTHO05D004515 2.4e-96 357.1 533 49.7
BraA03t12173Z Brassica rapa HOM05D003850 ORTHO05D004515 3.1e-96 356.7 533 49.9
CARHR253560 Cardamine hirsuta HOM05D003850 ORTHO05D004515 3.1e-96 356.7 525 50.9
BcaB01g01757 Brassica carinata HOM05D003850 ORTHO05D004515 1.0e-94 351.7 515 48.2
BcaC04g21251 Brassica carinata HOM05D003850 ORTHO05D004515 1.0e-94 351.7 496 50.8
C09p33830 Brassica napus HOM05D003850 ORTHO05D004515 1.0e-94 351.7 496 50.8
Sp6g04900 Schrenkiella parvula HOM05D003850 ORTHO05D004515 5.5e-93 345.9 525 49.7
BcaB01g02623 Brassica carinata HOM05D003850 ORTHO05D004515 1.0e-91 341.7 370 54.6
Thhalv10028564m.g Eutrema salsugineum HOM05D003850 ORTHO05D004515 1.0e-91 341.7 519 49.1
Zm00001eb224360 Zea mays HOM05D003850 ORTHO05D004515 7.4e-90 335.5 468 48.9
CDE04G2591 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 1.7e-89 334.3 516 49.2
MELO3C012788.2 Cucumis melo HOM05D003850 ORTHO05D004515 2.4e-88 330.5 438 55.5
Hund23984 Selenicereus undatus HOM05D003850 ORTHO05D004515 2.6e-87 327.0 529 46.3
RcHm_v2.0_Chr5g0007791 Rosa chinensis HOM05D003850 ORTHO05D004515 3.2e-85 320.1 509 44.4
Mapoly0105s0015 Marchantia polymorpha HOM05D003850 ORTHO05D004515 8.0e-84 315.5 430 47.9
Lsat_1_v5_gn_7_13561 Lactuca sativa HOM05D003850 ORTHO05D004515 3.9e-83 313.2 481 49.3
Pp3c3_2280 Physcomitrium patens HOM05D003850 ORTHO05D004515 3.7e-81 306.6 545 40.2
FAN03G2951 Fragaria x ananassa HOM05D003850 ORTHO05D004515 3.1e-80 303.5 512 42.4
FAN21G1676 Fragaria x ananassa HOM05D003850 ORTHO05D004515 4.1e-80 303.1 512 42.4
Zm00001eb398520 Zea mays HOM05D003850 ORTHO05D004515 4.1e-80 303.1 507 40.6
FvH4_3g04782 Fragaria vesca HOM05D003850 ORTHO05D004515 7.0e-80 302.4 512 43.0
FAN11G3915 Fragaria x ananassa HOM05D003850 ORTHO05D004515 7.0e-80 302.4 506 43.1
FAN16G3024 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.2e-79 301.6 511 42.3
EL10Ac8g20176 Beta vulgaris HOM05D003850 ORTHO05D004515 1.7e-78 297.7 531 45.4
Lj8A171G42 Lonicera japonica HOM05D003850 ORTHO05D004515 5.0e-78 296.2 546 38.8
TPR.G34491 Trifolium pratense HOM05D003850 ORTHO05D004515 7.2e-77 292.4 193 69.9
DCAR_025996 Daucus carota HOM05D003850 ORTHO05D004515 1.2e-76 291.6 454 52.2
FvH4_2g22070 Fragaria vesca HOM05D003850 ORTHO05D004515 2.1e-76 290.8 501 40.1
Psat1g176560 Pisum sativum HOM05D003850 ORTHO05D004515 6.1e-76 289.3 458 46.5
Duzib235G1223 Durio zibethinus HOM05D003850 ORTHO05D004515 3.3e-74 283.5 397 55.4
AagrBONN_evm.TU.Sc2ySwM_228.4136 Anthoceros agrestis HOM05D003850 ORTHO05D004515 9.7e-74 282.0 353 47.6
FAN24G0125 Fragaria x ananassa HOM05D003850 ORTHO05D008045 2.4e-72 277.3 501 39.5
Medtr2g025620 Medicago truncatula HOM05D003850 ORTHO05D004515 4.1e-72 276.6 515 41.4
Peaxi162Scf00015g02110 Petunia axillaris HOM05D003850 ORTHO05D004515 4.7e-60 236.5 318 50.0
Dinv07398 Davidia involucrata HOM05D003850 ORTHO05D004515 8.0e-60 235.7 340 54.1
SEGI_38016 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 9.8e-58 228.8 307 48.5
QL09p006300 Quercus lobata HOM05D003850 ORTHO05D004515 2.4e-56 224.2 365 51.2
AUR62012783 Chenopodium quinoa HOM05D003850 ORTHO05D004515 4.1e-56 223.4 412 43.0
HPP92_001646 Vanilla planifolia HOM05D003850 ORTHO05D004515 3.5e-47 193.7 228 54.8
Sc17g0007710 Simmondsia chinensis HOM05D003850 ORTHO05D004515 1.4e-43 181.8 391 44.5
FAN25G2646 Fragaria x ananassa HOM05D003850 ORTHO05D004515 4.9e-41 173.3 475 32.8
TPR.G13041 Trifolium pratense HOM05D003850 ORTHO05D004515 1.7e-33 148.3 350 40.9
Lsat_1_v5_gn_5_64561 Lactuca sativa HOM05D003952 ORTHO05D004515 1.6e-31 141.7 190 56.3
CBR_g38333 Chara braunii HOM05D000019 ORTHO05D000002 6.6e-30 136.3 247 40.9
HPP92_001645 Vanilla planifolia HOM05D003850 ORTHO05D004515 8.6e-30 136.0 100 63.0
Gorai.002G145900 Gossypium raimondii HOM05D003850 ORTHO05D004515 2.8e-28 131.0 182 57.1
Actinidia11880 Actinidia chinensis HOM05D003850 ORTHO05D004515 4.7e-28 130.2 335 40.6
RcHm_v2.0_Chr6g0288941 Rosa chinensis HOM05D003850 ORTHO05D004515 6.4e-25 119.8 271 37.6
AagrBONN_evm.TU.Sc2ySwM_228.3786 Anthoceros agrestis HOM05D003850 ORTHO05D004515 3.1e-19 100.9 136 39.7
Lsat_1_v5_gn_3_78300 Lactuca sativa HOM05D002115 ORTHO05D002263 2.0e-18 98.2 57 82.5
Gohir.D01G119450 Gossypium hirsutum HOM05D003850 ORTHO05D004515 7.6e-18 96.3 92 66.3
Eucgr.A01650 Eucalyptus grandis HOM05D002251 ORTHO05D004515 1.2e-15 89.0 51 72.5
PSO339G5270 Papaver somniferum HOM05D003850 ORTHO05D004515 2.7e-15 87.8 58 65.5
VMungo0720G0179 Vigna mungo HOM05D003850 ORTHO05D004515 4.6e-15 87.0 51 74.5
TAR629G2548 Trochodendron aralioides HOM05D003850 ORTHO05D004515 1.1e-13 82.4 322 29.8
CAN.G1186.27 Capsicum annuum HOM05D001620 ORTHO05D005461 9.9e-10 69.3 59 55.9
SEGI_19210 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 4.2e-08 63.9 67 41.8
AagrBONN_evm.TU.Sc2ySwM_228.3787 Anthoceros agrestis HOM05D003850 ORTHO05D004515 4.6e-07 60.5 99 43.4


User provided reference genes

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