Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim13G0146600 Rhododendron simsii HOM05D003850 ORTHO05D004515 0.0e+00 1109.4 583 100.0
RhsimUnG0109100 Rhododendron simsii HOM05D003850 ORTHO05D004515 2.9e-281 971.5 583 90.7
vmacro03646 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 1.7e-167 593.6 600 59.3
CSS0032808 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 1.4e-137 494.2 584 55.0
QL05p069776 Quercus lobata HOM05D003850 ORTHO05D004515 5.2e-137 492.3 598 54.8
CSS0007684 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 1.3e-135 487.6 603 53.7
CANSAT56G0590 Cannabis sativa HOM05D003850 ORTHO05D004515 2.9e-135 486.5 580 54.1
Aqoxy1G04110 Aquilegia oxysepala HOM05D003850 ORTHO05D004515 9.2e-134 481.5 582 52.4
Duzib160G0220 Durio zibethinus HOM05D003850 ORTHO05D004515 1.2e-133 481.1 599 55.9
Nn1g03331 Nelumbo nucifera HOM05D003850 ORTHO05D004515 2.1e-133 480.3 580 54.0
TAR624G0821 Trochodendron aralioides HOM05D003850 ORTHO05D004515 2.0e-128 463.8 588 53.4
Thecc.06G232700 Theobroma cacao HOM05D003850 ORTHO05D004515 5.8e-128 462.2 603 52.4
Sed0003006 Sechium edule HOM05D003850 ORTHO05D004515 2.2e-127 460.3 571 53.8
Sopen11g006940 Solanum pennellii HOM05D003850 ORTHO05D004515 1.9e-126 457.2 574 51.9
Actinidia39269 Actinidia chinensis HOM05D003850 ORTHO05D004515 5.4e-126 455.7 417 63.3
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 7.1e-126 455.3 591 54.3
PSO210G4264 Papaver somniferum HOM05D003850 ORTHO05D004515 7.1e-126 455.3 602 51.5
Phvul.006G143600 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 2.3e-124 450.3 578 50.3
arahy.Tifrunner.gnm1.ann1.C17RPB Arachis hypogaea HOM05D003850 ORTHO05D004515 3.9e-124 449.5 586 49.7
Potri.006G009100 Populus trichocarpa HOM05D003850 ORTHO05D004515 3.9e-124 449.5 586 52.7
Manes.07G088900 Manihot esculenta HOM05D003850 ORTHO05D004515 8.7e-124 448.4 576 55.2
Potri.016G015100 Populus trichocarpa HOM05D003850 ORTHO05D004515 1.5e-123 447.6 584 50.9
RhsimUnG0025700 Rhododendron simsii HOM05D003850 ORTHO05D004515 5.6e-123 445.7 627 49.9
RhsimUnG0028500 Rhododendron simsii HOM05D003850 ORTHO05D004515 5.6e-123 445.7 627 49.9
arahy.Tifrunner.gnm1.ann1.IIR6TV Arachis hypogaea HOM05D003850 ORTHO05D004515 1.6e-122 444.1 586 49.5
TAR629G2665 Trochodendron aralioides HOM05D003850 ORTHO05D004515 2.8e-122 443.4 609 47.5
Migut.M01390 Erythranthe guttata HOM05D003850 ORTHO05D004515 4.8e-122 442.6 588 50.3
CiPaw.09G102000 Carya illinoinensis HOM05D003850 ORTHO05D004515 6.2e-122 442.2 590 50.2
Nitab4.5_0001198g0010 Nicotiana tabacum HOM05D003850 ORTHO05D004515 1.8e-121 440.7 587 49.7
Prupe.4G011300 Prunus persica HOM05D003850 ORTHO05D004515 1.8e-121 440.7 588 52.9
MSTRG.7170 Avicennia marina HOM05D003850 ORTHO05D004515 2.4e-121 440.3 587 50.8
Ciclev10014841m.g Citrus clementina HOM05D003850 ORTHO05D004515 3.1e-121 439.9 582 51.5
Ca_00718_v3 Cicer arietinum L. HOM05D003850 ORTHO05D004515 4.0e-121 439.5 583 48.2
SGA_v2.0_scaffold4G01878 Striga asiatica HOM05D003850 ORTHO05D004515 4.0e-121 439.5 586 53.8
Glyma.09G009900 Glycine max HOM05D003850 ORTHO05D004515 5.3e-121 439.1 577 49.9
Lalb_Chr20g0119201 Lupinus albus HOM05D003850 ORTHO05D004515 2.0e-120 437.2 580 47.9
PSO302G0165 Papaver somniferum HOM05D003850 ORTHO05D004515 9.9e-120 434.9 600 49.7
Atru.chr1.2461 Acer truncatum HOM05D003850 ORTHO05D004515 1.4e-118 431.0 587 49.7
unitig_748.g7103 Utricularia gibba HOM05D003850 ORTHO05D004515 4.2e-118 429.5 602 52.2
arahy.Tifrunner.gnm1.ann1.97WSNQ Arachis hypogaea HOM05D003850 ORTHO05D004515 1.6e-117 427.6 592 51.7
CsaV3_3G028740 Cucumis sativus L. HOM05D003850 ORTHO05D004515 1.6e-117 427.6 573 52.4
GSVIVG01003352001 Vitis vinifera HOM05D003850 ORTHO05D004515 2.1e-117 427.2 586 52.6
VMungo1215G3075 Vigna mungo HOM05D003850 ORTHO05D004515 2.7e-117 426.8 586 51.0
Nitab4.5_0000143g0310 Nicotiana tabacum HOM05D003850 ORTHO05D004515 1.0e-116 424.9 584 48.5
Gorai.010G186300 Gossypium raimondii HOM05D003850 ORTHO05D004515 3.9e-116 422.9 594 50.8
Gohir.A06G153120 Gossypium hirsutum HOM05D003850 ORTHO05D004515 6.6e-116 422.2 593 50.3
Oeu002760.2 Olea europaea HOM05D003850 ORTHO05D004515 6.6e-116 422.2 622 51.1
Glyma.15G114200 Glycine max HOM05D003850 ORTHO05D004515 8.7e-116 421.8 582 47.4
Cc09_g00920 Coffea canephora HOM05D003850 ORTHO05D004515 1.5e-115 421.0 598 51.5
TWI63G0294 Tripterygium wilfordii HOM05D003850 ORTHO05D004515 2.1e-114 417.2 588 52.7
SalBow8G5272 Salvia bowleyana HOM05D003850 ORTHO05D004515 1.8e-113 414.1 598 48.7
THA.LOC104812992 Tarenaya hassleriana HOM05D003850 ORTHO05D004515 2.4e-113 413.7 592 45.9
Gohir.D06G159600 Gossypium hirsutum HOM05D003850 ORTHO05D004515 3.1e-113 413.3 594 50.3
ClCG07G001740 Citrullus lanatus HOM05D003850 ORTHO05D004515 6.9e-113 412.1 569 51.0
Lj2A262G45 Lonicera japonica HOM05D003850 ORTHO05D004515 9.0e-113 411.8 581 49.7
Eucgr.E03951 Eucalyptus grandis HOM05D003850 ORTHO05D004515 1.2e-112 411.4 588 48.5
MBI16_g42266_MAGBIO Magnolia biondii HOM05D003850 ORTHO05D004515 1.7e-111 407.5 589 47.5
HPP92_001629 Vanilla planifolia HOM05D003850 ORTHO05D004515 6.4e-111 405.6 587 46.3
Phvul.003G083500 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 8.4e-111 405.2 587 48.7
vmacro15772 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 8.4e-111 405.2 612 49.3
Solyc11g012150.3 Solanum lycopersicum HOM05D003850 ORTHO05D004515 1.1e-110 404.8 538 50.9
VMungo0540G1287 Vigna mungo HOM05D003850 ORTHO05D004515 1.1e-110 404.8 579 47.8
Oeu044421.3 Olea europaea HOM05D003850 ORTHO05D004515 1.4e-110 404.4 384 63.8
PGSC0003DMG400013344 Solanum tuberosum HOM05D003850 ORTHO05D004515 1.9e-110 404.1 537 50.5
arahy.Tifrunner.gnm1.ann1.0C9QHL Arachis hypogaea HOM05D003850 ORTHO05D004515 4.6e-109 399.4 590 48.6
Sabra06G0006900 Salix brachista HOM05D003850 ORTHO05D004515 3.0e-108 396.7 581 48.7
Sabra16G0017100 Salix brachista HOM05D003850 ORTHO05D004515 3.3e-107 393.3 597 47.9
PGR102G0753 Punica granatum HOM05D003850 ORTHO05D004515 1.3e-106 391.3 576 48.1
Cpa.g.sc75.120 Carica papaya HOM05D003850 ORTHO05D004515 1.6e-106 391.0 566 51.1
Medtr2g025590 Medicago truncatula HOM05D003850 ORTHO05D004515 8.1e-106 388.7 586 47.3
TPR.G3343 Trifolium pratense HOM05D003850 ORTHO05D004515 8.1e-106 388.7 608 44.9
MD05G1357300 Malus domestica HOM05D003850 ORTHO05D004515 3.1e-105 386.7 593 47.9
COL.COLO4_31876 Corchorus olitorius HOM05D003850 ORTHO05D004515 5.3e-105 386.0 604 46.5
AL6G47570 Arabidopsis lyrata HOM05D003850 ORTHO05D004515 2.0e-104 384.0 581 49.2
ECA233G3046 Erigeron canadensis HOM05D003850 ORTHO05D004515 2.0e-104 384.0 570 47.7
Haze_08659 Corylus avellana HOM05D003850 ORTHO05D004515 5.8e-104 382.5 601 47.1
Sabra16G0000900 Salix brachista HOM05D003850 ORTHO05D004515 5.8e-104 382.5 593 43.2
CiPaw.10G077600 Carya illinoinensis HOM05D003850 ORTHO05D004515 7.6e-104 382.1 550 49.1
PSO339G3925 Papaver somniferum HOM05D003850 ORTHO05D004515 1.0e-103 381.7 568 48.6
Aa31LG9G10040 Aethionema arabicum HOM05D003850 ORTHO05D004515 3.2e-102 376.7 612 46.4
Lj6g0013016 Lotus japonicus HOM05D003850 ORTHO05D004515 3.2e-102 376.7 587 47.4
SEGI_18521 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 4.6e-101 372.9 595 44.4
FAN25G3770 Fragaria x ananassa HOM05D003850 ORTHO05D004515 7.9e-101 372.1 603 42.8
FvH4_3g01042 Fragaria vesca HOM05D003850 ORTHO05D004515 1.0e-100 371.7 569 44.6
CAN.G1186.28 Capsicum annuum HOM05D003850 ORTHO05D004515 1.3e-100 371.3 603 43.6
AT4G12610 Arabidopsis thaliana HOM05D003850 ORTHO05D004515 2.5e-99 367.1 573 47.5
Cfa000110 Carpinus fangiana HOM05D003850 ORTHO05D004515 9.6e-99 365.2 587 47.9
AUR62021872 Chenopodium quinoa HOM05D003850 ORTHO05D004515 1.6e-98 364.4 596 43.8
Peaxi162Scf00558g00516 Petunia axillaris HOM05D003850 ORTHO05D004515 2.4e-97 360.5 529 48.4
ATR0751G086 Amborella trichopoda HOM05D003850 ORTHO05D004515 3.1e-97 360.1 583 44.9
Carub.0006s3188 Capsella rubella HOM05D003850 ORTHO05D004515 4.5e-96 356.3 580 46.9
HanXRQChr15g0470091 Helianthus annuus HOM05D003850 ORTHO05D004515 3.8e-95 353.2 553 47.9
BraA09t38246Z Brassica rapa HOM05D003850 ORTHO05D004515 1.1e-94 351.7 574 42.9
FAN21G1422 Fragaria x ananassa HOM05D003850 ORTHO05D004515 9.3e-94 348.6 589 42.4
SHI24464 Sapria himalayana HOM05D003850 ORTHO05D004515 1.2e-93 348.2 572 43.0
BolC9t56221H Brassica oleracea HOM05D003850 ORTHO05D004515 2.7e-93 347.1 564 46.6
RcHm_v2.0_Chr5g0001581 Rosa chinensis HOM05D003850 ORTHO05D004515 6.1e-93 345.9 578 45.8
Lj4g0025543 Lotus japonicus HOM05D003850 ORTHO05D004515 1.5e-91 341.3 581 43.2
MD10G1331000 Malus domestica HOM05D003850 ORTHO05D004515 9.7e-91 338.6 549 46.6
A09p26740 Brassica napus HOM05D003850 ORTHO05D004515 1.4e-89 334.7 563 41.9
A03p29830 Brassica napus HOM05D003850 ORTHO05D004515 2.4e-89 334.0 585 45.5
C03p36090 Brassica napus HOM05D003850 ORTHO05D004515 2.4e-89 334.0 585 45.3
CDE06G1774 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 2.4e-89 334.0 388 53.1
BcaC01g04577 Brassica carinata HOM05D003850 ORTHO05D004515 3.1e-89 333.6 587 45.1
BolC3t15918H Brassica oleracea HOM05D003850 ORTHO05D004515 3.1e-89 333.6 587 45.1
BraA03t12173Z Brassica rapa HOM05D003850 ORTHO05D004515 4.1e-89 333.2 587 45.3
CARHR253560 Cardamine hirsuta HOM05D003850 ORTHO05D004515 4.1e-89 333.2 579 46.1
BcaB01g01757 Brassica carinata HOM05D003850 ORTHO05D004515 1.3e-87 328.2 569 43.6
BcaC04g21251 Brassica carinata HOM05D003850 ORTHO05D004515 1.3e-87 328.2 550 45.8
C09p33830 Brassica napus HOM05D003850 ORTHO05D004515 1.3e-87 328.2 550 45.8
Sp6g04900 Schrenkiella parvula HOM05D003850 ORTHO05D004515 7.2e-86 322.4 579 45.1
BcaB01g02623 Brassica carinata HOM05D003850 ORTHO05D004515 1.4e-84 318.2 424 47.6
Thhalv10028564m.g Eutrema salsugineum HOM05D003850 ORTHO05D004515 1.4e-84 318.2 573 44.5
Zm00001eb224360 Zea mays HOM05D003850 ORTHO05D004515 9.7e-83 312.0 522 43.9
CDE04G2591 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 2.2e-82 310.8 570 44.6
MELO3C012788.2 Cucumis melo HOM05D003850 ORTHO05D004515 3.1e-81 307.0 492 49.4
Hund23984 Selenicereus undatus HOM05D003850 ORTHO05D004515 3.4e-80 303.5 583 42.0
RcHm_v2.0_Chr5g0007791 Rosa chinensis HOM05D003850 ORTHO05D004515 6.5e-79 299.3 563 40.1
Mapoly0105s0015 Marchantia polymorpha HOM05D003850 ORTHO05D004515 7.9e-77 292.4 484 43.0
Lsat_1_v5_gn_7_13561 Lactuca sativa HOM05D003850 ORTHO05D004515 3.9e-76 290.0 535 44.3
DCAR_025996 Daucus carota HOM05D003850 ORTHO05D004515 5.2e-76 289.7 438 53.9
Duzib235G1223 Durio zibethinus HOM05D003850 ORTHO05D004515 3.7e-74 283.5 397 55.4
Pp3c3_2280 Physcomitrium patens HOM05D003850 ORTHO05D004515 4.8e-74 283.1 599 36.6
FAN03G2951 Fragaria x ananassa HOM05D003850 ORTHO05D004515 8.2e-74 282.3 566 38.3
FAN21G1676 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.1e-73 282.0 566 38.3
Zm00001eb398520 Zea mays HOM05D003850 ORTHO05D004515 1.1e-73 282.0 560 36.6
FvH4_3g04782 Fragaria vesca HOM05D003850 ORTHO05D004515 1.4e-73 281.6 566 38.9
FAN11G3915 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.8e-73 281.2 560 38.9
FAN16G3024 Fragaria x ananassa HOM05D003850 ORTHO05D004515 2.4e-73 280.8 565 38.2
EL10Ac8g20176 Beta vulgaris HOM05D003850 ORTHO05D004515 2.2e-71 274.2 585 41.2
Lj8A171G42 Lonicera japonica HOM05D003850 ORTHO05D004515 6.5e-71 272.7 600 35.3
FvH4_2g22070 Fragaria vesca HOM05D003850 ORTHO05D004515 1.9e-70 271.2 554 36.5
TPR.G34491 Trifolium pratense HOM05D003850 ORTHO05D004515 9.4e-70 268.9 247 54.7
Psat1g176560 Pisum sativum HOM05D003850 ORTHO05D004515 8.0e-69 265.8 512 41.6
AagrBONN_evm.TU.Sc2ySwM_228.4136 Anthoceros agrestis HOM05D003850 ORTHO05D004515 1.3e-66 258.5 407 41.3
FAN24G0125 Fragaria x ananassa HOM05D003850 ORTHO05D008045 2.2e-66 257.7 554 35.9
Medtr2g025620 Medicago truncatula HOM05D003850 ORTHO05D004515 5.3e-65 253.1 569 37.4
Dinv07398 Davidia involucrata HOM05D003850 ORTHO05D004515 8.8e-60 235.7 340 54.1
QL09p006300 Quercus lobata HOM05D003850 ORTHO05D004515 2.7e-56 224.2 365 51.2
AUR62012783 Chenopodium quinoa HOM05D003850 ORTHO05D004515 3.5e-56 223.8 412 43.0
Peaxi162Scf00015g02110 Petunia axillaris HOM05D003850 ORTHO05D004515 4.2e-54 216.9 371 42.9
SEGI_38016 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 1.3e-50 205.3 361 41.3
HPP92_001646 Vanilla planifolia HOM05D003850 ORTHO05D004515 3.8e-47 193.7 228 54.8
Sc17g0007710 Simmondsia chinensis HOM05D003850 ORTHO05D004515 1.5e-43 181.8 391 44.5
FAN25G2646 Fragaria x ananassa HOM05D003850 ORTHO05D004515 9.8e-35 152.5 529 29.7
TPR.G13041 Trifolium pratense HOM05D003850 ORTHO05D004515 1.9e-33 148.3 350 40.9
Lsat_1_v5_gn_5_64561 Lactuca sativa HOM05D003952 ORTHO05D004515 1.7e-31 141.7 190 56.3
HPP92_001645 Vanilla planifolia HOM05D003850 ORTHO05D004515 9.5e-30 136.0 100 63.0
Gorai.002G145900 Gossypium raimondii HOM05D003850 ORTHO05D004515 3.1e-28 131.0 182 57.1
Actinidia11880 Actinidia chinensis HOM05D003850 ORTHO05D004515 5.2e-28 130.2 335 40.6
RcHm_v2.0_Chr6g0288941 Rosa chinensis HOM05D003850 ORTHO05D004515 2.7e-24 117.9 258 37.6
CBR_g38333 Chara braunii HOM05D000019 ORTHO05D000002 3.9e-23 114.0 327 30.6
Lsat_1_v5_gn_3_78300 Lactuca sativa HOM05D002115 ORTHO05D002263 2.2e-18 98.2 57 82.5
Gohir.D01G119450 Gossypium hirsutum HOM05D003850 ORTHO05D004515 8.4e-18 96.3 92 66.3
Eucgr.A01650 Eucalyptus grandis HOM05D002251 ORTHO05D004515 1.3e-15 89.0 51 72.5
PSO339G5270 Papaver somniferum HOM05D003850 ORTHO05D004515 3.0e-15 87.8 58 65.5
VMungo0720G0179 Vigna mungo HOM05D003850 ORTHO05D004515 3.9e-15 87.4 51 74.5
TAR629G2548 Trochodendron aralioides HOM05D003850 ORTHO05D004515 3.6e-13 80.9 99 43.4
AagrBONN_evm.TU.Sc2ySwM_228.3786 Anthoceros agrestis HOM05D003850 ORTHO05D004515 5.2e-12 77.0 190 28.4
CAN.G1186.27 Capsicum annuum HOM05D001620 ORTHO05D005461 3.2e-09 67.8 57 56.1
SEGI_19210 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 4.6e-08 63.9 67 41.8
AagrBONN_evm.TU.Sc2ySwM_228.3787 Anthoceros agrestis HOM05D003850 ORTHO05D004515 5.1e-07 60.5 99 43.4


User provided reference genes

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