Gene: Sopen08g023200

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen08g023200
  • Transcript Identifier Sopen08g023200.2
  • Gene Type Coding gene
  • Location Spenn-ch08 : 62897310-62936561 : negative

Gene Family Information

  • ID HOM05D000246
  • #Genes/#Species 1713/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen08g023200.2

Descriptions

  • Description Encodes a (d)NTP-dependent 3- 5 DNA helicase. This protein can also disrupt D loop structures and may mediate branch migration of Holliday junctions when tested in vitro. The unwinding activity of the enzyme depends on the presence of divalent cations (Mg2 , Mn2 , or Ca2 , but not Zn2 ).(d)NTPs are also required with ATP and dATP supporting the greatest amount of DNA unwinding in vitro. | RECQ helicase L2 (RECQL2) | CONTAINS InterPro DOMAIN/s: RQC domain , DNA helicase, ATP-dependent, RecQ type , DNA helicase, ATP-dependent, RecQ type, N-terminal , DNA/RNA helicase, C-terminal , Helicase, superfamily 1/2, ATP-binding domain , Helicase/RNase D C-terminal, HRDC domain | BEST Arabidopsis thaliana protein match is: DNA helicase (RECQl4A)
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0044237
IEA
InterProcellular metabolic process
GO:0006310
IEA
InterProDNA recombination
GO:0006281
ISO
PLAZA Integrative OrthologyDNA repair AT1G31360
GO:0032508
ISO
PLAZA Integrative OrthologyDNA duplex unwinding AT1G31360

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0000166
IEA
InterPronucleotide binding
GO:0004386
IEA
InterProhelicase activity
GO:0005524
IEA
InterProATP binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G31360
GO:0009378
ISO
PLAZA Integrative Orthologyfour-way junction helicase activity AT1G31360
GO:0043138
ISO
PLAZA Integrative Orthology3'-5' DNA helicase activity AT1G31360

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016592
ISO
PLAZA Integrative Orthologymediator complex AT1G31360

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR002121 HRDC domain
IPR036388 Winged helix-like DNA-binding domain superfamily
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR001650 Helicase, C-terminal
IPR032284 ATP-dependent DNA helicase RecQ, zinc-binding domain
IPR010997 HRDC-like superfamily
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR044876 HRDC domain superfamily
IPR004589 DNA helicase, ATP-dependent, RecQ type
IPR011545 DEAD/DEAH box helicase domain
Mapman id Description
15.3.4.4.5.3 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.other components.component MED34