Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0226931 Rosa chinensis HOM05D005290 ORTHO05D006040 0.0e+00 1218.4 626 100.0
RcHm_v2.0_Chr3g0494621 Rosa chinensis HOM05D005290 ORTHO05D006040 0.0e+00 1173.7 626 95.4
FAN04G2711 Fragaria x ananassa HOM05D005290 ORTHO05D006040 0.0e+00 1132.5 626 92.0
FvH4_5g31560 Fragaria vesca HOM05D005290 ORTHO05D006040 0.0e+00 1130.5 626 92.0
FAN18G4563 Fragaria x ananassa HOM05D005290 ORTHO05D006040 0.0e+00 1103.2 611 92.0
Prupe.1G555900 Prunus persica HOM05D005290 ORTHO05D006040 0.0e+00 1078.5 626 87.4
MD12G1033300 Malus domestica HOM05D005290 ORTHO05D006040 4.9e-298 1027.3 626 84.5
CSS0033470 Camellia sinensis var. sinensis HOM05D005290 ORTHO05D006040 5.0e-287 990.7 626 79.1
Thecc.08G192800 Theobroma cacao HOM05D005290 ORTHO05D006040 8.0e-285 983.4 628 79.3
CiPaw.07G235300 Carya illinoinensis HOM05D005290 ORTHO05D006040 6.8e-284 980.3 627 79.7
CSS0003964 Camellia sinensis var. sinensis HOM05D005290 ORTHO05D006040 2.2e-282 975.3 626 78.1
CANSAT80G2649 Cannabis sativa HOM05D005290 ORTHO05D006040 4.9e-282 974.2 626 78.3
Atru.chr13.2376 Acer truncatum HOM05D005290 ORTHO05D006040 7.0e-281 970.3 627 78.3
Gohir.A13G118900 Gossypium hirsutum HOM05D005290 ORTHO05D006040 3.0e-279 964.9 627 78.6
vmacro00977 Vaccinium macrocarpon HOM05D005290 ORTHO05D006040 3.0e-279 964.9 627 77.5
TAR381G0263 Trochodendron aralioides HOM05D005290 ORTHO05D006040 1.1e-278 963.0 626 76.5
Gorai.013G137700 Gossypium raimondii HOM05D005290 ORTHO05D006040 7.3e-278 960.3 628 78.0
Eucgr.F02988 Eucalyptus grandis HOM05D005290 ORTHO05D006040 1.4e-276 956.1 632 76.3
Gohir.D13G122700 Gossypium hirsutum HOM05D005290 ORTHO05D006040 5.8e-275 950.7 650 75.5
Potri.019G078700 Populus trichocarpa HOM05D005290 ORTHO05D006040 1.3e-274 949.5 629 77.4
Hma1.2p1_0004F.1_g003900 Hydrangea macrophylla HOM05D005290 ORTHO05D006040 2.7e-272 941.8 628 76.1
COL.COLO4_24646 Corchorus olitorius HOM05D005290 ORTHO05D006040 6.0e-272 940.6 615 77.2
Rhsim12G0006000 Rhododendron simsii HOM05D005290 ORTHO05D006040 2.3e-271 938.7 706 68.8
Migut.C01329 Erythranthe guttata HOM05D005290 ORTHO05D006040 3.0e-271 938.3 626 75.4
Manes.02G198901 Manihot esculenta HOM05D005290 ORTHO05D006040 1.9e-270 935.6 628 76.3
Sc01g0002020 Simmondsia chinensis HOM05D005290 ORTHO05D006040 4.3e-270 934.5 630 75.1
Ciclev10019018m.g Citrus clementina HOM05D005290 ORTHO05D006040 6.2e-269 930.6 628 75.5
MBI03_g18676_MAGBIO Magnolia biondii HOM05D005290 ORTHO05D006040 2.3e-268 928.7 626 74.3
Lj3g0002821 Lotus japonicus HOM05D005290 ORTHO05D006040 3.4e-267 924.9 626 73.3
SGA_v2.0_scaffold118G32566 Striga asiatica HOM05D005290 ORTHO05D006040 3.4e-267 924.9 626 74.9
TPR.G25526 Trifolium pratense HOM05D005290 ORTHO05D006040 7.6e-267 923.7 626 73.2
AUR62004596 Chenopodium quinoa HOM05D005290 ORTHO05D006040 1.3e-266 922.9 627 74.5
MSTRG.25478 Avicennia marina HOM05D005290 ORTHO05D006040 1.7e-266 922.5 626 73.6
Cc10_g09470 Coffea canephora HOM05D005290 ORTHO05D006040 8.4e-266 920.2 626 74.3
Glyma.04G254900 Glycine max HOM05D005290 ORTHO05D006040 8.4e-266 920.2 626 73.2
Sabra19G0089500 Salix brachista HOM05D005290 ORTHO05D006040 8.4e-266 920.2 686 71.0
Hund27128 Selenicereus undatus HOM05D005290 ORTHO05D006040 9.2e-265 916.8 631 74.3
Hund27133 Selenicereus undatus HOM05D005290 ORTHO05D006040 9.2e-265 916.8 631 74.3
Sopen04g017660 Solanum pennellii HOM05D005290 ORTHO05D006040 7.8e-264 913.7 626 73.6
CAN.G982.5 Capsicum annuum HOM05D005290 ORTHO05D006040 2.3e-263 912.1 628 73.4
AL6G42870 Arabidopsis lyrata HOM05D005290 ORTHO05D006040 3.0e-263 911.8 626 73.0
Lalb_Chr07g0189291 Lupinus albus HOM05D005290 ORTHO05D006040 8.6e-263 910.2 626 71.9
Phvul.005G002000 Phaseolus vulgaris HOM05D005290 ORTHO05D006040 2.5e-262 908.7 631 73.4
CsaV3_6G002720 Cucumis sativus L. HOM05D005290 ORTHO05D006040 5.6e-262 907.5 626 72.7
Solyc04g045660.4 Solanum lycopersicum HOM05D005290 ORTHO05D006040 9.6e-262 906.7 627 73.0
VMungo1080G0256 Vigna mungo HOM05D005290 ORTHO05D006040 1.6e-261 906.0 627 72.9
Aqoxy6G00108 Aquilegia oxysepala HOM05D005290 ORTHO05D006040 2.8e-261 905.2 632 72.9
Sed0025467 Sechium edule HOM05D005290 ORTHO05D006040 2.8e-261 905.2 626 72.7
Medtr3g005810 Medicago truncatula HOM05D005290 ORTHO05D006040 3.6e-261 904.8 626 71.7
Aa31LG9G14750 Aethionema arabicum HOM05D005290 ORTHO05D006040 6.2e-261 904.0 626 72.8
Nitab4.5_0008566g0030 Nicotiana tabacum HOM05D005290 ORTHO05D006040 2.4e-260 902.1 630 73.3
SalBow7G4073 Salvia bowleyana HOM05D005290 ORTHO05D006040 2.0e-259 899.0 626 71.7
Carub.0006s2769 Capsella rubella HOM05D005290 ORTHO05D006040 3.4e-259 898.3 626 71.7
Sp6g08400 Schrenkiella parvula HOM05D005290 ORTHO05D006040 3.4e-259 898.3 626 72.4
Thhalv10028465m.g Eutrema salsugineum HOM05D005290 ORTHO05D006040 1.3e-258 896.3 626 71.6
Dinv41762 Davidia involucrata HOM05D005290 ORTHO05D006040 3.8e-258 894.8 588 77.2
MELO3C025009.2 Cucumis melo HOM05D005290 ORTHO05D006040 4.9e-258 894.4 626 72.0
A03p28460 Brassica napus HOM05D005290 ORTHO05D006040 2.4e-257 892.1 627 71.5
BraA03t12051Z Brassica rapa HOM05D005290 ORTHO05D006040 2.4e-257 892.1 627 71.5
EL10Ac1g00141 Beta vulgaris HOM05D005290 ORTHO05D006040 4.2e-257 891.3 631 72.9
C03p34390 Brassica napus HOM05D005290 ORTHO05D006040 5.4e-257 891.0 627 71.8
BolC3t15749H Brassica oleracea HOM05D005290 ORTHO05D006040 5.4e-257 891.0 627 71.8
BcaB01g02803 Brassica carinata HOM05D005290 ORTHO05D006040 2.7e-256 888.6 626 70.9
BcaC01g04730 Brassica carinata HOM05D005290 ORTHO05D006040 6.6e-255 884.0 626 70.6
arahy.Tifrunner.gnm1.ann1.0B02IH Arachis hypogaea HOM05D005290 ORTHO05D006040 1.1e-254 883.2 649 68.7
Nitab4.5_0006434g0010 Nicotiana tabacum HOM05D005290 ORTHO05D006040 4.3e-254 881.3 630 72.4
arahy.Tifrunner.gnm1.ann1.QF83TB Arachis hypogaea HOM05D005290 ORTHO05D006040 5.6e-254 880.9 641 69.3
Ca_13983_v3 Cicer arietinum L. HOM05D005290 ORTHO05D006040 1.3e-253 879.8 616 72.4
CARHR260140 Cardamine hirsuta HOM05D005290 ORTHO05D006040 3.6e-253 878.2 623 71.3
Lsat_1_v5_gn_1_31200 Lactuca sativa HOM05D005290 ORTHO05D006040 1.1e-252 876.7 627 70.8
HanXRQChr09g0266431 Helianthus annuus HOM05D005290 ORTHO05D006040 2.0e-251 872.5 627 70.8
PSO170G3966 Papaver somniferum HOM05D005290 ORTHO05D006040 6.4e-250 867.5 626 69.5
PSO782G1799 Papaver somniferum HOM05D005290 ORTHO05D006040 8.7e-247 857.1 627 69.1
ECA232G1421 Erigeron canadensis HOM05D005290 ORTHO05D006040 3.1e-244 848.6 622 69.6
TWI59G0173 Tripterygium wilfordii HOM05D005290 ORTHO05D006040 6.4e-242 840.9 640 70.0
Psat1g008120 Pisum sativum HOM05D005290 ORTHO05D006040 2.5e-238 828.9 626 67.6
PGR042G0738 Punica granatum HOM05D005290 ORTHO05D006040 7.4e-238 827.4 644 68.5
ATR1136G152 Amborella trichopoda HOM05D005290 ORTHO05D006040 8.1e-237 823.9 635 65.4
Ah.05g178620 Amaranthus hybridus HOM05D005290 ORTHO05D006040 1.5e-235 819.7 626 68.4
Os01g0958900 Oryza sativa ssp. japonica HOM05D005290 ORTHO05D006040 1.9e-233 812.8 628 64.5
Zm00001eb362590 Zea mays HOM05D005290 ORTHO05D006040 4.2e-233 811.6 629 64.2
SHI12388 Sapria himalayana HOM05D005290 ORTHO05D006040 4.6e-232 808.1 628 64.8
Cfa012974 Carpinus fangiana HOM05D005290 ORTHO05D006040 4.3e-230 801.6 500 81.8
AUR62023548 Chenopodium quinoa HOM05D005290 ORTHO05D006040 4.8e-229 798.1 615 67.0
AT4G09140 Arabidopsis thaliana HOM05D005290 ORTHO05D006040 7.2e-225 784.3 564 70.6
Peaxi162Scf00076g10023 Petunia axillaris HOM05D005290 ORTHO05D006040 1.0e-215 753.8 626 64.5
unitig_26.g9865 Utricularia gibba HOM05D005290 ORTHO05D006040 4.8e-213 745.0 626 62.8
Lalb_Chr18g0049141 Lupinus albus HOM05D005290 ORTHO05D006040 3.4e-211 738.8 626 60.2
ClCG08G002460 Citrullus lanatus HOM05D005290 ORTHO05D006040 8.5e-210 734.2 500 75.0
SEGI_07557 Sequoiadendron giganteum HOM05D005290 ORTHO05D006040 3.6e-208 728.8 618 58.4
Mapoly0086s0067 Marchantia polymorpha HOM05D005290 ORTHO05D006040 1.5e-201 706.8 631 56.6
Pp3c10_9000 Physcomitrium patens HOM05D005290 ORTHO05D006040 7.7e-195 684.5 635 56.2
AagrBONN_evm.TU.Sc2ySwM_344.4012 Anthoceros agrestis HOM05D005290 ORTHO05D006040 1.1e-193 680.6 633 55.1
Nn1g08422 Nelumbo nucifera HOM05D005290 ORTHO05D006040 2.5e-177 626.3 448 70.8
CDE02G0285 Ceratophyllum demersum HOM05D005290 ORTHO05D006040 1.7e-173 613.6 528 62.1
HPP92_004622 Vanilla planifolia HOM05D005290 ORTHO05D006040 1.9e-164 583.6 445 66.5
SMO340G0005 Selaginella moellendorffii HOM05D005290 ORTHO05D006040 7.0e-164 581.6 615 49.9
Lj7C285G2 Lonicera japonica HOM05D005290 ORTHO05D006040 2.0e-163 580.1 493 64.5
Duzib177G0512 Durio zibethinus HOM05D005290 ORTHO05D006040 1.9e-153 547.0 350 76.9
CBR_g11107 Chara braunii HOM05D005290 ORTHO05D006040 4.7e-152 542.3 648 45.4
Cpa.g.sc50.56 Carica papaya HOM05D005290 ORTHO05D006040 3.0e-146 523.1 366 72.1
Sed0027029 Sechium edule HOM05D005290 ORTHO05D006040 6.9e-143 511.9 455 60.2
Oeu059199.1 Olea europaea HOM05D005290 ORTHO05D006040 5.1e-130 469.2 321 71.3
GSVIVG01026715001 Vitis vinifera HOM05D005290 ORTHO05D006040 1.8e-114 417.5 253 83.0
PRCOL_00005034 Prasinoderma coloniale HOM05D005290 ORTHO05D006040 1.9e-113 414.1 668 37.0
Cpa.g.sc50.54 Carica papaya HOM05D005290 ORTHO05D006040 5.3e-111 406.0 253 80.6
DCAR_017435 Daucus carota HOM05D005290 ORTHO05D006040 1.6e-107 394.4 324 66.0
Nn1g08386 Nelumbo nucifera HOM05D005290 ORTHO05D006040 3.3e-97 360.1 221 80.5
MCO16G484 Micromonas commoda HOM05D005290 ORTHO05D006040 4.1e-95 353.2 636 34.6
Sed0005919 Sechium edule HOM05D005290 ORTHO05D006040 3.9e-90 336.7 233 70.4
CSS0016165 Camellia sinensis var. sinensis HOM05D005290 ORTHO05D006040 2.3e-82 310.8 330 53.9
Cre01.g036050 Chlamydomonas reinhardtii HOM05D005290 ORTHO05D006040 8.5e-77 292.4 884 27.7
Cfa009487 Carpinus fangiana HOM05D005290 ORTHO05D006040 4.2e-76 290.0 665 30.8
Haze_21326 Corylus avellana HOM05D005290 ORTHO05D006040 3.6e-75 287.0 171 77.8
Rhsim03G0213900 Rhododendron simsii HOM05D005290 ORTHO05D006040 7.0e-71 272.7 185 77.3
DCAR_017434 Daucus carota HOM05D005290 ORTHO05D006040 3.8e-69 266.9 181 64.6
HPP92_004621 Vanilla planifolia HOM05D005290 ORTHO05D006040 4.0e-66 256.9 185 64.3
Dinv16440 Davidia involucrata HOM05D005290 ORTHO05D006040 5.9e-62 243.0 198 66.7
Lsat_1_v5_gn_1_32860 Lactuca sativa HOM05D005290 ORTHO05D006040 1.5e-60 238.4 215 57.7
ATR1136G132 Amborella trichopoda HOM05D005290 ORTHO05D006040 4.3e-60 236.9 170 67.1
CDE02G3660 Ceratophyllum demersum HOM05D005290 ORTHO05D006040 3.0e-58 230.7 237 56.1
PGSC0003DMG402015043 Solanum tuberosum HOM05D005290 ORTHO05D006040 1.6e-51 208.4 128 76.6
Lsat_1_v5_gn_8_103720 Lactuca sativa HOM05D005290 ORTHO05D006040 4.4e-49 200.3 348 39.7
ClCG08G002450 Citrullus lanatus HOM05D005290 ORTHO05D006040 1.4e-47 195.3 145 64.1
Lj7A285T59 Lonicera japonica HOM05D005290 ORTHO05D006040 3.3e-44 184.1 101 86.1
RhsimUnG0011300 Rhododendron simsii HOM05D005290 ORTHO05D006040 1.1e-42 179.1 115 78.3
Dinv08418 Davidia involucrata HOM05D005290 ORTHO05D006040 2.9e-40 171.0 100 83.0
Lsat_1_v5_gn_4_131700 Lactuca sativa HOM05D005290 ORTHO05D006040 1.4e-39 168.7 111 74.8
Lsat_1_v5_gn_5_63620 Lactuca sativa HOM05D005422 ORTHO05D006040 8.9e-34 149.4 130 64.6
Lsat_1_v5_gn_2_95100 Lactuca sativa HOM05D005290 ORTHO05D006040 2.6e-33 147.9 130 64.6
MD14G1034100 Malus domestica HOM05D005290 ORTHO05D006040 3.4e-33 147.5 236 42.8
Oeu006599.1 Olea europaea HOM05D005290 ORTHO05D006040 1.6e-30 138.7 100 65.0
Lsat_1_v5_gn_2_95080 Lactuca sativa HOM05D005290 ORTHO05D006040 2.4e-26 124.8 88 71.6
Lsat_1_v5_gn_2_103881 Lactuca sativa HOM05D005290 ORTHO05D006040 1.2e-25 122.5 95 66.3
PGSC0003DMG401015043 Solanum tuberosum HOM05D005290 ORTHO05D006040 6.0e-22 110.2 65 80.0
MBI18_g19490_MAGBIO Magnolia biondii HOM05D004276 ORTHO05D005126 3.8e-16 90.9 69 68.1
HanXRQChr07g0194581 Helianthus annuus HOM05D005290 ORTHO05D006040 3.5e-14 84.3 73 64.4
Pp3c8_22650 Physcomitrium patens HOM05D002199 ORTHO05D007829 5.6e-12 77.0 282 27.0
Glyma.19G059900 Glycine max HOM05D005290 ORTHO05D006040 2.8e-11 74.7 56 66.1
Peaxi162Scf00001ggene001 Petunia axillaris HOM05D002199 ORTHO05D007829 3.7e-11 74.3 271 25.5
Sopen09g029810 Solanum pennellii HOM05D002199 ORTHO05D007829 3.7e-11 74.3 244 25.4
Lalb_Chr06g0163421 Lupinus albus HOM05D002199 ORTHO05D007829 8.1e-11 73.2 244 28.7
Ciclev10018899m.g Citrus clementina HOM05D002199 ORTHO05D007829 1.8e-10 72.0 270 25.6
AagrBONN_evm.TU.Sc2ySwM_117.2165 Anthoceros agrestis HOM05D002199 ORTHO05D007829 2.4e-10 71.6 275 23.6
Oeu042240.1 Olea europaea HOM05D005290 ORTHO05D006040 4.0e-10 70.9 56 62.5
QL12p027267 Quercus lobata HOM05D002199 ORTHO05D007829 4.0e-10 70.9 240 25.4
Cfa027213 Carpinus fangiana HOM05D002199 ORTHO05D007829 5.3e-10 70.5 268 24.6
PRCOL_00003998 Prasinoderma coloniale HOM05D002199 ORTHO05D007829 1.2e-09 69.3 261 26.1
CBR_g46895 Chara braunii HOM05D002199 ORTHO05D007829 1.5e-09 68.9 253 26.1
Nitab4.5_0002469g0020 Nicotiana tabacum HOM05D002199 ORTHO05D007829 4.5e-09 67.4 294 24.1
CAN.G339.22 Capsicum annuum HOM05D002199 ORTHO05D007829 5.8e-09 67.0 339 24.5
Sopen02g027400 Solanum pennellii HOM05D004017 ORTHO05D004612 5.8e-09 67.0 259 24.7
Solyc02g082660.3 Solanum lycopersicum HOM05D004017 ORTHO05D004612 7.6e-09 66.6 259 24.7
Mapoly0103s0058 Marchantia polymorpha HOM05D002199 ORTHO05D007829 1.7e-08 65.5 324 22.8
Nitab4.5_0001756g0160 Nicotiana tabacum HOM05D002199 ORTHO05D007829 1.7e-08 65.5 295 24.7
FAN23G1226 Fragaria x ananassa HOM05D004017 ORTHO05D004612 8.4e-08 63.2 286 24.1
AUR62033110 Chenopodium quinoa HOM05D002199 ORTHO05D007829 1.1e-07 62.8 311 24.1
Actinidia24740 Actinidia chinensis HOM05D005290 ORTHO05D006040 1.9e-07 62.0 50 66.0
Dinv41761 Davidia involucrata HOM05D005290 ORTHO05D006040 2.4e-07 61.6 32 90.6
AUR62008658 Chenopodium quinoa HOM05D002199 ORTHO05D007829 3.2e-07 61.2 373 22.0
Cc07_g11910 Coffea canephora HOM05D004017 ORTHO05D004612 3.2e-07 61.2 161 27.3
MD14G1034200 Malus domestica HOM05D005290 ORTHO05D006040 3.2e-07 61.2 40 77.5
PSO541G0703 Papaver somniferum HOM05D004017 ORTHO05D004612 3.2e-07 61.2 242 23.6
CAN.G1238.14 Capsicum annuum HOM05D004017 ORTHO05D004612 4.2e-07 60.8 260 23.8
AUR62044353 Chenopodium quinoa HOM05D002199 ORTHO05D007829 4.2e-07 60.8 464 21.6
THA.LOC104819715 Tarenaya hassleriana HOM05D004017 ORTHO05D004612 7.1e-07 60.1 280 23.9
Zm00001eb258080 Zea mays HOM05D000837 ORTHO05D444011 7.1e-07 60.1 62 54.8
ATR0807G072 Amborella trichopoda HOM05D004017 ORTHO05D004612 9.3e-07 59.7 191 25.7
Thecc.01G005000 Theobroma cacao HOM05D004017 ORTHO05D004612 9.3e-07 59.7 268 24.3
SMO116G0380 Selaginella moellendorffii HOM05D002199 ORTHO05D007829 1.2e-06 59.3 237 24.5
MD02G1114700 Malus domestica HOM05D004017 ORTHO05D004612 2.1e-06 58.5 184 27.7
Duzib147G1448 Durio zibethinus HOM05D004017 ORTHO05D004612 2.7e-06 58.2 276 23.9
Lj2g0020546 Lotus japonicus HOM05D004017 ORTHO05D004612 3.5e-06 57.8 181 25.4
Manes.02G114300 Manihot esculenta HOM05D004017 ORTHO05D004612 3.5e-06 57.8 190 27.9
Mapoly0006s0222 Marchantia polymorpha HOM05D004017 ORTHO05D004612 3.5e-06 57.8 194 25.8
Rhsim10G0195200 Rhododendron simsii HOM05D004017 ORTHO05D004612 3.5e-06 57.8 186 25.8
Nitab4.5_0004608g0010 Nicotiana tabacum HOM05D004017 ORTHO05D004612 4.6e-06 57.4 257 23.7
Prupe.7G183500 Prunus persica HOM05D004017 ORTHO05D004612 6.0e-06 57.0 181 24.3
MCO14G224 Micromonas commoda HOM05D002199 ORTHO05D007829 7.9e-06 56.6 339 22.1


User provided reference genes

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