Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0213981 Rosa chinensis HOM05D000246 ORTHO05D007958 4.9e-24 113.6 57 100.0
FvH4_5g24180 Fragaria vesca HOM05D000246 ORTHO05D007958 5.9e-17 90.1 48 91.7
FAN13G2839 Fragaria x ananassa HOM05D000246 ORTHO05D007958 5.9e-17 90.1 48 91.7
FAN18G0721 Fragaria x ananassa HOM05D000246 ORTHO05D007958 5.9e-17 90.1 48 91.7
Prupe.5G018600 Prunus persica HOM05D000246 ORTHO05D007958 1.7e-16 88.6 48 91.7
FAN08G0258 Fragaria x ananassa HOM05D000246 ORTHO05D007958 2.2e-16 88.2 48 89.6
RcHm_v2.0_Chr7g0213961 Rosa chinensis HOM05D000246 ORTHO05D007958 2.9e-16 87.8 48 91.7
arahy.Tifrunner.gnm1.ann1.4RSR2I Arachis hypogaea HOM05D000246 ORTHO05D007958 3.2e-15 84.3 48 85.4
arahy.Tifrunner.gnm1.ann1.QS0FC1 Arachis hypogaea HOM05D000246 ORTHO05D007958 3.2e-15 84.3 48 85.4
MD00G1078900 Malus domestica HOM05D000246 ORTHO05D007958 4.2e-15 84.0 48 85.4
Ca_25083_v3 Cicer arietinum L. HOM05D000246 ORTHO05D007958 5.5e-15 83.6 48 85.4
Haze_07998 Corylus avellana HOM05D000246 ORTHO05D007958 1.2e-14 82.4 48 81.2
TPR.G27203 Trifolium pratense HOM05D000246 ORTHO05D007958 1.2e-14 82.4 48 83.3
GSVIVG01036944001 Vitis vinifera HOM05D000246 ORTHO05D007958 1.2e-14 82.4 48 83.3
Lj2g0022743 Lotus japonicus HOM05D000246 ORTHO05D007958 1.6e-14 82.0 48 83.3
Lsat_1_v5_gn_5_59341 Lactuca sativa HOM05D000246 ORTHO05D007958 2.7e-14 81.3 48 83.3
Psat2g143000 Pisum sativum HOM05D000246 ORTHO05D007958 2.7e-14 81.3 48 83.3
Aqoxy3G01991 Aquilegia oxysepala HOM05D000246 ORTHO05D007958 3.6e-14 80.9 48 81.2
CANSAT35G0103 Cannabis sativa HOM05D000246 ORTHO05D007958 3.6e-14 80.9 48 83.3
AUR62007433 Chenopodium quinoa HOM05D000246 ORTHO05D007958 3.6e-14 80.9 48 81.2
Eucgr.E01207 Eucalyptus grandis HOM05D000246 ORTHO05D007958 3.6e-14 80.9 48 81.2
Nn1g09149 Nelumbo nucifera HOM05D000246 ORTHO05D007958 3.6e-14 80.9 48 79.2
EL10Ac5g11897 Beta vulgaris HOM05D000246 ORTHO05D007958 4.6e-14 80.5 48 83.3
Dinv09439 Davidia involucrata HOM05D000246 ORTHO05D007958 4.6e-14 80.5 48 83.3
Lj8C409G0 Lonicera japonica HOM05D000246 ORTHO05D007958 4.6e-14 80.5 48 81.2
Rhsim07G0157300 Rhododendron simsii HOM05D000246 ORTHO05D007958 4.6e-14 80.5 48 81.2
TWI56G1093 Tripterygium wilfordii HOM05D000246 ORTHO05D007958 4.6e-14 80.5 48 81.2
ATR0829G216 Amborella trichopoda HOM05D000246 ORTHO05D007958 6.1e-14 80.1 48 81.2
Cfa012648 Carpinus fangiana HOM05D000246 ORTHO05D007958 6.1e-14 80.1 48 79.2
AUR62027305 Chenopodium quinoa HOM05D000246 ORTHO05D007958 6.1e-14 80.1 48 81.2
DCAR_004546 Daucus carota HOM05D000246 ORTHO05D007958 6.1e-14 80.1 48 81.2
Potri.003G104300 Populus trichocarpa HOM05D000246 ORTHO05D007958 6.1e-14 80.1 48 83.3
CDE04G0310 Ceratophyllum demersum HOM05D000246 ORTHO05D007958 7.9e-14 79.7 48 79.2
Ciclev10001056m.g Citrus clementina HOM05D000246 ORTHO05D007958 7.9e-14 79.7 48 81.2
Lalb_Chr16g0380641 Lupinus albus HOM05D000246 ORTHO05D007958 7.9e-14 79.7 48 79.2
HPP92_003405 Vanilla planifolia HOM05D000246 ORTHO05D007958 7.9e-14 79.7 48 79.2
HPP92_003426 Vanilla planifolia HOM05D000246 ORTHO05D007958 7.9e-14 79.7 48 79.2
Actinidia03316 Actinidia chinensis HOM05D000246 ORTHO05D007958 1.0e-13 79.3 48 81.2
Cpa.g.sc137.23 Carica papaya HOM05D000246 ORTHO05D007958 1.0e-13 79.3 48 79.2
Migut.A00506 Erythranthe guttata HOM05D000246 ORTHO05D007958 1.4e-13 79.0 48 81.2
Sabra03G0071300 Salix brachista HOM05D000246 ORTHO05D007958 1.4e-13 79.0 48 81.2
TAR629G0378 Trochodendron aralioides HOM05D000246 ORTHO05D007958 1.4e-13 79.0 48 81.2
vmacro05182 Vaccinium macrocarpon HOM05D000246 ORTHO05D007958 1.4e-13 79.0 48 79.2
CSS0002005 Camellia sinensis var. sinensis HOM05D000246 ORTHO05D007958 1.8e-13 78.6 48 81.2
MBI04_g30770_MAGBIO Magnolia biondii HOM05D000246 ORTHO05D007958 1.8e-13 78.6 48 79.2
MSTRG.11835 Avicennia marina HOM05D000246 ORTHO05D007958 2.3e-13 78.2 48 81.2
Cc00_g05210 Coffea canephora HOM05D000246 ORTHO05D007958 2.3e-13 78.2 48 79.2
HanXRQChr03g0082361 Helianthus annuus HOM05D000246 ORTHO05D007958 2.3e-13 78.2 48 77.1
PGR042G2144 Punica granatum HOM05D000246 ORTHO05D007958 2.3e-13 78.2 48 79.2
THA.LOC104814374 Tarenaya hassleriana HOM05D000246 ORTHO05D007958 2.3e-13 78.2 48 81.2
ECA240G3403 Erigeron canadensis HOM05D000246 ORTHO05D007958 3.0e-13 77.8 48 79.2
PSO063G2533 Papaver somniferum HOM05D000246 ORTHO05D007958 3.0e-13 77.8 48 77.1
Hund14322 Selenicereus undatus HOM05D000246 ORTHO05D007958 3.0e-13 77.8 48 77.1
SEGI_13716 Sequoiadendron giganteum HOM05D000246 ORTHO05D007958 3.0e-13 77.8 48 79.2
Gohir.A08G228200 Gossypium hirsutum HOM05D000246 ORTHO05D007958 3.9e-13 77.4 48 77.1
Thecc.03G325100 Theobroma cacao HOM05D000246 ORTHO05D007958 3.9e-13 77.4 48 77.1
Zm00001eb026880 Zea mays HOM05D000246 ORTHO05D007958 5.1e-13 77.0 48 77.1
AagrBONN_evm.TU.Sc2ySwM_228.4542 Anthoceros agrestis HOM05D000246 ORTHO05D007958 6.7e-13 76.6 48 77.1
Nitab4.5_0001131g0040 Nicotiana tabacum HOM05D000246 ORTHO05D007958 8.8e-13 76.3 48 79.2
Pp3c5_19440 Physcomitrium patens HOM05D000246 ORTHO05D007958 8.8e-13 76.3 48 77.1
Atru.chr6.2110 Acer truncatum HOM05D000246 ORTHO05D007958 1.1e-12 75.9 48 77.1
Ah.02g117420 Amaranthus hybridus HOM05D000246 ORTHO05D007958 1.1e-12 75.9 48 79.2
CSS0007497 Camellia sinensis var. sinensis HOM05D000246 ORTHO05D007958 1.1e-12 75.9 48 79.2
Gohir.D08G248500 Gossypium hirsutum HOM05D000246 ORTHO05D007958 1.1e-12 75.9 48 77.1
Sc23g0003460 Simmondsia chinensis HOM05D000246 ORTHO05D007958 1.1e-12 75.9 48 77.1
Nitab4.5_0000907g0060 Nicotiana tabacum HOM05D000246 ORTHO05D007958 1.9e-12 75.1 48 77.1
Peaxi162Scf00445g00913 Petunia axillaris HOM05D000246 ORTHO05D007958 1.9e-12 75.1 48 77.1
Oeu026041.1 Olea europaea HOM05D000246 ORTHO05D007958 4.3e-12 73.9 48 75.0
PGSC0003DMG400029604 Solanum tuberosum HOM05D000246 ORTHO05D007958 4.3e-12 73.9 51 74.5
CAN.G195.30 Capsicum annuum HOM05D000246 ORTHO05D007958 5.7e-12 73.6 48 77.1
Duzib205G1660 Durio zibethinus HOM05D000246 ORTHO05D007958 5.7e-12 73.6 48 75.0
Phvul.002G126800 Phaseolus vulgaris HOM05D000246 ORTHO05D007958 5.7e-12 73.6 48 77.1
Solyc08g074600.4 Solanum lycopersicum HOM05D000246 ORTHO05D007958 5.7e-12 73.6 48 77.1
Sopen08g023200 Solanum pennellii HOM05D000246 ORTHO05D007958 5.7e-12 73.6 48 77.1
SGA_v2.0_scaffold27G11715 Striga asiatica HOM05D000246 ORTHO05D007958 5.7e-12 73.6 45 80.0
VMungo1215G2022 Vigna mungo HOM05D000246 ORTHO05D007958 5.7e-12 73.6 48 77.1
AT1G31360 Arabidopsis thaliana HOM05D000246 ORTHO05D007958 7.4e-12 73.2 48 72.9
BcaC07g37758 Brassica carinata HOM05D000246 ORTHO05D007958 7.4e-12 73.2 48 72.9
A08p10580 Brassica napus HOM05D000246 ORTHO05D007958 7.4e-12 73.2 48 72.9
BolC8t48143H Brassica oleracea HOM05D000246 ORTHO05D007958 7.4e-12 73.2 48 72.9
BraA08t33056Z Brassica rapa HOM05D000246 ORTHO05D007958 7.4e-12 73.2 48 72.9
Carub.0001s2981 Capsella rubella HOM05D000246 ORTHO05D007958 7.4e-12 73.2 48 72.9
CsaV3_3G030270 Cucumis sativus L. HOM05D000246 ORTHO05D007958 7.4e-12 73.2 48 75.0
Thhalv10006954m.g Eutrema salsugineum HOM05D000246 ORTHO05D007958 7.4e-12 73.2 48 72.9
Gorai.004G265100 Gossypium raimondii HOM05D000246 ORTHO05D007958 7.4e-12 73.2 48 75.0
AL1G49670 Arabidopsis lyrata HOM05D000246 ORTHO05D007958 9.7e-12 72.8 48 72.9
Mapoly0066s0087 Marchantia polymorpha HOM05D000246 ORTHO05D007958 9.7e-12 72.8 48 75.0
Sp1g27200 Schrenkiella parvula HOM05D000246 ORTHO05D007958 1.3e-11 72.4 48 70.8
Aa31LG2G14550 Aethionema arabicum HOM05D000246 ORTHO05D007958 1.7e-11 72.0 48 72.9
MELO3C022742.2 Cucumis melo HOM05D000246 ORTHO05D007958 1.7e-11 72.0 48 75.0
Manes.17G008200 Manihot esculenta HOM05D000246 ORTHO05D007958 1.7e-11 72.0 48 79.2
SMO174G0029 Selaginella moellendorffii HOM05D000246 ORTHO05D007958 1.7e-11 72.0 48 72.9
BcaB04g18157 Brassica carinata HOM05D000246 ORTHO05D007958 2.2e-11 71.6 48 70.8
CARHR030840 Cardamine hirsuta HOM05D000246 ORTHO05D007958 2.2e-11 71.6 48 70.8
Sed0002229 Sechium edule HOM05D000246 ORTHO05D007958 2.2e-11 71.6 48 75.0
ClCG07G002430 Citrullus lanatus HOM05D000246 ORTHO05D007958 3.7e-11 70.9 48 72.9
Glyma.09G215200 Glycine max HOM05D000246 ORTHO05D007958 3.7e-11 70.9 48 75.0
AUR62030457 Chenopodium quinoa HOM05D000246 ORTHO05D007958 6.3e-11 70.1 41 80.5
SHI03755 Sapria himalayana HOM05D000246 ORTHO05D007958 1.1e-10 69.3 48 70.8
COL.COLO4_35077 Corchorus olitorius HOM05D000246 ORTHO05D007958 5.9e-09 63.5 39 79.5
Medtr5g026590 Medicago truncatula HOM05D000246 ORTHO05D007958 1.3e-08 62.4 50 62.0


User provided reference genes

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