Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim02G0076600 Rhododendron simsii HOM05D004358 ORTHO05D004960 0.0e+00 1148.7 577 100.0
vmacro15647 Vaccinium macrocarpon HOM05D004358 ORTHO05D004960 3.2e-163 579.3 559 59.6
Actinidia39855 Actinidia chinensis HOM05D004358 ORTHO05D004960 1.0e-148 531.2 525 59.0
Dinv22724 Davidia involucrata HOM05D004358 ORTHO05D004960 8.8e-137 491.5 498 56.4
Cfa015153 Carpinus fangiana HOM05D004358 ORTHO05D004960 5.4e-126 455.7 498 52.8
TAR362G1164 Trochodendron aralioides HOM05D004358 ORTHO05D004960 1.0e-121 441.4 523 51.4
Nitab4.5_0005570g0020 Nicotiana tabacum HOM05D004358 ORTHO05D004960 2.3e-121 440.3 524 51.9
GSVIVG01010748001 Vitis vinifera HOM05D004358 ORTHO05D004960 3.0e-121 439.9 517 51.1
Potri.007G127600 Populus trichocarpa HOM05D004358 ORTHO05D004960 2.0e-120 437.2 522 49.2
Ciclev10020813m.g Citrus clementina HOM05D004358 ORTHO05D004960 8.3e-119 431.8 486 50.4
TWI59G0142 Tripterygium wilfordii HOM05D004358 ORTHO05D004960 3.5e-117 426.4 504 48.8
CiPaw.02G055200 Carya illinoinensis HOM05D004358 ORTHO05D004960 6.0e-117 425.6 497 49.9
MD04G1007400 Malus domestica HOM05D004358 ORTHO05D004960 1.3e-116 424.5 498 49.4
SalBow7G0323 Salvia bowleyana HOM05D004358 ORTHO05D004960 1.7e-116 424.1 496 50.4
MSTRG.6615 Avicennia marina HOM05D004358 ORTHO05D004960 8.6e-116 421.8 532 48.5
Cc00_g17220 Coffea canephora HOM05D004358 ORTHO05D004960 1.1e-115 421.4 512 49.2
Solyc06g073400.3 Solanum lycopersicum HOM05D004358 ORTHO05D004960 2.5e-115 420.2 526 47.9
Prupe.1G191600 Prunus persica HOM05D004358 ORTHO05D004960 2.8e-114 416.8 498 49.2
Duzib151G0384 Durio zibethinus HOM05D004358 ORTHO05D004960 3.6e-114 416.4 502 49.2
Sopen06g029780 Solanum pennellii HOM05D004358 ORTHO05D004960 8.0e-114 415.2 526 47.5
Manes.04G041200 Manihot esculenta HOM05D004358 ORTHO05D004960 3.4e-112 409.8 515 48.2
PSO675G5046 Papaver somniferum HOM05D004358 ORTHO05D004960 1.1e-110 404.8 500 49.0
PGR142G0453 Punica granatum HOM05D004358 ORTHO05D004960 1.1e-110 404.8 516 47.1
arahy.Tifrunner.gnm1.ann1.CJKM5C Arachis hypogaea HOM05D004358 ORTHO05D004960 1.9e-110 404.1 383 57.4
PSO732G0278 Papaver somniferum HOM05D004358 ORTHO05D004960 1.9e-110 404.1 500 48.8
COL.COLO4_02723 Corchorus olitorius HOM05D004358 ORTHO05D004960 5.4e-110 402.5 501 47.5
RcHm_v2.0_Chr4g0407021 Rosa chinensis HOM05D004358 ORTHO05D004960 7.0e-110 402.1 472 50.4
Phvul.011G055100 Phaseolus vulgaris HOM05D004358 ORTHO05D004960 2.1e-109 400.6 381 58.5
FAN07G2248 Fragaria x ananassa HOM05D004358 ORTHO05D004960 4.6e-109 399.4 378 58.2
Sabra07G0103600 Salix brachista HOM05D004358 ORTHO05D004960 2.3e-108 397.1 525 46.9
CSS0013619 Camellia sinensis var. sinensis HOM05D004358 ORTHO05D004960 3.9e-108 396.4 537 46.9
CANSAT78G2120 Cannabis sativa HOM05D004358 ORTHO05D004960 3.9e-108 396.4 503 48.3
Lalb_Chr01g0003211 Lupinus albus HOM05D004358 ORTHO05D004960 8.6e-108 395.2 379 56.5
FAN12G1706 Fragaria x ananassa HOM05D004358 ORTHO05D004960 2.5e-107 393.7 378 57.1
Glyma.11G128600 Glycine max HOM05D004358 ORTHO05D004960 2.5e-107 393.7 382 57.9
Peaxi162Scf00375g00513 Petunia axillaris HOM05D004358 ORTHO05D004960 9.5e-107 391.7 520 48.3
FAN12G4165 Fragaria x ananassa HOM05D004358 ORTHO05D004960 1.2e-106 391.3 378 56.6
FvH4_4g10690 Fragaria vesca HOM05D004358 ORTHO05D004960 4.7e-106 389.4 378 56.3
VMungo1127G0908 Vigna mungo HOM05D004358 ORTHO05D004960 4.7e-106 389.4 381 56.2
TAR636G1513 Trochodendron aralioides HOM05D004358 ORTHO05D004960 6.2e-106 389.0 335 62.4
PSO732G0822 Papaver somniferum HOM05D004358 ORTHO05D004960 1.1e-105 388.3 522 46.6
Sc13g0005360 Simmondsia chinensis HOM05D004358 ORTHO05D004960 2.3e-105 387.1 518 47.1
Atru.chr3.1531 Acer truncatum HOM05D004358 ORTHO05D004960 5.2e-105 386.0 332 60.5
Lj3g0009399 Lotus japonicus HOM05D004358 ORTHO05D004960 6.8e-105 385.6 512 47.3
Psat7g213960 Pisum sativum HOM05D004358 ORTHO05D004960 8.9e-105 385.2 409 53.5
Hund03152 Selenicereus undatus HOM05D004358 ORTHO05D004960 2.0e-104 384.0 518 46.1
TPR.G34203 Trifolium pratense HOM05D004358 ORTHO05D004960 2.6e-104 383.6 381 56.7
CAN.G65.181 Capsicum annuum HOM05D004358 ORTHO05D004960 9.9e-104 381.7 486 47.3
THA.LOC104827388 Tarenaya hassleriana HOM05D004358 ORTHO05D004960 4.9e-103 379.4 383 54.0
Ah.13g072910 Amaranthus hybridus HOM05D004358 ORTHO05D004960 6.4e-103 379.0 499 44.5
AT2G31450 Arabidopsis thaliana HOM05D004358 ORTHO05D004960 1.1e-102 378.3 505 44.8
unitig_8.g4603 Utricularia gibba HOM05D004358 ORTHO05D004960 1.1e-102 378.3 376 55.6
Thecc.04G185400 Theobroma cacao HOM05D004358 ORTHO05D004960 1.4e-102 377.9 500 46.4
Gorai.011G146700 Gossypium raimondii HOM05D004358 ORTHO05D004960 3.2e-102 376.7 509 47.0
AUR62002292 Chenopodium quinoa HOM05D004358 ORTHO05D004960 5.4e-102 375.9 337 57.0
Medtr4g067060 Medicago truncatula HOM05D004358 ORTHO05D004960 1.6e-101 374.4 383 55.4
MELO3C017721.2 Cucumis melo HOM05D004358 ORTHO05D004960 6.0e-101 372.5 503 46.3
CARHR125100 Cardamine hirsuta HOM05D004358 ORTHO05D004960 7.8e-101 372.1 490 44.7
Atru.chr3.1534 Acer truncatum HOM05D004358 ORTHO05D004960 2.3e-100 370.5 339 58.1
AL4G26720 Arabidopsis lyrata HOM05D004358 ORTHO05D004960 1.1e-99 368.2 495 44.4
Ca_20780_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 1.9e-99 367.5 382 54.5
Thhalv10007955m.g Eutrema salsugineum HOM05D004358 ORTHO05D004960 7.3e-99 365.5 386 50.0
HanXRQChr06g0172341 Helianthus annuus HOM05D004358 ORTHO05D004960 9.5e-99 365.2 503 44.5
Carub.0001s0527 Capsella rubella HOM05D004358 ORTHO05D004960 1.6e-98 364.4 381 50.9
BcaB01g04044 Brassica carinata HOM05D004358 ORTHO05D004960 2.1e-98 364.0 389 50.1
Carub.0004s1278 Capsella rubella HOM05D004358 ORTHO05D004960 2.8e-98 363.6 383 51.2
Sed0019525 Sechium edule HOM05D004358 ORTHO05D004960 2.8e-98 363.6 384 52.6
Aa31LG5G5430 Aethionema arabicum HOM05D004358 ORTHO05D004960 3.6e-98 363.2 493 45.4
C03p20720 Brassica napus HOM05D004358 ORTHO05D004960 6.2e-98 362.5 388 50.3
BolC3t14451H Brassica oleracea HOM05D004358 ORTHO05D004960 6.2e-98 362.5 388 50.3
CsaV3_4G003300 Cucumis sativus L. HOM05D004358 ORTHO05D004960 8.1e-98 362.1 502 45.4
Thhalv10016815m.g Eutrema salsugineum HOM05D004358 ORTHO05D004960 1.1e-97 361.7 506 42.7
Sp4g13930 Schrenkiella parvula HOM05D004358 ORTHO05D004960 1.1e-97 361.7 497 43.9
Nitab4.5_0003132g0140 Nicotiana tabacum HOM05D004358 ORTHO05D004960 3.1e-97 360.1 524 46.0
AL1G15860 Arabidopsis lyrata HOM05D004358 ORTHO05D004960 8.9e-97 358.6 381 50.7
BcaC01g05950 Brassica carinata HOM05D004358 ORTHO05D004960 2.0e-96 357.5 388 50.0
BraA09t42058Z Brassica rapa HOM05D004358 ORTHO05D005739 2.0e-96 357.5 386 50.5
BolC8t52682H Brassica oleracea HOM05D004358 ORTHO05D004960 4.4e-96 356.3 386 50.8
A09p67250 Brassica napus HOM05D004358 ORTHO05D004960 5.8e-96 355.9 384 50.5
BraA03t11028Z Brassica rapa HOM05D004358 ORTHO05D004960 2.9e-95 353.6 399 49.6
AT1G05900 Arabidopsis thaliana HOM05D004358 ORTHO05D004960 3.8e-95 353.2 385 49.9
Lsat_1_v5_gn_8_80540 Lactuca sativa HOM05D004358 ORTHO05D004960 3.8e-95 353.2 369 51.5
Gohir.D10G133000 Gossypium hirsutum HOM05D004358 ORTHO05D004960 1.1e-94 351.7 506 44.7
A03p17630 Brassica napus HOM05D004358 ORTHO05D004960 1.9e-94 350.9 405 48.4
Ciclev10020816m.g Citrus clementina HOM05D004358 ORTHO05D004960 1.9e-94 350.9 378 51.6
C08p51540 Brassica napus HOM05D004358 ORTHO05D004960 2.4e-94 350.5 382 50.8
ATR0686G198 Amborella trichopoda HOM05D004358 ORTHO05D004960 1.2e-93 348.2 389 48.6
SGA_v2.0_scaffold181G39728 Striga asiatica HOM05D004358 ORTHO05D004960 7.8e-93 345.5 523 44.2
BcaC07g42102 Brassica carinata HOM05D004358 ORTHO05D004960 2.3e-92 344.0 384 49.0
Hund03151 Selenicereus undatus HOM05D004358 ORTHO05D004960 1.1e-91 341.7 502 42.8
AUR62015399 Chenopodium quinoa HOM05D004358 ORTHO05D004960 1.9e-91 340.9 522 42.0
arahy.Tifrunner.gnm1.ann1.Z962T9 Arachis hypogaea HOM05D004358 ORTHO05D004960 2.1e-90 337.4 381 51.2
SHI24906 Sapria himalayana HOM05D004358 ORTHO05D004960 6.9e-89 332.4 372 50.8
Aqoxy7G00192 Aquilegia oxysepala HOM05D004358 ORTHO05D004960 2.0e-88 330.9 378 51.3
arahy.Tifrunner.gnm1.ann1.VZ0ARL Arachis hypogaea HOM05D004358 ORTHO05D004960 2.6e-88 330.5 353 51.0
Glyma.13G343700 Glycine max HOM05D004358 ORTHO05D004960 3.4e-88 330.1 345 53.9
ECA236G1172 Erigeron canadensis HOM05D004358 ORTHO05D004960 2.2e-87 327.4 473 44.0
Lj3g0017360 Lotus japonicus HOM05D004358 ORTHO05D004960 2.2e-87 327.4 334 52.4
QL10p048514 Quercus lobata HOM05D004358 ORTHO05D004960 2.9e-87 327.0 217 74.2
EL10Ac3g05922 Beta vulgaris HOM05D004358 ORTHO05D004960 9.3e-86 322.0 532 39.7
PGSC0003DMG401006099 Solanum tuberosum HOM05D004358 ORTHO05D004960 3.5e-85 320.1 335 50.7
Haze_01520 Corylus avellana HOM05D004358 ORTHO05D004960 4.6e-85 319.7 213 72.8
Zm00001eb406830 Zea mays HOM05D004358 ORTHO05D004960 4.6e-85 319.7 372 47.6
CAN.G749.19 Capsicum annuum HOM05D004358 ORTHO05D004960 7.8e-85 318.9 334 50.6
Ca_01263_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 2.3e-84 317.4 336 52.1
ECA236G3148 Erigeron canadensis HOM05D004358 ORTHO05D004960 3.0e-84 317.0 375 46.7
Medtr2g098660 Medicago truncatula HOM05D004358 ORTHO05D004960 3.0e-84 317.0 336 51.8
Sopen09g031880 Solanum pennellii HOM05D004358 ORTHO05D004960 5.1e-84 316.2 335 49.6
Peaxi162Scf00058g01717 Petunia axillaris HOM05D004358 ORTHO05D004960 3.3e-83 313.5 335 50.1
Nitab4.5_0001787g0060 Nicotiana tabacum HOM05D004358 ORTHO05D004960 1.3e-82 311.6 379 45.6
SMO347G0587 Selaginella moellendorffii HOM05D004358 ORTHO05D004960 1.6e-82 311.2 324 51.2
Nn1g09578 Nelumbo nucifera HOM05D004358 ORTHO05D004960 2.1e-82 310.8 297 56.2
Phvul.005G152500 Phaseolus vulgaris HOM05D004358 ORTHO05D004960 1.5e-80 304.7 361 48.8
arahy.Tifrunner.gnm1.ann1.98UW30 Arachis hypogaea HOM05D004358 ORTHO05D004960 4.9e-79 299.7 317 51.4
Migut.M00111 Erythranthe guttata HOM05D004358 ORTHO05D004960 2.4e-78 297.4 427 46.1
ClCG07G015600 Citrullus lanatus HOM05D004358 ORTHO05D004960 1.6e-77 294.7 500 41.4
Eucgr.H00376 Eucalyptus grandis HOM05D004358 ORTHO05D004960 1.6e-77 294.7 200 70.0
Nitab4.5_0000941g0030 Nicotiana tabacum HOM05D004358 ORTHO05D004960 2.1e-77 294.3 337 48.1
DCAR_028143 Daucus carota HOM05D004358 ORTHO05D004960 2.3e-76 290.8 218 66.1
Mapoly0058s0068 Marchantia polymorpha HOM05D004358 ORTHO05D004960 3.0e-76 290.4 348 46.6
Aqoxy7G00191 Aquilegia oxysepala HOM05D004358 ORTHO05D004960 6.7e-76 289.3 371 44.5
CARHR005460 Cardamine hirsuta HOM05D004358 ORTHO05D004960 6.7e-76 289.3 218 64.7
CBR_g29622 Chara braunii HOM05D004358 ORTHO05D004960 7.4e-75 285.8 380 42.4
Mapoly0058s0067 Marchantia polymorpha HOM05D004358 ORTHO05D004960 9.9e-72 275.4 325 46.8
Solyc09g083003.1 Solanum lycopersicum HOM05D004358 ORTHO05D004960 8.4e-71 272.3 211 62.1
Sp1g04740 Schrenkiella parvula HOM05D004358 ORTHO05D004960 4.0e-65 253.4 367 41.7
Psat1g007160 Pisum sativum HOM05D004358 ORTHO05D004960 1.2e-64 251.9 291 48.5
SalBow7G1435 Salvia bowleyana HOM05D004358 ORTHO05D004960 8.4e-63 245.7 161 72.0
Gohir.A10G133700 Gossypium hirsutum HOM05D004358 ORTHO05D004960 2.4e-57 227.6 369 43.4
CAN.G80.26 Capsicum annuum HOM05D004358 ORTHO05D004960 9.7e-51 205.7 232 48.7
Haze_27447 Corylus avellana HOM05D004358 ORTHO05D004960 1.0e-47 195.7 320 37.2
PGSC0003DMG401026906 Solanum tuberosum HOM05D004358 ORTHO05D004960 1.4e-46 191.8 137 67.2
Ca_18838_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 7.4e-43 179.5 144 60.4
Glyma.12G053100 Glycine max HOM05D004358 ORTHO05D004960 2.6e-40 171.0 140 62.9
Cfa026201 Carpinus fangiana HOM05D004358 ORTHO05D004960 8.5e-39 166.0 318 33.0
Rhsim02G0076400 Rhododendron simsii HOM05D004358 ORTHO05D004960 3.6e-37 160.6 94 85.1
Pp3c17_17810 Physcomitrium patens HOM05D004358 ORTHO05D004960 2.6e-35 154.5 352 30.1
DCAR_028139 Daucus carota HOM05D004358 ORTHO05D004960 1.2e-32 145.6 75 84.0
Lj3A203T17 Lonicera japonica HOM05D004358 ORTHO05D004960 3.5e-32 144.1 114 64.0
QL10p048520 Quercus lobata HOM05D004358 ORTHO05D004960 1.0e-31 142.5 290 38.6
AagrBONN_evm.TU.Sc2ySwM_368.679 Anthoceros agrestis HOM05D004358 ORTHO05D004960 1.5e-30 138.7 221 39.4
PGSC0003DMG402026906 Solanum tuberosum HOM05D004358 ORTHO05D004960 1.2e-29 135.6 225 40.0
SalBow1G3505 Salvia bowleyana HOM05D004358 ORTHO05D004960 1.0e-28 132.5 194 43.3
BcaC07g42101 Brassica carinata HOM05D004358 ORTHO05D004960 4.0e-28 130.6 157 47.1
Mapoly0058s0064 Marchantia polymorpha HOM05D004358 ORTHO05D004960 5.7e-27 126.7 124 51.6
Cpa.g.sc41.25 Carica papaya HOM05D004358 ORTHO05D004960 1.1e-25 122.5 75 74.7
Cpa.g.sc41.31 Carica papaya HOM05D004358 ORTHO05D004960 7.7e-24 116.3 73 72.6
Haze_01519 Corylus avellana HOM05D004358 ORTHO05D004960 4.7e-21 107.1 233 36.1
Oeu007466.1 Olea europaea HOM05D004358 ORTHO05D004960 2.6e-19 101.3 204 36.8
Gohir.D08G144100 Gossypium hirsutum HOM05D004358 ORTHO05D004960 1.8e-17 95.1 67 71.6
Solyc09g083007.1 Solanum lycopersicum HOM05D004358 ORTHO05D004960 3.8e-15 87.4 63 65.1
Glyma.15G030650 Glycine max HOM05D004358 ORTHO05D004960 4.2e-14 84.0 161 39.1
PGSC0003DMG402006099 Solanum tuberosum HOM05D004358 ORTHO05D004960 1.2e-13 82.4 65 58.5
CAN.G541.14 Capsicum annuum HOM05D004358 ORTHO05D004960 6.1e-13 80.1 63 61.9
CAN.G1292.3 Capsicum annuum HOM05D004358 ORTHO05D004960 5.2e-12 77.0 63 58.7
Ca_29315_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 2.0e-11 75.1 184 27.7
BcaC01g05951 Brassica carinata HOM05D004358 ORTHO05D004960 5.7e-11 73.6 91 44.0
Lj3C203G5 Lonicera japonica HOM05D009066 ORTHO05D004960 1.3e-10 72.4 37 86.5
Cre17.g732050 Chlamydomonas reinhardtii HOM05D004358 ORTHO05D004960 2.2e-10 71.6 178 26.4
PRCOL_00001550 Prasinoderma coloniale HOM05D004358 ORTHO05D004960 1.3e-07 62.4 110 32.7
Sabra07G0103800 Salix brachista HOM05D004358 ORTHO05D004960 1.3e-07 62.4 90 44.4
Pp3c18_200 Physcomitrium patens HOM05D006570 ORTHO05D008193 6.6e-07 60.1 181 25.4
vmacro09566 Vaccinium macrocarpon HOM05D000222 ORTHO05D051539 1.1e-06 59.3 32 87.5


User provided reference genes

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