Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0303961 Rosa chinensis HOM05D002849 ORTHO05D007186 6.4e-134 480.7 235 100.0
FvH4_2g37771 Fragaria vesca HOM05D002849 ORTHO05D007186 1.4e-128 463.0 231 97.8
FAN20G1564 Fragaria x ananassa HOM05D002849 ORTHO05D007186 8.9e-128 460.3 230 97.4
FAN27G2060 Fragaria x ananassa HOM05D002849 ORTHO05D007186 4.4e-127 458.0 228 98.2
Prupe.1G356900 Prunus persica HOM05D002849 ORTHO05D007186 9.2e-125 450.3 231 94.4
QL02p013578 Quercus lobata HOM05D002849 ORTHO05D007186 4.6e-124 448.0 232 92.7
Gohir.D05G184300 Gossypium hirsutum HOM05D002849 ORTHO05D007186 3.0e-123 445.3 227 94.3
Gorai.009G189800 Gossypium raimondii HOM05D002849 ORTHO05D007186 3.0e-123 445.3 227 94.3
MD08G1004800 Malus domestica HOM05D002849 ORTHO05D007186 3.0e-123 445.3 228 94.3
Gohir.A05G181300 Gossypium hirsutum HOM05D002849 ORTHO05D007186 6.6e-123 444.1 227 93.8
Thecc.08G055100 Theobroma cacao HOM05D002849 ORTHO05D007186 6.6e-123 444.1 227 94.3
Duzib093G2127 Durio zibethinus HOM05D002849 ORTHO05D007186 3.3e-122 441.8 224 94.6
GSVIVG01008705001 Vitis vinifera HOM05D002849 ORTHO05D007186 1.2e-121 439.9 230 91.7
CiPaw.08G071100 Carya illinoinensis HOM05D002849 ORTHO05D007186 2.1e-121 439.1 230 92.2
Atru.chr13.175_Atru.chr13.176 Acer truncatum HOM05D002849 ORTHO05D007186 3.6e-121 438.3 231 91.8
Manes.08G142100 Manihot esculenta HOM05D002849 ORTHO05D007186 4.7e-121 438.0 231 90.9
PGR083G0750 Punica granatum HOM05D002849 ORTHO05D007186 3.1e-120 435.3 233 91.8
TWI56G0831 Tripterygium wilfordii HOM05D002849 ORTHO05D007186 2.0e-119 432.6 227 90.7
Potri.005G083500 Populus trichocarpa HOM05D002849 ORTHO05D007186 3.4e-119 431.8 222 93.7
Dinv39573 Davidia involucrata HOM05D002849 ORTHO05D007186 5.8e-119 431.0 233 88.8
Nn6g31840 Nelumbo nucifera HOM05D002849 ORTHO05D007186 5.8e-119 431.0 224 92.0
TAR376G0763 Trochodendron aralioides HOM05D002849 ORTHO05D007186 7.5e-119 430.6 226 91.2
CANSAT11G2551 Cannabis sativa HOM05D002849 ORTHO05D007186 9.8e-119 430.3 231 88.7
vmacro21838 Vaccinium macrocarpon HOM05D002849 ORTHO05D007186 9.8e-119 430.3 234 88.5
Cfa017767 Carpinus fangiana HOM05D002849 ORTHO05D007186 2.2e-118 429.1 225 92.9
Eucgr.F03540 Eucalyptus grandis HOM05D002849 ORTHO05D007186 2.9e-118 428.7 231 89.6
HanXRQChr17g0533361 Helianthus annuus HOM05D002849 ORTHO05D007186 2.9e-118 428.7 223 91.9
THA.LOC104811452 Tarenaya hassleriana HOM05D002849 ORTHO05D007186 3.7e-118 428.3 231 88.7
Aqoxy6G01855 Aquilegia oxysepala HOM05D002849 ORTHO05D007186 6.4e-118 427.6 225 90.2
AL2G36230 Arabidopsis lyrata HOM05D002849 ORTHO05D007186 6.4e-118 427.6 231 89.2
Hund05132 Selenicereus undatus HOM05D002849 ORTHO05D007186 6.4e-118 427.6 231 88.7
BraA05t19423Z Brassica rapa HOM05D002849 ORTHO05D007186 1.1e-117 426.8 231 88.3
Sc02g0008960 Simmondsia chinensis HOM05D002849 ORTHO05D007186 1.1e-117 426.8 231 88.3
MELO3C011328.2 Cucumis melo HOM05D002849 ORTHO05D007186 1.9e-117 426.0 227 89.0
CARHR069720 Cardamine hirsuta HOM05D002849 ORTHO05D007186 2.4e-117 425.6 231 88.3
CsaV3_2G024550 Cucumis sativus L. HOM05D000201 ORTHO05D000490 2.4e-117 425.6 224 90.2
A05p04470 Brassica napus HOM05D002849 ORTHO05D007186 4.1e-117 424.9 230 88.3
C04p05180 Brassica napus HOM05D002849 ORTHO05D007186 7.1e-117 424.1 232 86.6
Ciclev10001644m.g Citrus clementina HOM05D002849 ORTHO05D007186 9.2e-117 423.7 227 89.9
Thhalv10018770m.g Eutrema salsugineum HOM05D002849 ORTHO05D007186 9.2e-117 423.7 231 87.9
CSS0035799 Camellia sinensis var. sinensis HOM05D002849 ORTHO05D007186 1.6e-116 422.9 230 88.7
Solyc08g074590.2 Solanum lycopersicum HOM05D002849 ORTHO05D007186 1.6e-116 422.9 225 89.3
Sopen08g023190 Solanum pennellii HOM05D002849 ORTHO05D007186 1.6e-116 422.9 225 89.3
Carub.0002s2306 Capsella rubella HOM05D002849 ORTHO05D007186 2.7e-116 422.2 231 87.0
Carub.0004s2686 Capsella rubella HOM05D002849 ORTHO05D007186 3.5e-116 421.8 226 88.9
Aa31LG1G25890 Aethionema arabicum HOM05D002849 ORTHO05D007186 6.0e-116 421.0 228 88.6
A07p41740 Brassica napus HOM05D002849 ORTHO05D007186 6.0e-116 421.0 227 89.0
Sp4g26340 Schrenkiella parvula HOM05D002849 ORTHO05D007186 1.0e-115 420.2 231 86.6
PSO675G6932 Papaver somniferum HOM05D002849 ORTHO05D007186 1.3e-115 419.9 233 86.3
Cc10_g00890 Coffea canephora HOM05D002849 ORTHO05D007186 1.7e-115 419.5 224 90.6
ECA246G5259 Erigeron canadensis HOM05D002849 ORTHO05D007186 1.7e-115 419.5 225 89.3
PSO541G1452 Papaver somniferum HOM05D002849 ORTHO05D007186 1.7e-115 419.5 215 92.6
Lj4A14T52 Lonicera japonica HOM05D002849 ORTHO05D007186 2.3e-115 419.1 232 87.9
Sed0011348 Sechium edule HOM05D002849 ORTHO05D007186 2.3e-115 419.1 231 87.0
AL4G43230 Arabidopsis lyrata HOM05D002849 ORTHO05D007186 3.0e-115 418.7 226 88.5
AT2G44270 Arabidopsis thaliana HOM05D002849 ORTHO05D007186 3.0e-115 418.7 226 88.5
Lsat_1_v5_gn_3_7661 Lactuca sativa HOM05D002849 ORTHO05D007186 3.0e-115 418.7 228 89.0
CARHR139450 Cardamine hirsuta HOM05D002849 ORTHO05D007186 1.1e-114 416.8 216 91.7
ClCG08G013910 Citrullus lanatus HOM05D002849 ORTHO05D007186 1.9e-114 416.0 225 88.9
SGA_v2.0_scaffold19G08599 Striga asiatica HOM05D002849 ORTHO05D007186 1.9e-114 416.0 232 86.6
unitig_744.g24607 Utricularia gibba HOM05D002849 ORTHO05D007186 4.3e-114 414.8 231 86.1
BolC4t22158H Brassica oleracea HOM05D002849 ORTHO05D007186 5.6e-114 414.5 249 81.1
MBI08_g35553_MAGBIO Magnolia biondii HOM05D002849 ORTHO05D007186 1.2e-113 413.3 228 87.3
Cfa014032 Carpinus fangiana HOM05D002849 ORTHO05D007186 1.6e-113 412.9 222 90.1
Migut.N03194 Erythranthe guttata HOM05D002849 ORTHO05D007186 4.7e-113 411.4 223 87.4
BraA07t31703Z Brassica rapa HOM05D002849 ORTHO05D007186 6.2e-113 411.0 242 83.1
Glyma.04G002200 Glycine max HOM05D002849 ORTHO05D007186 1.4e-112 409.8 231 83.5
HPP92_024207 Vanilla planifolia HOM05D002849 ORTHO05D007186 2.3e-112 409.1 230 85.7
Haze_22739 Corylus avellana HOM05D002849 ORTHO05D007186 3.1e-112 408.7 265 78.9
ATR0661G072 Amborella trichopoda HOM05D002849 ORTHO05D007186 4.0e-112 408.3 228 86.8
Os02g0762300 Oryza sativa ssp. japonica HOM05D002849 ORTHO05D007186 1.2e-111 406.8 223 86.5
Zm00001eb255730 Zea mays HOM05D002849 ORTHO05D007186 1.2e-111 406.8 223 86.1
Lalb_Chr23g0264921 Lupinus albus HOM05D002849 ORTHO05D007186 1.5e-111 406.4 225 83.6
Rhsim06G0009600 Rhododendron simsii HOM05D002849 ORTHO05D007186 1.7e-110 402.9 272 75.7
Nitab4.5_0001131g0060 Nicotiana tabacum HOM05D002849 ORTHO05D007186 3.7e-110 401.7 225 86.2
Hma1.2p1_1100F.1_g257100 Hydrangea macrophylla HOM05D002849 ORTHO05D007186 1.9e-109 399.4 234 83.8
Ca_15284_v3 Cicer arietinum L. HOM05D002849 ORTHO05D007186 2.4e-109 399.1 222 83.3
Ca_15420_v3 Cicer arietinum L. HOM05D002849 ORTHO05D007186 2.4e-109 399.1 222 83.3
Peaxi162Scf00166g00641 Petunia axillaris HOM05D002849 ORTHO05D007186 5.4e-109 397.9 230 85.2
Medtr3g118250 Medicago truncatula HOM05D002849 ORTHO05D007186 2.7e-108 395.6 221 83.7
Oeu046334.1 Olea europaea HOM05D002849 ORTHO05D007186 1.3e-107 393.3 201 92.5
C06p50120 Brassica napus HOM05D002849 ORTHO05D007186 3.0e-107 392.1 222 85.6
Lj1g0000302 Lotus japonicus HOM05D002849 ORTHO05D007186 3.0e-107 392.1 225 81.8
BcaB02g08806 Brassica carinata HOM05D002849 ORTHO05D007186 5.1e-107 391.3 222 84.2
BcaNung06602 Brassica carinata HOM05D002849 ORTHO05D007186 6.6e-107 391.0 222 84.2
TAR628G0269 Trochodendron aralioides HOM05D002849 ORTHO05D007186 1.5e-106 389.8 226 85.4
Phvul.009G117600 Phaseolus vulgaris HOM05D002849 ORTHO05D007186 4.3e-106 388.3 231 78.4
DCAR_016752 Daucus carota HOM05D002022 ORTHO05D002056 1.2e-103 380.2 194 91.8
arahy.Tifrunner.gnm1.ann1.ID8SUW Arachis hypogaea HOM05D002849 ORTHO05D007186 1.5e-103 379.8 219 83.1
Os01g0598900 Oryza sativa ssp. japonica HOM05D002849 ORTHO05D007186 1.9e-101 372.9 196 90.3
SMO118G0346 Selaginella moellendorffii HOM05D002849 ORTHO05D007186 9.3e-101 370.5 217 77.0
SHI05854 Sapria himalayana HOM05D002849 ORTHO05D007186 1.7e-99 366.3 223 79.8
Mapoly0148s0040 Marchantia polymorpha HOM05D002849 ORTHO05D007186 5.1e-99 364.8 217 77.0
MD15G1004300 Malus domestica HOM05D002849 ORTHO05D007186 8.7e-99 364.0 208 87.0
COL.COLO4_21615 Corchorus olitorius HOM05D002849 ORTHO05D007186 1.5e-98 363.2 190 94.2
Pp3c27_3320 Physcomitrium patens HOM05D002849 ORTHO05D007186 3.3e-98 362.1 217 76.5
AUR62013834 Chenopodium quinoa HOM05D002849 ORTHO05D007186 2.8e-97 359.0 206 83.5
EL10Ac2g04301 Beta vulgaris HOM05D002849 ORTHO05D007186 3.1e-96 355.5 192 89.1
BcaC08g47111 Brassica carinata HOM05D002849 ORTHO05D007186 5.8e-95 351.3 198 85.4
Cre16.g666100 Chlamydomonas reinhardtii HOM05D002849 ORTHO05D007186 4.9e-94 348.2 205 77.1
VMungo1309G1771 Vigna mungo HOM05D002849 ORTHO05D007186 1.1e-93 347.1 212 76.9
Sp5g31310 Schrenkiella parvula HOM05D002849 ORTHO05D007186 7.1e-93 344.4 228 75.9
CBR_g55299 Chara braunii HOM05D002849 ORTHO05D007186 1.7e-91 339.7 202 74.8
arahy.Tifrunner.gnm1.ann1.D80FKX Arachis hypogaea HOM05D002849 ORTHO05D007186 1.5e-90 336.7 204 80.4
BolC6t40052H Brassica oleracea HOM05D002849 ORTHO05D007186 3.6e-89 332.0 222 75.2
TPR.G36468 Trifolium pratense HOM05D002849 ORTHO05D007186 3.1e-88 328.9 221 72.4
BcaC08g47284 Brassica carinata HOM05D002849 ORTHO05D007186 2.6e-87 325.9 220 74.5
AUR62036771 Chenopodium quinoa HOM05D002849 ORTHO05D007186 2.7e-84 315.8 169 89.3
Ah.01g004180 Amaranthus hybridus HOM05D002849 ORTHO05D007186 3.9e-83 312.0 220 70.9
HPP92_024246 Vanilla planifolia HOM05D002849 ORTHO05D007186 1.4e-80 303.5 178 83.1
PRCOL_00001104 Prasinoderma coloniale HOM05D002849 ORTHO05D007186 5.3e-80 301.6 222 64.9
Haze_27194 Corylus avellana HOM05D002849 ORTHO05D007186 6.9e-80 301.2 227 62.1
Cfa027047 Carpinus fangiana HOM05D002849 ORTHO05D007186 9.3e-77 290.8 216 64.8
AagrBONN_evm.TU.Sc2ySwM_344.4630 Anthoceros agrestis HOM05D002849 ORTHO05D007186 4.6e-76 288.5 158 85.4
Cpa.g.sc26.233 Carica papaya HOM05D002849 ORTHO05D007186 2.2e-62 243.0 231 59.7
Nitab4.5_0000907g0040 Nicotiana tabacum HOM05D002849 ORTHO05D007186 8.8e-59 231.1 188 66.5
AT1G76170 Arabidopsis thaliana HOM05D002849 ORTHO05D007186 1.3e-57 227.3 111 95.5
Peaxi162Scf00445g00105 Petunia axillaris HOM05D002849 ORTHO05D007186 7.2e-53 211.5 154 70.1
VMungo1309G1925 Vigna mungo HOM05D002849 ORTHO05D007186 1.6e-52 210.3 200 57.0
Prupe.3G237200 Prunus persica HOM05D002849 ORTHO05D007186 9.4e-37 157.9 83 89.2
SpUn0523_0010 Schrenkiella parvula HOM05D002849 ORTHO05D007186 3.4e-34 149.4 121 64.5
FAN08G3136 Fragaria x ananassa HOM05D002849 ORTHO05D007186 1.9e-29 133.7 77 89.6
MELO3C004787.2 Cucumis melo HOM05D002849 ORTHO05D007186 1.8e-27 127.1 93 68.8
Gorai.007G371200 Gossypium raimondii HOM05D002849 ORTHO05D047384 4.9e-25 119.0 69 82.6
MELO3C012882.2 Cucumis melo HOM05D002849 ORTHO05D007186 6.3e-25 118.6 74 75.7
Gohir.D11G341150 Gossypium hirsutum HOM05D002849 ORTHO05D047384 2.7e-23 113.2 74 77.0
Psat5g001160 Pisum sativum HOM05D002849 ORTHO05D007186 1.3e-22 110.9 94 60.6
Lj9A176T24 Lonicera japonica HOM05D002849 ORTHO05D007186 5.6e-21 105.5 93 58.1
MELO3C034170.2 Cucumis melo HOM05D002849 ORTHO05D007186 6.8e-19 98.6 54 79.6
MELO3C003855.2 Cucumis melo HOM05D002849 ORTHO05D007186 4.9e-17 92.4 60 73.3
AL7G13010 Arabidopsis lyrata HOM05D002849 ORTHO05D007186 9.8e-10 68.2 34 82.4
BcaB01g01492 Brassica carinata HOM05D002849 ORTHO05D027174 1.4e-08 64.3 44 68.2


User provided reference genes

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