Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0229331 Rosa chinensis HOM05D002182 ORTHO05D004671 4.4e-35 150.6 68 100.0
RcHm_v2.0_Chr2g0122231 Rosa chinensis HOM05D002182 ORTHO05D004671 3.7e-34 147.5 67 98.5
FvH4_1g24710 Fragaria vesca HOM05D002182 ORTHO05D004671 4.1e-33 144.1 67 95.5
FAN26G0537 Fragaria x ananassa HOM05D002182 ORTHO05D004671 4.1e-33 144.1 67 95.5
FAN19G2097 Fragaria x ananassa HOM05D002182 ORTHO05D004671 5.3e-33 143.7 67 94.0
Duzib264G0915 Durio zibethinus HOM05D002182 ORTHO05D004671 7.0e-33 143.3 67 91.0
Gorai.007G066700 Gossypium raimondii HOM05D002182 ORTHO05D004671 7.0e-33 143.3 67 91.0
Cfa002178 Carpinus fangiana HOM05D002182 ORTHO05D004671 3.5e-32 141.0 67 91.0
COL.COLO4_35815 Corchorus olitorius HOM05D002182 ORTHO05D004671 4.5e-32 140.6 67 89.6
Haze_25331 Corylus avellana HOM05D002182 ORTHO05D004671 4.5e-32 140.6 67 89.6
Gohir.D11G061900 Gossypium hirsutum HOM05D002182 ORTHO05D004671 5.9e-32 140.2 67 89.6
Manes.13G078050 Manihot esculenta HOM05D002182 ORTHO05D004671 5.9e-32 140.2 67 92.5
Prupe.4G275500 Prunus persica HOM05D002182 ORTHO05D004671 5.9e-32 140.2 67 89.6
Dinv35485 Davidia involucrata HOM05D002182 ORTHO05D004671 7.7e-32 139.8 67 89.6
QL10p041326 Quercus lobata HOM05D002182 ORTHO05D004671 7.7e-32 139.8 67 89.6
MD15G1134700 Malus domestica HOM05D002182 ORTHO05D004671 1.0e-31 139.4 67 91.0
PGR102G1182 Punica granatum HOM05D002182 ORTHO05D004671 1.3e-31 139.0 66 90.9
Thecc.01G137400 Theobroma cacao HOM05D002182 ORTHO05D004671 1.3e-31 139.0 67 86.6
CiPaw.04G079900 Carya illinoinensis HOM05D002182 ORTHO05D004671 2.2e-31 138.3 67 88.1
Potri.005G067100 Populus trichocarpa HOM05D002182 ORTHO05D004671 2.2e-31 138.3 67 88.1
Sabra05G0055200 Salix brachista HOM05D002182 ORTHO05D004671 2.2e-31 138.3 67 88.1
Cpa.g.sc37.4 Carica papaya HOM05D002182 ORTHO05D004671 2.9e-31 137.9 67 88.1
Lj4C830T7 Lonicera japonica HOM05D002182 ORTHO05D004671 2.9e-31 137.9 67 89.6
Lalb_Chr11g0068591 Lupinus albus HOM05D002182 ORTHO05D004671 2.9e-31 137.9 67 86.6
TWI79G1433 Tripterygium wilfordii HOM05D002182 ORTHO05D004671 5.0e-31 137.1 67 88.1
Nn5g28440 Nelumbo nucifera HOM05D002182 ORTHO05D004671 6.5e-31 136.7 67 88.1
GSVIVG01026459001 Vitis vinifera HOM05D002182 ORTHO05D004671 6.5e-31 136.7 67 86.6
Lj1g0008046 Lotus japonicus HOM05D002182 ORTHO05D004671 1.4e-30 135.6 67 86.6
CANSAT01G2275 Cannabis sativa HOM05D002182 ORTHO05D004671 1.9e-30 135.2 67 83.6
Eucgr.H05141 Eucalyptus grandis HOM05D002182 ORTHO05D004671 1.9e-30 135.2 66 87.9
arahy.Tifrunner.gnm1.ann1.K5KUZ3 Arachis hypogaea HOM05D002182 ORTHO05D004671 3.2e-30 134.4 67 82.1
Nitab4.5_0000120g0170 Nicotiana tabacum HOM05D002182 ORTHO05D004671 4.2e-30 134.0 67 85.1
Nitab4.5_0001277g0020 Nicotiana tabacum HOM05D002182 ORTHO05D004671 4.2e-30 134.0 67 85.1
Solyc05g014750.2 Solanum lycopersicum HOM05D002182 ORTHO05D004671 4.2e-30 134.0 67 85.1
Sopen05g009910 Solanum pennellii HOM05D002182 ORTHO05D004671 4.2e-30 134.0 67 85.1
TAR376G0522 Trochodendron aralioides HOM05D002182 ORTHO05D004671 5.5e-30 133.7 67 85.1
Atru.chr4.980 Acer truncatum HOM05D002182 ORTHO05D004671 7.2e-30 133.3 67 86.6
Actinidia20029 Actinidia chinensis HOM05D002182 ORTHO05D004671 7.2e-30 133.3 67 85.1
CAN.G163.2 Capsicum annuum HOM05D002182 ORTHO05D004671 7.2e-30 133.3 67 83.6
Ca_16971_v3 Cicer arietinum L. HOM05D002182 ORTHO05D004671 7.2e-30 133.3 66 80.3
CsaV3_3G039390 Cucumis sativus L. HOM05D002182 ORTHO05D004671 7.2e-30 133.3 66 84.8
PGSC0003DMG402017464 Solanum tuberosum HOM05D002182 ORTHO05D004671 7.2e-30 133.3 67 83.6
arahy.Tifrunner.gnm1.ann1.XVSB6Y Arachis hypogaea HOM05D002182 ORTHO05D004671 9.4e-30 132.9 67 80.6
VMungo1309G0220 Vigna mungo HOM05D002182 ORTHO05D004671 1.2e-29 132.5 67 83.6
MELO3C009682.2 Cucumis melo HOM05D002182 ORTHO05D004671 1.6e-29 132.1 66 83.3
Peaxi162Scf00151g00610 Petunia axillaris HOM05D002182 ORTHO05D004671 2.1e-29 131.7 66 84.8
vmacro12743 Vaccinium macrocarpon HOM05D002182 ORTHO05D004671 2.1e-29 131.7 67 83.6
Sed0010212 Sechium edule HOM05D002182 ORTHO05D004671 2.7e-29 131.3 66 81.8
Migut.H00803 Erythranthe guttata HOM05D002182 ORTHO05D004671 6.1e-29 130.2 67 79.1
CSS0026830 Camellia sinensis var. sinensis HOM05D002182 ORTHO05D004671 8.0e-29 129.8 67 82.1
Phvul.009G154850 Phaseolus vulgaris HOM05D002182 ORTHO05D004671 8.0e-29 129.8 67 79.1
Ah.06g191020 Amaranthus hybridus HOM05D002182 ORTHO05D004671 1.0e-28 129.4 67 82.1
ClCG10G017010 Citrullus lanatus HOM05D002182 ORTHO05D004671 1.0e-28 129.4 66 81.8
MBI07_g47060_MAGBIO Magnolia biondii HOM05D002182 ORTHO05D004671 1.4e-28 129.0 67 80.6
Rhsim10G0124200 Rhododendron simsii HOM05D002182 ORTHO05D004671 1.4e-28 129.0 67 83.6
Sc16g0009510 Simmondsia chinensis HOM05D002182 ORTHO05D004671 1.4e-28 129.0 66 83.3
TPR.G33581 Trifolium pratense HOM05D002182 ORTHO05D004671 1.4e-28 129.0 66 78.8
Hund21801 Selenicereus undatus HOM05D002182 ORTHO05D004671 1.8e-28 128.6 67 80.6
Oeu050090.2 Olea europaea HOM05D002182 ORTHO05D004671 2.3e-28 128.3 66 80.3
EL10Ac4g09621 Beta vulgaris HOM05D002182 ORTHO05D004671 3.0e-28 127.9 67 80.6
Medtr3g096640 Medicago truncatula HOM05D002182 ORTHO05D004671 3.9e-28 127.5 66 80.3
Os03g0165000 Oryza sativa ssp. japonica HOM05D002182 ORTHO05D004671 5.2e-28 127.1 67 77.6
SHI11490 Sapria himalayana HOM05D002182 ORTHO05D004671 5.2e-28 127.1 67 77.6
Aa31LG1G17970 Aethionema arabicum HOM05D002182 ORTHO05D004671 6.7e-28 126.7 67 79.1
Carub.0008s2470 Capsella rubella HOM05D002182 ORTHO05D004671 8.8e-28 126.3 67 79.1
Psat5g060640 Pisum sativum HOM05D002182 ORTHO05D004671 8.8e-28 126.3 66 80.3
THA.LOC104818422 Tarenaya hassleriana HOM05D002182 ORTHO05D004671 1.1e-27 125.9 67 77.6
HPP92_005923 Vanilla planifolia HOM05D002182 ORTHO05D004671 1.1e-27 125.9 67 79.1
AL8G41160 Arabidopsis lyrata HOM05D002182 ORTHO05D004671 1.5e-27 125.6 67 77.6
AT5G63920 Arabidopsis thaliana HOM05D002182 ORTHO05D004671 1.5e-27 125.6 67 77.6
ATR1001G007 Amborella trichopoda HOM05D002182 ORTHO05D004671 2.6e-27 124.8 66 74.2
Glyma.06G155600 Glycine max HOM05D002182 ORTHO05D004671 2.6e-27 124.8 67 77.6
Ciclev10003112m.g Citrus clementina HOM05D002182 ORTHO05D004671 3.3e-27 124.4 67 82.1
Cc07_g19240 Coffea canephora HOM05D002182 ORTHO05D004671 4.4e-27 124.0 67 77.6
Zm00001eb005010 Zea mays HOM05D002182 ORTHO05D004671 5.7e-27 123.6 67 77.6
CDE09G0651 Ceratophyllum demersum HOM05D002182 ORTHO05D004671 9.7e-27 122.9 67 73.1
A02p43050 Brassica napus HOM05D002182 ORTHO05D004671 1.3e-26 122.5 68 77.9
BraA02t09226Z Brassica rapa HOM05D002182 ORTHO05D004671 1.3e-26 122.5 68 77.9
SGA_v2.0_scaffold54G19590 Striga asiatica HOM05D002182 ORTHO05D004671 1.3e-26 122.5 66 75.8
MBI07_g33104_MAGBIO Magnolia biondii HOM05D002182 ORTHO05D004671 1.7e-26 122.1 64 81.2
SEGI_35171 Sequoiadendron giganteum HOM05D002182 ORTHO05D004671 3.7e-26 120.9 67 73.1
BcaB07g29709 Brassica carinata HOM05D002182 ORTHO05D004671 6.3e-26 120.2 68 76.5
BcaC03g18232 Brassica carinata HOM05D002182 ORTHO05D004671 6.3e-26 120.2 68 76.5
C02p63010 Brassica napus HOM05D002182 ORTHO05D004671 6.3e-26 120.2 68 76.5
BolC2t12375H Brassica oleracea HOM05D002182 ORTHO05D004671 6.3e-26 120.2 68 76.5
CARHR277840 Cardamine hirsuta HOM05D002182 ORTHO05D004671 6.3e-26 120.2 68 75.0
Cc07_g20300 Coffea canephora HOM05D002182 ORTHO05D004671 6.3e-26 120.2 67 76.1
ECA248G2894 Erigeron canadensis HOM05D002182 ORTHO05D004671 1.4e-25 119.0 67 74.6
HanXRQChr01g0016921 Helianthus annuus HOM05D002182 ORTHO05D004671 1.4e-25 119.0 67 73.1
Thhalv10003618m.g Eutrema salsugineum HOM05D002182 ORTHO05D004671 1.8e-25 118.6 68 75.0
Sp2g26990 Schrenkiella parvula HOM05D002182 ORTHO05D004671 1.8e-25 118.6 68 75.0
Lsat_1_v5_gn_1_78841 Lactuca sativa HOM05D002182 ORTHO05D004671 2.4e-25 118.2 67 71.6
AUR62000512 Chenopodium quinoa HOM05D002182 ORTHO05D004671 2.0e-24 115.2 88 61.4
PSO443G0075 Papaver somniferum HOM05D002182 ORTHO05D004671 3.5e-24 114.4 68 72.1
PSO384G2582 Papaver somniferum HOM05D002182 ORTHO05D004671 1.0e-23 112.8 69 69.6
Aqoxy5G02289 Aquilegia oxysepala HOM05D002182 ORTHO05D004671 1.3e-23 112.5 65 72.3
BcaB08g34438 Brassica carinata HOM05D002182 ORTHO05D004671 8.5e-23 109.8 64 75.0
C01p17790 Brassica napus HOM05D002182 ORTHO05D004671 4.2e-22 107.5 64 73.4
BolC1t01713H Brassica oleracea HOM05D002182 ORTHO05D004671 4.2e-22 107.5 64 73.4
Mapoly0113s0011 Marchantia polymorpha HOM05D002182 ORTHO05D004671 7.2e-22 106.7 67 61.2
DCAR_023889 Daucus carota HOM05D002182 ORTHO05D004671 4.7e-21 104.0 51 86.3
Pp3c21_9710 Physcomitrium patens HOM05D002182 ORTHO05D004671 1.4e-20 102.4 66 62.1
SMO114G0082 Selaginella moellendorffii HOM05D002182 ORTHO05D004671 2.6e-19 98.2 66 59.1
AagrBONN_evm.TU.Sc2ySwM_228.5819 Anthoceros agrestis HOM05D002182 ORTHO05D004671 4.1e-17 90.9 67 53.7
CSS0041549 Camellia sinensis var. sinensis HOM05D002182 ORTHO05D004671 5.9e-16 87.0 59 69.5
C04p33650 Brassica napus HOM05D002182 ORTHO05D004671 5.5e-14 80.5 49 73.5
PRCOL_00003192 Prasinoderma coloniale HOM05D002182 ORTHO05D004671 1.5e-11 72.4 57 56.1
MCO11G433 Micromonas commoda HOM05D002182 ORTHO05D004671 2.6e-11 71.6 57 52.6
unitig_62.g23374 Utricularia gibba HOM05D002182 ORTHO05D004671 3.7e-10 67.8 36 80.6
Cfa022087 Carpinus fangiana HOM05D002182 ORTHO05D004671 6.3e-10 67.0 59 44.1
Haze_26976 Corylus avellana HOM05D002182 ORTHO05D004671 1.0e-07 59.7 53 47.2
CBR_g75 Chara braunii HOM05D000019 ORTHO05D000048 3.8e-07 57.8 41 56.1
CARHR125770 Cardamine hirsuta HOM05D002182 ORTHO05D008382 6.6e-07 57.0 48 47.9
Lj6g0009713 Lotus japonicus HOM05D002182 ORTHO05D008382 6.6e-07 57.0 34 61.8
MCO11G923 Micromonas commoda HOM05D002182 ORTHO05D008382 6.6e-07 57.0 39 59.0
Sp4g14400 Schrenkiella parvula HOM05D002182 ORTHO05D008382 8.6e-07 56.6 48 47.9
HPP92_011791 Vanilla planifolia HOM05D002182 ORTHO05D008382 8.6e-07 56.6 34 61.8
Atru.chr3.1773 Acer truncatum HOM05D002182 ORTHO05D008382 1.1e-06 56.2 33 66.7
AT2G32000 Arabidopsis thaliana HOM05D002182 ORTHO05D008382 1.1e-06 56.2 48 47.9
PGR142G0868 Punica granatum HOM05D002182 ORTHO05D008382 1.5e-06 55.8 34 61.8
Aqoxy2G03986 Aquilegia oxysepala HOM05D002182 ORTHO05D008382 1.9e-06 55.5 34 61.8
Cc03_g09640 Coffea canephora HOM05D002182 ORTHO05D008382 2.5e-06 55.1 34 61.8
Eucgr.L00646 Eucalyptus grandis HOM05D002182 ORTHO05D008382 2.5e-06 55.1 34 58.8
Os09g0500600 Oryza sativa ssp. japonica HOM05D002182 ORTHO05D008382 2.5e-06 55.1 48 45.8
TPR.G18108 Trifolium pratense HOM05D002182 ORTHO05D008382 2.5e-06 55.1 34 58.8
arahy.Tifrunner.gnm1.ann1.93YPU9 Arachis hypogaea HOM05D002182 ORTHO05D008382 3.3e-06 54.7 34 58.8
arahy.Tifrunner.gnm1.ann1.RWIY1E Arachis hypogaea HOM05D002182 ORTHO05D008382 3.3e-06 54.7 34 58.8
Ca_16436_v3 Cicer arietinum L. HOM05D002182 ORTHO05D008382 3.3e-06 54.7 34 58.8
DCAR_024119 Daucus carota HOM05D002182 ORTHO05D008382 3.3e-06 54.7 34 58.8
Glyma.11G253100 Glycine max HOM05D002182 ORTHO05D008382 3.3e-06 54.7 34 58.8
VMungo1383G0373 Vigna mungo HOM05D002182 ORTHO05D008382 3.3e-06 54.7 34 58.8
BcaB01g03999 Brassica carinata HOM05D002182 ORTHO05D008382 4.2e-06 54.3 33 60.6
BcaC01g05921 Brassica carinata HOM05D002182 ORTHO05D008382 4.2e-06 54.3 33 60.6
A03p18020 Brassica napus HOM05D002182 ORTHO05D008382 4.2e-06 54.3 33 60.6
C03p21060 Brassica napus HOM05D002182 ORTHO05D008382 4.2e-06 54.3 33 60.6
BraA03t11062Z Brassica rapa HOM05D002182 ORTHO05D008382 4.2e-06 54.3 33 60.6
CSS0003059 Camellia sinensis var. sinensis HOM05D002182 ORTHO05D008382 4.2e-06 54.3 34 58.8
Thhalv10016222m.g Eutrema salsugineum HOM05D002182 ORTHO05D008382 4.2e-06 54.3 33 60.6
FvH4_4g12750 Fragaria vesca HOM05D002182 ORTHO05D008382 4.2e-06 54.3 33 60.6
FAN12G0184 Fragaria x ananassa HOM05D002182 ORTHO05D008382 4.2e-06 54.3 33 60.6
FAN17G1163 Fragaria x ananassa HOM05D002182 ORTHO05D008382 4.2e-06 54.3 33 60.6
Gohir.A10G131800 Gossypium hirsutum HOM05D002182 ORTHO05D008382 4.2e-06 54.3 34 58.8
Rhsim09G0063400 Rhododendron simsii HOM05D002182 ORTHO05D008382 4.2e-06 54.3 34 58.8
RcHm_v2.0_Chr4g0412031 Rosa chinensis HOM05D002182 ORTHO05D008382 4.2e-06 54.3 33 60.6
TAR365G1258 Trochodendron aralioides HOM05D002182 ORTHO05D008382 4.2e-06 54.3 34 58.8
GSVIVG01031636001 Vitis vinifera HOM05D002182 ORTHO05D008382 4.2e-06 54.3 34 58.8
ATR0686G228 Amborella trichopoda HOM05D002182 ORTHO05D008382 5.5e-06 53.9 34 58.8
Dinv32179 Davidia involucrata HOM05D002182 ORTHO05D008382 5.5e-06 53.9 34 58.8
ECA238G0923 Erigeron canadensis HOM05D002182 ORTHO05D008382 5.5e-06 53.9 33 60.6
FAN22G0833 Fragaria x ananassa HOM05D002182 ORTHO05D008382 5.5e-06 53.9 33 60.6
Lsat_1_v5_gn_2_49140 Lactuca sativa HOM05D002182 ORTHO05D008382 5.5e-06 53.9 33 60.6
MD04G1023600 Malus domestica HOM05D002182 ORTHO05D008382 5.5e-06 53.9 33 60.6
Medtr3g084800 Medicago truncatula HOM05D002182 ORTHO05D008382 5.5e-06 53.9 33 60.6
Nn1g08084 Nelumbo nucifera HOM05D002182 ORTHO05D008382 5.5e-06 53.9 34 58.8
Psat5g097840 Pisum sativum HOM05D002182 ORTHO05D008382 5.5e-06 53.9 33 60.6
Prupe.1G173400 Prunus persica HOM05D002182 ORTHO05D008382 5.5e-06 53.9 33 60.6
THA.LOC104800954 Tarenaya hassleriana HOM05D002182 ORTHO05D008382 5.5e-06 53.9 33 60.6
Actinidia35818 Actinidia chinensis HOM05D002182 ORTHO05D008382 7.2e-06 53.5 33 60.6
CANSAT78G1786 Cannabis sativa HOM05D002182 ORTHO05D008382 7.2e-06 53.5 33 60.6
Cpa.g.sc157.4 Carica papaya HOM05D002182 ORTHO05D008382 7.2e-06 53.5 33 60.6
Duzib212G0342 Durio zibethinus HOM05D002182 ORTHO05D008382 7.2e-06 53.5 33 60.6
Gohir.D10G135200 Gossypium hirsutum HOM05D002182 ORTHO05D008382 7.2e-06 53.5 33 60.6
Gorai.011G150100 Gossypium raimondii HOM05D002182 ORTHO05D008382 7.2e-06 53.5 33 60.6
HanXRQChr14g0436751 Helianthus annuus HOM05D002182 ORTHO05D008382 7.2e-06 53.5 33 60.6
Lalb_Chr23g0278251 Lupinus albus HOM05D002182 ORTHO05D008382 7.2e-06 53.5 34 55.9
PSO063G4176 Papaver somniferum HOM05D002182 ORTHO05D008382 7.2e-06 53.5 34 58.8
Thecc.04G190100 Theobroma cacao HOM05D002182 ORTHO05D008382 7.2e-06 53.5 33 60.6
Aa31LG5G5010 Aethionema arabicum HOM05D002182 ORTHO05D008382 9.5e-06 53.1 33 60.6
AL4G27360 Arabidopsis lyrata HOM05D002182 ORTHO05D008382 9.5e-06 53.1 33 60.6
Carub.0004s1334 Capsella rubella HOM05D002182 ORTHO05D008382 9.5e-06 53.1 33 60.6
CiPaw.01G112100 Carya illinoinensis HOM05D002182 ORTHO05D008382 9.5e-06 53.1 33 60.6
Potri.014G148800 Populus trichocarpa HOM05D002182 ORTHO05D008382 9.5e-06 53.1 33 60.6
Sabra14G0091800 Salix brachista HOM05D002182 ORTHO05D004671 9.5e-06 53.1 42 61.9
Sabra14G0112200 Salix brachista HOM05D002182 ORTHO05D008382 9.5e-06 53.1 33 60.6
Zm00001eb317420 Zea mays HOM05D002182 ORTHO05D008382 9.5e-06 53.1 48 43.8


User provided reference genes

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