Gene: Potri.003G104300
General Information
Structural Information
- Species Populus trichocarpa
- Gene Identifier Potri.003G104300
- Transcript Identifier Potri.003G104300.2
- Gene Type Coding gene
- Location Chr03 : 12793293-12803350 : negative
Gene Family Information
- ID HOM05D000246
- #Genes/#Species 1713/100
- Phylogenetic origin
- ID ORTHO05D007958
- #Genes/#Species 125/97
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- id Potri.003G104300.v4.1
- pacid 42785893
- synonym fgenesh4_pg.C_LG_III000822
Descriptions
- Description K10899 - ATP-dependent DNA helicase Q1 [EC:3.6.4.12] (RECQL)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006310 | IEA | InterPro | DNA recombination | |
| GO:0044237 | IEA | InterPro | cellular metabolic process | |
| GO:0006281 | ISO | PLAZA Integrative Orthology | DNA repair | AT1G31360 |
| GO:0032508 | ISO | PLAZA Integrative Orthology | DNA duplex unwinding | AT1G31360 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0004386 | IEA | InterPro | helicase activity | |
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0005524 | IEA | InterPro | ATP binding | |
| GO:0000166 | IEA | InterPro | nucleotide binding | |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT1G31360 |
| GO:0009378 | ISO | PLAZA Integrative Orthology | four-way junction helicase activity | AT1G31360 |
| GO:0043138 | ISO | PLAZA Integrative Orthology | 3'-5' DNA helicase activity | AT1G31360 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0016592 | ISO | PLAZA Integrative Orthology | mediator complex | AT1G31360 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR004589 | DNA helicase, ATP-dependent, RecQ type |
| IPR001650 | Helicase, C-terminal |
| IPR036388 | Winged helix-like DNA-binding domain superfamily |
| IPR014001 | Helicase superfamily 1/2, ATP-binding domain |
| IPR011545 | DEAD/DEAH box helicase domain |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR032284 | ATP-dependent DNA helicase RecQ, zinc-binding domain |
| IPR010997 | HRDC-like superfamily |
| IPR002121 | HRDC domain |
| IPR044876 | HRDC domain superfamily |
| Mapman id | Description |
|---|---|
| 15.3.4.4.5.3 | RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.other components.component MED34 |