Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0007791 Rosa chinensis HOM05D003850 ORTHO05D004515 1.4e-263 912.5 502 100.0
FAN11G3915 Fragaria x ananassa HOM05D003850 ORTHO05D004515 5.8e-193 677.9 504 75.4
FvH4_3g04782 Fragaria vesca HOM05D003850 ORTHO05D004515 1.1e-191 673.7 504 75.0
FAN16G3024 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.1e-191 673.7 504 74.4
FAN21G1676 Fragaria x ananassa HOM05D003850 ORTHO05D004515 5.4e-191 671.4 496 75.8
FAN03G2951 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.6e-190 669.8 496 75.6
FAN25G2646 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.3e-128 464.2 462 62.3
CSS0032808 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 1.2e-124 451.1 550 57.1
FAN25G3770 Fragaria x ananassa HOM05D003850 ORTHO05D004515 3.7e-123 446.0 592 53.4
QL05p069776 Quercus lobata HOM05D003850 ORTHO05D004515 1.1e-122 444.5 556 56.5
FvH4_3g01042 Fragaria vesca HOM05D003850 ORTHO05D004515 1.2e-121 441.0 566 54.1
RcHm_v2.0_Chr5g0001581 Rosa chinensis HOM05D003850 ORTHO05D004515 1.7e-120 437.2 598 53.7
Nn1g03331 Nelumbo nucifera HOM05D003850 ORTHO05D004515 6.1e-118 428.7 556 56.1
Prupe.4G011300 Prunus persica HOM05D003850 ORTHO05D004515 6.1e-118 428.7 555 53.5
CiPaw.09G102000 Carya illinoinensis HOM05D003850 ORTHO05D004515 8.8e-117 424.9 553 54.8
CANSAT56G0590 Cannabis sativa HOM05D003850 ORTHO05D004515 2.0e-116 423.7 552 53.3
Atru.chr1.2461 Acer truncatum HOM05D003850 ORTHO05D004515 1.8e-114 417.2 554 54.2
CSS0007684 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 1.2e-113 414.5 557 52.1
FAN21G1422 Fragaria x ananassa HOM05D003850 ORTHO05D004515 4.5e-113 412.5 582 51.4
arahy.Tifrunner.gnm1.ann1.IIR6TV Arachis hypogaea HOM05D003850 ORTHO05D004515 1.7e-112 410.6 558 53.4
arahy.Tifrunner.gnm1.ann1.C17RPB Arachis hypogaea HOM05D003850 ORTHO05D004515 3.8e-112 409.5 551 52.5
Ciclev10014841m.g Citrus clementina HOM05D003850 ORTHO05D004515 3.8e-112 409.5 552 54.3
Aqoxy1G04110 Aquilegia oxysepala HOM05D003850 ORTHO05D004515 5.0e-112 409.1 550 51.6
Phvul.006G143600 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 1.9e-111 407.1 554 52.0
MD05G1357300 Malus domestica HOM05D003850 ORTHO05D004515 5.5e-111 405.6 559 54.6
TAR624G0821 Trochodendron aralioides HOM05D003850 ORTHO05D004515 2.1e-110 403.7 554 53.6
MSTRG.7170 Avicennia marina HOM05D003850 ORTHO05D004515 1.0e-109 401.4 555 52.6
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 3.0e-109 399.8 551 52.6
VMungo1215G3075 Vigna mungo HOM05D003850 ORTHO05D004515 1.5e-108 397.5 557 54.0
Duzib160G0220 Durio zibethinus HOM05D003850 ORTHO05D004515 5.7e-108 395.6 575 48.7
Ca_00718_v3 Cicer arietinum L. HOM05D003850 ORTHO05D004515 1.3e-107 394.4 551 50.3
Thecc.06G232700 Theobroma cacao HOM05D003850 ORTHO05D004515 1.3e-107 394.4 568 51.2
RhsimUnG0025700 Rhododendron simsii HOM05D003850 ORTHO05D004515 4.9e-107 392.5 596 50.3
RhsimUnG0028500 Rhododendron simsii HOM05D003850 ORTHO05D004515 4.9e-107 392.5 596 50.3
Eucgr.E03951 Eucalyptus grandis HOM05D003850 ORTHO05D004515 1.8e-106 390.6 559 51.7
Potri.006G009100 Populus trichocarpa HOM05D003850 ORTHO05D004515 3.1e-106 389.8 553 51.4
Glyma.09G009900 Glycine max HOM05D003850 ORTHO05D004515 3.5e-105 386.3 552 51.1
GSVIVG01003352001 Vitis vinifera HOM05D003850 ORTHO05D004515 4.5e-105 386.0 556 53.4
arahy.Tifrunner.gnm1.ann1.97WSNQ Arachis hypogaea HOM05D003850 ORTHO05D004515 7.8e-105 385.2 563 49.2
PSO210G4264 Papaver somniferum HOM05D003850 ORTHO05D004515 2.9e-104 383.3 560 51.1
VMungo0540G1287 Vigna mungo HOM05D003850 ORTHO05D004515 5.0e-104 382.5 554 50.4
THA.LOC104812992 Tarenaya hassleriana HOM05D003850 ORTHO05D004515 8.6e-104 381.7 562 50.5
TAR629G2665 Trochodendron aralioides HOM05D003850 ORTHO05D004515 8.6e-104 381.7 550 52.4
Lalb_Chr20g0119201 Lupinus albus HOM05D003850 ORTHO05D004515 9.5e-103 378.3 552 48.9
Migut.M01390 Erythranthe guttata HOM05D003850 ORTHO05D004515 1.2e-102 377.9 544 50.2
Phvul.003G083500 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 4.7e-102 375.9 556 52.5
Gohir.A06G153120 Gossypium hirsutum HOM05D003850 ORTHO05D004515 1.8e-101 374.0 563 51.2
Gorai.010G186300 Gossypium raimondii HOM05D003850 ORTHO05D004515 1.8e-101 374.0 564 51.6
vmacro15772 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 2.3e-101 373.6 566 50.9
Nitab4.5_0001198g0010 Nicotiana tabacum HOM05D003850 ORTHO05D004515 5.2e-101 372.5 538 51.3
Sopen11g006940 Solanum pennellii HOM05D003850 ORTHO05D004515 5.2e-101 372.5 548 50.0
SalBow8G5272 Salvia bowleyana HOM05D003850 ORTHO05D004515 1.2e-100 371.3 568 50.7
PGR102G0753 Punica granatum HOM05D003850 ORTHO05D004515 1.5e-100 370.9 555 49.9
Gohir.D06G159600 Gossypium hirsutum HOM05D003850 ORTHO05D004515 3.4e-100 369.8 564 51.2
Manes.07G088900 Manihot esculenta HOM05D003850 ORTHO05D004515 3.7e-99 366.3 549 48.6
arahy.Tifrunner.gnm1.ann1.0C9QHL Arachis hypogaea HOM05D003850 ORTHO05D004515 4.9e-99 365.9 566 51.9
TPR.G3343 Trifolium pratense HOM05D003850 ORTHO05D004515 1.1e-98 364.8 573 49.7
HPP92_001629 Vanilla planifolia HOM05D003850 ORTHO05D004515 2.4e-98 363.6 546 48.7
BraA09t38246Z Brassica rapa HOM05D003850 ORTHO05D004515 7.0e-98 362.1 535 50.8
MBI16_g42266_MAGBIO Magnolia biondii HOM05D003850 ORTHO05D004515 7.0e-98 362.1 550 51.1
Sed0003006 Sechium edule HOM05D003850 ORTHO05D004515 9.2e-98 361.7 552 48.2
ATR0751G086 Amborella trichopoda HOM05D003850 ORTHO05D004515 1.6e-97 360.9 563 50.4
Glyma.15G114200 Glycine max HOM05D003850 ORTHO05D004515 1.0e-96 358.2 554 48.4
Cc09_g00920 Coffea canephora HOM05D003850 ORTHO05D004515 2.3e-96 357.1 554 50.5
AL6G47570 Arabidopsis lyrata HOM05D003850 ORTHO05D004515 8.6e-96 355.1 557 49.2
Oeu002760.2 Olea europaea HOM05D003850 ORTHO05D004515 1.5e-95 354.4 587 46.7
MD10G1331000 Malus domestica HOM05D003850 ORTHO05D004515 3.3e-95 353.2 519 53.0
Medtr2g025590 Medicago truncatula HOM05D003850 ORTHO05D004515 4.3e-95 352.8 547 49.0
SGA_v2.0_scaffold4G01878 Striga asiatica HOM05D003850 ORTHO05D004515 2.1e-94 350.5 535 47.1
AT4G12610 Arabidopsis thaliana HOM05D003850 ORTHO05D004515 2.8e-94 350.1 560 49.8
CsaV3_3G028740 Cucumis sativus L. HOM05D003850 ORTHO05D004515 3.6e-94 349.7 554 47.3
Potri.016G015100 Populus trichocarpa HOM05D003850 ORTHO05D004515 3.6e-94 349.7 553 49.4
Sabra06G0006900 Salix brachista HOM05D003850 ORTHO05D004515 8.0e-94 348.6 550 48.2
Actinidia39269 Actinidia chinensis HOM05D003850 ORTHO05D004515 1.8e-93 347.4 367 60.5
BolC9t56221H Brassica oleracea HOM05D003850 ORTHO05D004515 2.3e-93 347.1 542 48.9
C03p36090 Brassica napus HOM05D003850 ORTHO05D004515 3.1e-93 346.7 551 49.0
TWI63G0294 Tripterygium wilfordii HOM05D003850 ORTHO05D004515 3.1e-93 346.7 518 51.7
BcaC01g04577 Brassica carinata HOM05D003850 ORTHO05D004515 4.0e-93 346.3 553 48.8
BolC3t15918H Brassica oleracea HOM05D003850 ORTHO05D004515 4.0e-93 346.3 553 48.8
Sabra16G0000900 Salix brachista HOM05D003850 ORTHO05D004515 4.0e-93 346.3 538 45.7
Sabra16G0017100 Salix brachista HOM05D003850 ORTHO05D004515 2.6e-92 343.6 557 44.5
ClCG07G001740 Citrullus lanatus HOM05D003850 ORTHO05D004515 4.4e-92 342.8 550 48.4
A03p29830 Brassica napus HOM05D003850 ORTHO05D004515 5.8e-92 342.4 552 48.6
BraA03t12173Z Brassica rapa HOM05D003850 ORTHO05D004515 7.5e-92 342.0 553 48.6
Cfa000110 Carpinus fangiana HOM05D003850 ORTHO05D004515 1.3e-91 341.3 554 48.0
Nitab4.5_0000143g0310 Nicotiana tabacum HOM05D003850 ORTHO05D004515 1.7e-91 340.9 538 49.6
Cpa.g.sc75.120 Carica papaya HOM05D003850 ORTHO05D004515 2.9e-91 340.1 552 49.6
PSO302G0165 Papaver somniferum HOM05D003850 ORTHO05D004515 3.7e-91 339.7 555 46.3
PSO339G3925 Papaver somniferum HOM05D003850 ORTHO05D004515 3.7e-91 339.7 551 49.2
AUR62021872 Chenopodium quinoa HOM05D003850 ORTHO05D004515 8.3e-91 338.6 548 43.6
SEGI_18521 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 1.9e-90 337.4 567 48.1
Lj4g0025543 Lotus japonicus HOM05D003850 ORTHO05D004515 2.4e-90 337.0 551 46.8
A09p26740 Brassica napus HOM05D003850 ORTHO05D004515 7.0e-90 335.5 520 49.8
ECA233G3046 Erigeron canadensis HOM05D003850 ORTHO05D004515 1.2e-89 334.7 559 48.8
Carub.0006s3188 Capsella rubella HOM05D003850 ORTHO05D004515 2.3e-88 330.5 556 48.0
BcaB01g01757 Brassica carinata HOM05D003850 ORTHO05D004515 6.6e-88 328.9 531 47.3
vmacro03646 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 8.6e-88 328.6 565 44.8
COL.COLO4_31876 Corchorus olitorius HOM05D003850 ORTHO05D004515 1.1e-87 328.2 548 46.0
Aa31LG9G10040 Aethionema arabicum HOM05D003850 ORTHO05D004515 5.6e-87 325.9 579 46.1
Haze_08659 Corylus avellana HOM05D003850 ORTHO05D004515 1.2e-86 324.7 592 46.1
unitig_748.g7103 Utricularia gibba HOM05D003850 ORTHO05D004515 1.2e-86 324.7 556 43.0
CARHR253560 Cardamine hirsuta HOM05D003850 ORTHO05D004515 1.6e-86 324.3 550 47.8
CiPaw.10G077600 Carya illinoinensis HOM05D003850 ORTHO05D004515 1.6e-86 324.3 502 46.2
Lj2A262G45 Lonicera japonica HOM05D003850 ORTHO05D004515 4.7e-86 322.8 522 48.1
FvH4_2g22070 Fragaria vesca HOM05D003850 ORTHO05D004515 1.1e-85 321.6 526 45.4
Lj6g0013016 Lotus japonicus HOM05D003850 ORTHO05D004515 5.2e-85 319.3 558 47.0
Peaxi162Scf00558g00516 Petunia axillaris HOM05D003850 ORTHO05D004515 5.2e-85 319.3 493 50.7
SHI24464 Sapria himalayana HOM05D003850 ORTHO05D004515 1.2e-84 318.2 538 45.9
Solyc11g012150.3 Solanum lycopersicum HOM05D003850 ORTHO05D004515 2.2e-83 313.9 509 48.3
BcaB01g02623 Brassica carinata HOM05D003850 ORTHO05D004515 3.7e-83 313.2 534 47.6
PGSC0003DMG400013344 Solanum tuberosum HOM05D003850 ORTHO05D004515 6.4e-83 312.4 510 48.0
FAN24G0125 Fragaria x ananassa HOM05D003850 ORTHO05D008045 4.1e-82 309.7 526 44.7
BcaC04g21251 Brassica carinata HOM05D003850 ORTHO05D004515 2.7e-81 307.0 520 48.1
C09p33830 Brassica napus HOM05D003850 ORTHO05D004515 2.7e-81 307.0 520 48.1
RhsimUnG0109100 Rhododendron simsii HOM05D003850 ORTHO05D004515 7.8e-81 305.4 509 44.4
Sp6g04900 Schrenkiella parvula HOM05D003850 ORTHO05D004515 3.9e-80 303.1 549 43.7
HanXRQChr15g0470091 Helianthus annuus HOM05D003850 ORTHO05D004515 4.7e-78 296.2 530 47.2
CAN.G1186.28 Capsicum annuum HOM05D003850 ORTHO05D004515 6.2e-78 295.8 549 43.4
Thhalv10028564m.g Eutrema salsugineum HOM05D003850 ORTHO05D004515 5.2e-77 292.7 552 44.2
Zm00001eb224360 Zea mays HOM05D003850 ORTHO05D004515 2.6e-76 290.4 486 51.0
CDE04G2591 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 3.4e-76 290.0 532 42.7
Hund23984 Selenicereus undatus HOM05D003850 ORTHO05D004515 5.8e-76 289.3 564 45.9
Oeu044421.3 Olea europaea HOM05D003850 ORTHO05D004515 1.3e-75 288.1 335 54.6
Pp3c3_2280 Physcomitrium patens HOM05D003850 ORTHO05D004515 3.8e-75 286.6 554 43.0
Rhsim13G0146600 Rhododendron simsii HOM05D003850 ORTHO05D004515 4.2e-74 283.1 563 40.1
Lj8A171G42 Lonicera japonica HOM05D003850 ORTHO05D004515 1.7e-72 277.7 532 41.4
Mapoly0105s0015 Marchantia polymorpha HOM05D003850 ORTHO05D004515 2.6e-68 263.8 575 39.7
CDE06G1774 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 5.8e-68 262.7 334 48.2
EL10Ac8g20176 Beta vulgaris HOM05D003850 ORTHO05D004515 1.3e-67 261.5 553 44.3
Psat1g176560 Pisum sativum HOM05D003850 ORTHO05D004515 6.4e-67 259.2 469 47.3
Zm00001eb398520 Zea mays HOM05D003850 ORTHO05D004515 2.4e-66 257.3 543 38.1
TPR.G34491 Trifolium pratense HOM05D003850 ORTHO05D004515 3.6e-62 243.4 200 63.5
Lsat_1_v5_gn_7_13561 Lactuca sativa HOM05D003850 ORTHO05D004515 4.0e-61 240.0 507 45.4
MELO3C012788.2 Cucumis melo HOM05D003850 ORTHO05D004515 8.4e-59 232.3 474 43.0
FAN21G0780 Fragaria x ananassa HOM05D003850 ORTHO05D004515 2.1e-57 227.6 205 70.7
Duzib235G1223 Durio zibethinus HOM05D003850 ORTHO05D004515 4.6e-57 226.5 416 47.6
AagrBONN_evm.TU.Sc2ySwM_228.4136 Anthoceros agrestis HOM05D003850 ORTHO05D004515 3.7e-54 216.9 371 45.3
DCAR_025996 Daucus carota HOM05D003850 ORTHO05D004515 2.0e-52 211.1 439 41.9
AUR62012783 Chenopodium quinoa HOM05D003850 ORTHO05D004515 2.6e-52 210.7 423 39.5
QL09p006300 Quercus lobata HOM05D003850 ORTHO05D004515 1.6e-49 201.4 373 50.4
Dinv07398 Davidia involucrata HOM05D003850 ORTHO05D004515 2.8e-46 190.7 332 52.7
Peaxi162Scf00015g02110 Petunia axillaris HOM05D003850 ORTHO05D004515 3.4e-44 183.7 293 45.1
SEGI_38016 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 3.4e-44 183.7 328 35.7
Medtr2g025620 Medicago truncatula HOM05D003850 ORTHO05D004515 5.8e-44 183.0 516 37.2
HPP92_001646 Vanilla planifolia HOM05D003850 ORTHO05D004515 9.7e-39 165.6 205 56.1
Actinidia11880 Actinidia chinensis HOM05D003850 ORTHO05D004515 2.1e-33 147.9 296 43.9
Sc17g0007710 Simmondsia chinensis HOM05D003850 ORTHO05D004515 2.7e-33 147.5 367 43.3
TPR.G13041 Trifolium pratense HOM05D003850 ORTHO05D004515 8.8e-32 142.5 368 43.5
HPP92_001645 Vanilla planifolia HOM05D003850 ORTHO05D004515 1.3e-27 128.6 102 63.7
CBR_g38333 Chara braunii HOM05D000019 ORTHO05D000002 1.3e-19 102.1 280 33.9
RcHm_v2.0_Chr6g0288941 Rosa chinensis HOM05D003850 ORTHO05D004515 8.5e-19 99.4 245 40.4
Gorai.002G145900 Gossypium raimondii HOM05D003850 ORTHO05D004515 5.7e-15 86.7 178 48.9
AagrBONN_evm.TU.Sc2ySwM_228.3786 Anthoceros agrestis HOM05D003850 ORTHO05D004515 4.8e-14 83.6 140 38.6
Eucgr.A01650 Eucalyptus grandis HOM05D002251 ORTHO05D004515 1.1e-13 82.4 57 63.2
CDE06G0619 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 7.0e-13 79.7 197 42.1
Lsat_1_v5_gn_5_64561 Lactuca sativa HOM05D003952 ORTHO05D004515 3.5e-12 77.4 166 44.0
VMungo0720G0179 Vigna mungo HOM05D003850 ORTHO05D004515 4.5e-12 77.0 53 64.2
Gohir.D01G119450 Gossypium hirsutum HOM05D003850 ORTHO05D004515 5.9e-12 76.6 91 53.8
PSO384G4333 Papaver somniferum HOM05D003850 ORTHO05D004515 3.6e-09 67.4 219 33.8
SEGI_29277 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 4.7e-09 67.0 229 34.9
TAR629G2548 Trochodendron aralioides HOM05D003850 ORTHO05D004515 6.1e-09 66.6 293 28.3
HPP92_001647 Vanilla planifolia HOM05D003850 ORTHO05D004515 2.3e-08 64.7 108 41.7
Lsat_1_v5_gn_3_78300 Lactuca sativa HOM05D002115 ORTHO05D002263 7.5e-07 59.7 49 61.2
PSO339G5270 Papaver somniferum HOM05D003850 ORTHO05D004515 9.7e-07 59.3 520 24.8
arahy.Tifrunner.gnm1.ann1.N7GRQP Arachis hypogaea HOM05D003850 ORTHO05D004515 8.3e-06 56.2 77 42.9
arahy.Tifrunner.gnm1.ann1.UE8YUV Arachis hypogaea HOM05D003850 ORTHO05D004515 8.3e-06 56.2 77 42.9


User provided reference genes

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