Gene: Solyc08g074600.4

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc08g074600.4
  • Transcript Identifier Solyc08g074600.4.1
  • Gene Type Coding gene
  • Location SL4.0ch08 : 56807557-56843993 : negative

Gene Family Information

  • ID HOM05D000246
  • #Genes/#Species 1713/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc08g074600.4.1
  • uniprot A0A3Q7HSN3
  • gene_id Solyc08g074600

Descriptions

  • Description ATP-dependent DNA helicase (AHRD V3.3 *** A0A1U8GRF1_CAPAN)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000724
IBA
GOA Databasedouble-strand break repair via homologous recombination
GO:0032508
IBA
GOA DatabaseDNA duplex unwinding
GO:0006310
IBA
IEA
GOA DatabaseDNA recombination
GO:0006310
IEA
InterProDNA recombination
GO:0006281
IBA
GOA DatabaseDNA repair
GO:0006268
IBA
GOA DatabaseDNA unwinding involved in DNA replication
GO:0044237
IEA
GOA Databasecellular metabolic process
GO:0044237
IEA
InterProcellular metabolic process

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G31360
GO:0043138
IBA
GOA Database3'-5' DNA helicase activity
GO:0009378
IBA
GOA Databasefour-way junction helicase activity
GO:0004386
IEA
GOA Databasehelicase activity
GO:0004386
IEA
InterProhelicase activity
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0000166
IEA
InterPronucleotide binding
GO:0003678
IEA
GOA DatabaseDNA helicase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
IBA
GOA Databasecytoplasm
GO:0005694
IBA
GOA Databasechromosome
GO:0016592
IBA
GOA Databasemediator complex
GO:0005634
IEA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR004589 DNA helicase, ATP-dependent, RecQ type
IPR010997 HRDC-like superfamily
IPR044876 HRDC domain superfamily
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR001650 Helicase, C-terminal
IPR036388 Winged helix-like DNA-binding domain superfamily
IPR032284 ATP-dependent DNA helicase RecQ, zinc-binding domain
IPR011545 DEAD/DEAH box helicase domain
IPR002121 HRDC domain
Mapman id Description
15.3.4.4.5.3 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.other components.component MED34