Gene: Sopen09g029810

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen09g029810
  • Transcript Identifier Sopen09g029810.1
  • Gene Type Coding gene
  • Location Spenn-ch09 : 78182397-78191111 : positive

Gene Family Information

  • ID HOM05D002199
  • #Genes/#Species 305/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen09g029810.1

Descriptions

  • Description Encodes a protein similar to PMS1 in yeast, a member of the family of eukaryotic MutL homologs. The protein appears to play a role in DNA mismatch repair and in the suppression of somatic homeologous recombination. | POSTMEIOTIC SEGREGATION 1 (PMS1) | FUNCTIONS IN: mismatched DNA binding, ATP binding | INVOLVED IN: mismatch repair, fruit development, seed development, DNA recombination, pollen development | LOCATED IN: nucleus | EXPRESSED IN: 17 plant structures | EXPRESSED DURING: 9 growth stages | CONTAINS InterPro DOMAIN/s: DNA mismatch repair, conserved site , ATPase-like, ATP-binding domain , DNA mismatch repair protein, C-terminal , MutL, C-terminal, dimerisation , DNA mismatch repair protein, N-terminal , Ribosomal protein S5 domain 2-type fold , DNA mismatch repair protein , Post Meiotic Segregation 2 , Ribosomal protein S5 domain 2-type fold, subgroup | BEST Arabidopsis thaliana protein match is: MUTL-homologue 1
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006298
IEA
InterPromismatch repair
GO:0010154
ISO
PLAZA Integrative Orthologyfruit development AT4G02460
GO:0000956
ISO
PLAZA Homology (enrichment)nuclear-transcribed mRNA catabolic process HOM05D002199
GO:0006310
ISO
PLAZA Integrative OrthologyDNA recombination AT4G02460
GO:0009555
ISO
PLAZA Integrative Orthologypollen development AT4G02460
GO:0048316
ISO
PLAZA Integrative Orthologyseed development AT4G02460
GO:0006396
ISO
PLAZA Homology (enrichment)RNA processing HOM05D002199
GO:0000398
ISO
PLAZA Homology (enrichment)mRNA splicing, via spliceosome HOM05D002199

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005524
IEA
InterProATP binding
GO:0030983
IEA
InterPromismatched DNA binding
GO:0016887
IEA
InterProATP hydrolysis activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0032300
IEA
InterPromismatch repair complex
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT4G02460

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
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InterPro Description
IPR013507 DNA mismatch repair protein, S5 domain 2-like
IPR042120 MutL, C-terminal domain, dimerisation subdomain
IPR002099 DNA mismatch repair protein family, N-terminal
IPR014790 MutL, C-terminal, dimerisation
IPR042121 MutL, C-terminal domain, regulatory subdomain
IPR037198 MutL, C-terminal domain superfamily
IPR036890 Histidine kinase/HSP90-like ATPase superfamily
IPR038973 DNA mismatch repair protein MutL/Mlh/Pms
IPR020568 Ribosomal protein S5 domain 2-type fold
IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup
Mapman id Description
14.7.2.2 DNA damage response.mismatch repair (MMR).MLH1-PMS1 heterodimer.component PMS1