Gene: Lsat_1_v5_gn_2_49140
General Information
Structural Information
- Species Lactuca sativa
- Gene Identifier Lsat_1_v5_gn_2_49140
- Transcript Identifier Lsat_1_v5_gn_2_49140.1
- Gene Type Coding gene
- Location Lsat_1_v8_lg_2 : 108125541-108137641 : positive
Gene Family Information
- ID HOM05D002182
- #Genes/#Species 307/100
- Phylogenetic origin
- ID ORTHO05D008382
- #Genes/#Species 120/95
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- id Lsat_1_v5_gn_2_49140.v5
- pacid 38960987
Descriptions
- Description K03165 - DNA topoisomerase III (TOP3)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006265 | IEA | InterPro | DNA topological change |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0003916 | IEA | InterPro | DNA topoisomerase activity | |
| GO:0003917 | IEA | InterPro | DNA topoisomerase type I (single strand cut, ATP-independent) activity | |
| GO:0003729 | ISO | PLAZA Integrative Orthology | mRNA binding | AT2G32000 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR006171 | TOPRIM domain |
| IPR023405 | DNA topoisomerase, type IA, core domain |
| IPR013497 | DNA topoisomerase, type IA, central |
| IPR034144 | DNA topoisomerase 3-like, TOPRIM domain |
| IPR013825 | DNA topoisomerase, type IA, central region, subdomain 2 |
| IPR013824 | DNA topoisomerase, type IA, central region, subdomain 1 |
| IPR003601 | DNA topoisomerase, type IA, domain 2 |
| IPR000380 | DNA topoisomerase, type IA |
| IPR003602 | DNA topoisomerase, type IA, DNA-binding domain |
| IPR013826 | DNA topoisomerase, type IA, central region, subdomain 3 |
| Mapman id | Description |
|---|---|
| 12.3.4.3.2 | Chromatin organisation.post-translational histone modification.histone arginine methylation.TDRD3-TOP3B methyl-arginine reader complex.topoisomerase component TOP3b |
| 15.3.6.2.3 | RNA biosynthesis.RNA polymerase II-dependent transcription.transcription termination.R-loop removal.type-1A topoisomerase (TOP3b) |