Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0060221 Rosa chinensis HOM05D005431 ORTHO05D006762 1.1e-235 819.7 453 100.0
FAN16G2474 Fragaria x ananassa HOM05D005431 ORTHO05D006762 3.0e-196 688.7 445 85.2
FvH4_3g32950 Fragaria vesca HOM05D005431 ORTHO05D006762 5.8e-192 674.5 444 81.5
Prupe.6G097200 Prunus persica HOM05D005431 ORTHO05D006762 6.0e-189 664.5 457 78.6
FAN11G0735 Fragaria x ananassa HOM05D005431 ORTHO05D006762 8.6e-188 660.6 435 81.6
MD03G1112900 Malus domestica HOM05D005431 ORTHO05D006762 5.8e-184 647.9 459 75.8
QL07p020652 Quercus lobata HOM05D005431 ORTHO05D006762 1.0e-151 540.8 470 65.5
TWI32G0483 Tripterygium wilfordii HOM05D005431 ORTHO05D006762 2.5e-150 536.2 448 70.8
Lj1g0019204 Lotus japonicus HOM05D005431 ORTHO05D006762 5.3e-145 518.5 439 65.6
COL.COLO4_08630 Corchorus olitorius HOM05D005431 ORTHO05D006762 6.9e-145 518.1 473 63.2
Eucgr.A02076 Eucalyptus grandis HOM05D005431 ORTHO05D006762 6.9e-145 518.1 456 64.7
Thecc.05G259000 Theobroma cacao HOM05D005431 ORTHO05D006762 2.0e-144 516.5 468 63.5
Lj1A1139T47 Lonicera japonica HOM05D005431 ORTHO05D006762 3.4e-144 515.8 467 62.3
arahy.Tifrunner.gnm1.ann1.UBW8VJ Arachis hypogaea HOM05D005431 ORTHO05D006762 1.3e-143 513.8 452 64.6
Glyma.19G109200 Glycine max HOM05D005431 ORTHO05D006762 1.3e-143 513.8 461 64.6
Glyma.16G042800 Glycine max HOM05D005431 ORTHO05D006762 9.4e-142 507.7 444 63.7
Manes.08G148100 Manihot esculenta HOM05D005431 ORTHO05D006762 9.4e-142 507.7 448 64.1
CiPaw.10G000400 Carya illinoinensis HOM05D005431 ORTHO05D006762 2.7e-141 506.1 447 65.5
Sc24g0002060 Simmondsia chinensis HOM05D005431 ORTHO05D006762 4.6e-141 505.4 448 65.8
Gohir.A11G240400 Gossypium hirsutum HOM05D005431 ORTHO05D006762 1.4e-140 503.8 451 65.2
TAR633G0900 Trochodendron aralioides HOM05D005431 ORTHO05D006762 1.4e-140 503.8 475 61.1
CANSAT78G0764 Cannabis sativa HOM05D005431 ORTHO05D006762 3.0e-140 502.7 449 62.8
GSVIVG01020933001 Vitis vinifera HOM05D005431 ORTHO05D006762 1.1e-139 500.7 449 65.7
Dinv18088 Davidia involucrata HOM05D005431 ORTHO05D006762 2.5e-139 499.6 470 60.0
ECA233G5562 Erigeron canadensis HOM05D005431 ORTHO05D006762 3.3e-139 499.2 446 63.0
Oeu051845.1 Olea europaea HOM05D005431 ORTHO05D006762 1.7e-138 496.9 449 61.5
Ca_08254_v3 Cicer arietinum L. HOM05D005431 ORTHO05D006762 3.7e-138 495.7 443 65.7
Ciclev10020067m.g Citrus clementina HOM05D005431 ORTHO05D006762 3.7e-138 495.7 443 65.7
Lalb_Chr14g0364381 Lupinus albus HOM05D005431 ORTHO05D006762 8.2e-138 494.6 441 64.4
Aqoxy2G02389 Aquilegia oxysepala HOM05D005431 ORTHO05D006762 1.1e-137 494.2 462 60.8
CSS0010563 Camellia sinensis var. sinensis HOM05D005431 ORTHO05D006762 1.8e-137 493.4 445 63.8
Medtr7g085290 Medicago truncatula HOM05D005431 ORTHO05D006762 2.4e-137 493.0 445 64.0
Duzib177G0804 Durio zibethinus HOM05D005431 ORTHO05D006762 3.1e-137 492.7 450 64.4
Aqoxy6G02574 Aquilegia oxysepala HOM05D005431 ORTHO05D006762 9.1e-137 491.1 460 61.1
Gohir.D11G249800 Gossypium hirsutum HOM05D005431 ORTHO05D006762 9.1e-137 491.1 470 62.8
HanXRQChr02g0054501 Helianthus annuus HOM05D005431 ORTHO05D006762 9.1e-137 491.1 449 62.6
Lsat_1_v5_gn_6_37921 Lactuca sativa HOM05D005431 ORTHO05D006762 1.5e-136 490.3 437 61.8
PSO339G6142 Papaver somniferum HOM05D005431 ORTHO05D006762 4.5e-136 488.8 451 64.3
Cc10_g14020 Coffea canephora HOM05D005431 ORTHO05D006762 1.7e-135 486.9 455 66.2
Phvul.001G100700 Phaseolus vulgaris HOM05D005431 ORTHO05D006762 1.7e-135 486.9 456 61.0
Potri.013G054300 Populus trichocarpa HOM05D005431 ORTHO05D006762 1.7e-135 486.9 452 63.1
Sabra13G0049000 Salix brachista HOM05D005431 ORTHO05D006762 1.7e-135 486.9 449 63.7
Gorai.007G267600 Gossypium raimondii HOM05D005431 ORTHO05D006762 2.2e-135 486.5 470 62.6
CSS0005177 Camellia sinensis var. sinensis HOM05D005431 ORTHO05D006762 2.9e-135 486.1 449 63.5
PGR042G1130 Punica granatum HOM05D005431 ORTHO05D006762 5.0e-135 485.3 442 63.1
PSO384G4368 Papaver somniferum HOM05D005431 ORTHO05D006762 4.2e-134 482.3 443 63.4
MBI13_g30325_MAGBIO Magnolia biondii HOM05D005431 ORTHO05D006762 7.2e-134 481.5 443 64.3
PGSC0003DMG400001606 Solanum tuberosum HOM05D005431 ORTHO05D006762 9.4e-134 481.1 449 61.5
MSTRG.16956 Avicennia marina HOM05D005431 ORTHO05D006762 2.7e-133 479.6 451 59.4
Atru.chr2.1265 Acer truncatum HOM05D005431 ORTHO05D006762 3.6e-133 479.2 473 60.0
Peaxi162Scf00362g01188 Petunia axillaris HOM05D005431 ORTHO05D006762 2.3e-132 476.5 436 61.5
SalBow1G3497 Salvia bowleyana HOM05D005431 ORTHO05D006762 3.0e-132 476.1 437 62.5
Os03g0326600 Oryza sativa ssp. japonica HOM05D005431 ORTHO05D006762 3.9e-132 475.7 439 61.5
Solyc01g110820.4 Solanum lycopersicum HOM05D005431 ORTHO05D006762 6.7e-132 474.9 451 59.6
Sopen01g052890 Solanum pennellii HOM05D005431 ORTHO05D006762 8.8e-132 474.6 451 61.2
Rhsim06G0113900 Rhododendron simsii HOM05D005431 ORTHO05D006762 4.4e-131 472.2 483 58.2
AUR62035802 Chenopodium quinoa HOM05D005431 ORTHO05D006762 2.4e-129 466.5 442 61.3
THA.LOC104805792 Tarenaya hassleriana HOM05D005431 ORTHO05D006762 5.9e-128 461.8 442 62.9
HPP92_006679 Vanilla planifolia HOM05D005431 ORTHO05D006762 5.9e-128 461.8 443 59.6
Psat3g089720 Pisum sativum HOM05D005431 ORTHO05D006762 3.8e-127 459.1 456 60.7
CDE02G0906 Ceratophyllum demersum HOM05D005431 ORTHO05D006762 1.4e-126 457.2 446 59.9
Zm00001eb015560 Zea mays HOM05D005431 ORTHO05D006762 3.2e-126 456.1 442 57.7
Cfa016425 Carpinus fangiana HOM05D005431 ORTHO05D006762 2.1e-125 453.4 439 60.1
Sp1g07840 Schrenkiella parvula HOM05D005431 ORTHO05D006762 2.1e-125 453.4 431 59.4
BolC5t29482H Brassica oleracea HOM05D005431 ORTHO05D006762 8.0e-125 451.4 435 56.3
C05p07240 Brassica napus HOM05D005431 ORTHO05D006762 1.0e-124 451.1 435 58.6
BraA06t23807Z Brassica rapa HOM05D005431 ORTHO05D006762 1.0e-124 451.1 433 56.1
VMungo1383G2520 Vigna mungo HOM05D005431 ORTHO05D006762 2.8e-122 443.0 459 57.1
A06p05970 Brassica napus HOM05D005431 ORTHO05D006762 4.8e-122 442.2 435 59.1
SGA_v2.0_scaffold32G13347 Striga asiatica HOM05D005431 ORTHO05D006762 1.6e-120 437.2 442 57.5
Haze_19398 Corylus avellana HOM05D005431 ORTHO05D006762 2.2e-119 433.3 458 57.9
Thhalv10007645m.g Eutrema salsugineum HOM05D005431 ORTHO05D006762 2.2e-119 433.3 439 56.0
AT1G09230 Arabidopsis thaliana HOM05D005431 ORTHO05D006762 5.5e-118 428.7 431 53.8
TPR.G5901 Trifolium pratense HOM05D005431 ORTHO05D006762 9.4e-118 427.9 482 52.3
BcaC05g24779 Brassica carinata HOM05D005431 ORTHO05D006762 1.2e-117 427.6 443 56.0
ATR0782G102 Amborella trichopoda HOM05D005431 ORTHO05D006762 2.7e-117 426.4 448 57.4
Aa31LG1G5950 Aethionema arabicum HOM05D005431 ORTHO05D006762 8.0e-117 424.9 480 54.0
Carub.0001s0857 Capsella rubella HOM05D005431 ORTHO05D006762 8.0e-117 424.9 431 57.3
Nitab4.5_0001364g0090 Nicotiana tabacum HOM05D005431 ORTHO05D006762 3.0e-116 422.9 423 59.6
Nn7g35775 Nelumbo nucifera HOM05D005431 ORTHO05D006762 8.8e-116 421.4 444 55.4
AL1G19720 Arabidopsis lyrata HOM05D005431 ORTHO05D006762 1.8e-113 413.7 431 56.1
Duzib128G1128 Durio zibethinus HOM05D005431 ORTHO05D006762 7.7e-112 408.3 444 56.8
arahy.Tifrunner.gnm1.ann1.H79Q9S Arachis hypogaea HOM05D005431 ORTHO05D006762 8.5e-111 404.8 452 56.0
vmacro12472 Vaccinium macrocarpon HOM05D005431 ORTHO05D006762 5.5e-110 402.1 634 44.2
Actinidia02566 Actinidia chinensis HOM05D005431 ORTHO05D006762 4.7e-109 399.1 324 68.2
Sed0005030 Sechium edule HOM05D005431 ORTHO05D006762 3.7e-106 389.4 330 63.9
Cfa011866 Carpinus fangiana HOM05D005431 ORTHO05D006762 4.8e-106 389.0 399 58.9
Haze_21236 Corylus avellana HOM05D005431 ORTHO05D006762 4.5e-104 382.5 375 58.9
Migut.C00530 Erythranthe guttata HOM05D005431 ORTHO05D006762 1.0e-103 381.3 312 65.1
SEGI_41626 Sequoiadendron giganteum HOM05D005431 ORTHO05D006762 1.0e-103 381.3 444 51.1
EL10Ac8g19795 Beta vulgaris HOM05D005431 ORTHO05D006762 2.3e-103 380.2 329 64.7
AUR62027554 Chenopodium quinoa HOM05D005431 ORTHO05D006762 3.7e-98 362.8 396 52.8
arahy.Tifrunner.gnm1.ann1.M3GFZ7 Arachis hypogaea HOM05D005431 ORTHO05D006762 1.2e-93 347.8 392 56.1
CsaV3_6G010080 Cucumis sativus L. HOM05D005431 ORTHO05D006762 8.3e-90 335.1 304 60.2
Cpa.g.sc594.2 Carica papaya HOM05D005431 ORTHO05D006762 2.3e-87 327.0 369 56.6
SMO339G0047 Selaginella moellendorffii HOM05D005431 ORTHO05D006762 2.9e-82 310.1 398 51.0
Potri.019G031700 Populus trichocarpa HOM05D005431 ORTHO05D006762 3.2e-81 306.6 329 57.1
Pp3c5_17010 Physcomitrium patens HOM05D005431 ORTHO05D006762 5.6e-78 295.8 392 44.9
AagrBONN_evm.TU.Sc2ySwM_228.5426 Anthoceros agrestis HOM05D005431 ORTHO05D006762 3.1e-76 290.0 355 49.6
GSVIVG01010770001 Vitis vinifera HOM05D005431 ORTHO05D006762 4.4e-75 286.2 262 64.9
CARHR009190 Cardamine hirsuta HOM05D005431 ORTHO05D006762 9.5e-70 268.5 268 56.3
ClCG02G009850 Citrullus lanatus HOM05D005431 ORTHO05D006762 2.8e-69 266.9 261 55.9
Aqoxy113s003 Aquilegia oxysepala HOM05D005431 ORTHO05D006762 1.1e-62 245.0 424 41.0
CBR_g41665 Chara braunii HOM05D005431 ORTHO05D006762 4.8e-53 213.0 603 33.5
Mapoly0054s0019 Marchantia polymorpha HOM05D005431 ORTHO05D006762 1.8e-52 211.1 276 45.3
Hund08532 Selenicereus undatus HOM05D005431 ORTHO05D006762 8.4e-50 202.2 352 42.6
BcaB03g13279 Brassica carinata HOM05D005431 ORTHO05D006762 2.3e-47 194.1 181 55.2
Rhsim03G0115400 Rhododendron simsii HOM05D005431 ORTHO05D006762 2.1e-45 187.6 333 41.4
Cpa.g.sc3384.1 Carica papaya HOM05D005431 ORTHO05D006762 1.9e-41 174.5 102 83.3
Hund08530 Selenicereus undatus HOM05D005431 ORTHO05D006762 3.9e-39 166.8 97 82.5
Phvul.004G137800 Phaseolus vulgaris HOM05D005431 ORTHO05D006762 5.1e-39 166.4 97 78.4
AagrBONN_evm.TU.Sc2ySwM_117.3064__3065 Anthoceros agrestis HOM05D005431 ORTHO05D006762 2.1e-37 161.0 250 46.0
GSVIVG01010771001 Vitis vinifera HOM05D005431 ORTHO05D006762 3.9e-31 140.2 149 57.7
TPR.G5899 Trifolium pratense HOM05D000002 ORTHO05D000001 5.1e-31 139.8 151 58.3
MELO3C013491.2 Cucumis melo HOM05D005431 ORTHO05D006762 1.4e-25 121.7 179 45.8
MBI05_g33993_MAGBIO Magnolia biondii HOM05D005431 ORTHO05D006762 2.1e-24 117.9 100 61.0
RcHm_v2.0_Chr5g0076741 Rosa chinensis HOM05D005431 ORTHO05D006762 6.1e-24 116.3 63 93.7
MBI05_g45098_MAGBIO Magnolia biondii HOM05D005431 ORTHO05D006762 7.9e-24 115.9 170 52.4
TPR.G552 Trifolium pratense HOM05D005431 ORTHO05D006762 1.5e-22 111.7 101 60.4
Lsat_1_v5_gn_3_133701 Lactuca sativa HOM05D005431 ORTHO05D006762 7.7e-19 99.4 100 58.0
Aqoxy6G02072 Aquilegia oxysepala HOM05D005431 ORTHO05D006762 1.0e-18 99.0 343 30.0
Pp3c25_8310 Physcomitrium patens HOM05D005431 ORTHO05D006762 1.1e-17 95.5 161 38.5
SHI14717 Sapria himalayana HOM05D005431 ORTHO05D006762 1.1e-17 95.5 100 55.0
AagrBONN_evm.TU.Sc2ySwM_228.2880 Anthoceros agrestis HOM05D005431 ORTHO05D006762 1.0e-15 89.0 148 37.8
TPR.G5921 Trifolium pratense HOM05D005431 ORTHO05D006762 1.8e-15 88.2 54 75.9
SHI14712 Sapria himalayana HOM05D000001 ORTHO05D009229 2.0e-14 84.7 49 79.6
C08p12570 Brassica napus HOM05D005431 ORTHO05D006762 4.8e-13 80.1 50 78.0
BolC8t48895H Brassica oleracea HOM05D005431 ORTHO05D006762 4.8e-13 80.1 50 78.0
SHI14714 Sapria himalayana HOM05D005431 ORTHO05D006762 1.1e-12 79.0 52 71.2
SMO116G0263 Selaginella moellendorffii HOM05D005431 ORTHO05D006762 7.7e-11 72.8 81 43.2
SGA_v2.0_scaffold612G53193 Striga asiatica HOM05D005431 ORTHO05D006762 6.5e-10 69.7 50 64.0
CAN.G134.235 Capsicum annuum HOM05D005431 ORTHO05D006762 1.9e-09 68.2 56 55.4
ClCG02G009830 Citrullus lanatus HOM05D005431 ORTHO05D006762 3.2e-09 67.4 41 80.5
Lsat_1_v5_gn_6_94960 Lactuca sativa HOM05D005431 ORTHO05D003355 4.7e-08 63.5 48 66.7
SHI14719 Sapria himalayana HOM05D005431 ORTHO05D006762 4.7e-08 63.5 33 87.9
SEGI_17961 Sequoiadendron giganteum HOM05D005431 ORTHO05D006762 3.9e-07 60.5 115 34.8


User provided reference genes

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