Gene: AT1G31360

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G31360
  • Transcript Identifier AT1G31360.1
  • Gene Type Coding gene
  • Location Chr1 : 11232422-11237412 : positive

Gene Family Information

  • ID HOM05D000246
  • #Genes/#Species 1713/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G31360.1
  • symbol RECQL2
  • Alias ATRECQ2,ARABIDOPSIS THALIANA RECQ 2,MED34
  • uniprot Q9FT73

Descriptions

  • Description RECQ helicase L2
  • Computational description RECQ helicase L2 (RECQL2); CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RQC domain (InterPro:IPR018982), DNA helicase, ATP-dependent, RecQ type (InterPro:IPR004589), DNA helicase, ATP-dependent, RecQ type, N-terminal (InterPro:IPR018329), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), Helicase/RNase D C-terminal, HRDC domain (InterPro:IPR002121); BEST Arabidopsis thaliana protein match is: DNA helicase (RECQl4A) (TAIR:AT1G10930.1); Has 32628 Blast hits to 32552 proteins in 2916 species: Archae - 507; Bacteria - 20337; Metazoa - 3383; Fungi - 2416; Plants - 1613; Viruses - 17; Other Eukaryotes - 4355 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0044237
IEA
GOA Databasecellular metabolic process
GO:0044237
IEA
InterProcellular metabolic process
GO:0000724
IBA
Gene Ontologydouble-strand break repair via homologous recombination1
GO:0032508
IDA
IBA
Gene OntologyDNA duplex unwinding1 2
GO:0006260
IEA
Gene OntologyDNA replication
GO:0006260
IEA
InterProDNA replication
GO:0006281
IBA
IC, IEA
Gene OntologyDNA repair1 2
GO:0006281
IEA
InterProDNA repair
GO:0006310
IBA
IC, IEA
Gene OntologyDNA recombination1 2
GO:0006310
IEA
InterProDNA recombination
GO:0006268
IBA
Gene OntologyDNA unwinding involved in DNA replication1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0043138
IDA
IBA
IEA
Gene Ontology3'-5' DNA helicase activity1 2
GO:0043138
IEA
InterPro3'-5' DNA helicase activity
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0000166
IEA
InterPronucleotide binding
GO:0004386
IEA
GOA Databasehelicase activity
GO:0004386
IEA
InterProhelicase activity
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0003676
IEA
Gene Ontologynucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0003678
IEA
Gene OntologyDNA helicase activity
GO:0005515
IPI
Gene Ontologyprotein binding3
GO:0009378
IDA
IBA
Gene Ontologyfour-way junction helicase activity1 2

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005694
IBA
Gene Ontologychromosome1
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus
GO:0016592
IDA
IBA
Gene Ontologymediator complex1 4
GO:0005737
IBA
Gene Ontologycytoplasm1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR036388 Winged helix-like DNA-binding domain superfamily
IPR010997 HRDC-like superfamily
IPR001650 Helicase, C-terminal
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR011545 DEAD/DEAH box helicase domain
IPR018982 RQC domain
IPR002121 HRDC domain
IPR004589 DNA helicase, ATP-dependent, RecQ type
IPR044876 HRDC domain superfamily
IPR032284 ATP-dependent DNA helicase RecQ, zinc-binding domain
Mapman id Description
15.3.4.4.5.3 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.other components.component MED34