Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0363151 Rosa chinensis HOM05D001458 ORTHO05D006787 1.2e-106 389.8 197 100.0
Nitab4.5_0000848g0150 Nicotiana tabacum HOM05D001458 ORTHO05D006787 1.5e-32 143.7 198 44.9
Nitab4.5_0006316g0010 Nicotiana tabacum HOM05D001458 ORTHO05D006787 1.5e-32 143.7 198 44.9
Sopen09g002080 Solanum pennellii HOM05D001458 ORTHO05D006787 3.4e-32 142.5 198 43.4
PGSC0003DMG400027900 Solanum tuberosum HOM05D001458 ORTHO05D006787 3.4e-32 142.5 198 43.4
CAN.G350.46 Capsicum annuum HOM05D001458 ORTHO05D006787 5.9e-32 141.7 198 43.4
Gohir.D04G116300 Gossypium hirsutum HOM05D001458 ORTHO05D006787 5.9e-32 141.7 198 44.9
Gorai.009G420900 Gossypium raimondii HOM05D001458 ORTHO05D006787 5.9e-32 141.7 198 44.9
Peaxi162Scf01517g00015 Petunia axillaris HOM05D001458 ORTHO05D006787 5.9e-32 141.7 198 43.4
COL.COLO4_27103 Corchorus olitorius HOM05D001458 ORTHO05D006787 7.7e-32 141.4 198 44.4
Ciclev10011761m.g Citrus clementina HOM05D001458 ORTHO05D006787 1.3e-31 140.6 198 44.4
ECA233G5957 Erigeron canadensis HOM05D001458 ORTHO05D006787 1.3e-31 140.6 198 44.4
BcaC06g32012 Brassica carinata HOM05D001458 ORTHO05D006787 1.7e-31 140.2 198 43.9
A10p32900 Brassica napus HOM05D001458 ORTHO05D006787 1.7e-31 140.2 198 43.9
C09p73830 Brassica napus HOM05D001458 ORTHO05D006787 1.7e-31 140.2 198 43.9
BolC9t60117H Brassica oleracea HOM05D001458 ORTHO05D006787 1.7e-31 140.2 198 43.9
BraA10t45327Z Brassica rapa HOM05D001458 ORTHO05D006787 1.7e-31 140.2 198 43.9
Thhalv10015802m.g Eutrema salsugineum HOM05D001458 ORTHO05D006787 1.7e-31 140.2 198 43.9
Sp6g39760 Schrenkiella parvula HOM05D001458 ORTHO05D006787 1.7e-31 140.2 198 43.9
Manes.09G070800 Manihot esculenta HOM05D001458 ORTHO05D006787 2.2e-31 139.8 198 44.4
THA.LOC104816314 Tarenaya hassleriana HOM05D001458 ORTHO05D006787 2.2e-31 139.8 198 44.4
Atru.BG.202.p Acer truncatum HOM05D001458 ORTHO05D006787 2.9e-31 139.4 197 44.7
CsaV3_4G024390 Cucumis sativus L. HOM05D001458 ORTHO05D006787 2.9e-31 139.4 198 44.4
AL6G12090 Arabidopsis lyrata HOM05D001458 ORTHO05D006787 3.8e-31 139.0 198 43.4
AT5G02820 Arabidopsis thaliana HOM05D001458 ORTHO05D006787 3.8e-31 139.0 198 43.4
CANSAT80G0404 Cannabis sativa HOM05D001458 ORTHO05D006787 3.8e-31 139.0 198 44.4
Carub.0006s0162 Capsella rubella HOM05D001458 ORTHO05D006787 3.8e-31 139.0 198 43.4
ClCG04G008770 Citrullus lanatus HOM05D001458 ORTHO05D006787 3.8e-31 139.0 198 44.4
MELO3C003071.2 Cucumis melo HOM05D001458 ORTHO05D006787 3.8e-31 139.0 198 44.4
Hma1.2p1_0350F.1_g132690 Hydrangea macrophylla HOM05D001458 ORTHO05D006787 3.8e-31 139.0 198 43.9
Nn2g10614 Nelumbo nucifera HOM05D001458 ORTHO05D006787 3.8e-31 139.0 198 44.4
CiPaw.09G182000 Carya illinoinensis HOM05D001458 ORTHO05D006787 5.0e-31 138.7 198 44.4
Haze_20671 Corylus avellana HOM05D001458 ORTHO05D006787 5.0e-31 138.7 198 44.4
Eucgr.K03202 Eucalyptus grandis HOM05D001458 ORTHO05D006787 5.0e-31 138.7 198 43.9
Lj3A977T51 Lonicera japonica HOM05D001458 ORTHO05D006787 5.0e-31 138.7 198 43.4
Thecc.05G052100 Theobroma cacao HOM05D001458 ORTHO05D006787 6.5e-31 138.3 198 43.9
CARHR210510 Cardamine hirsuta HOM05D001458 ORTHO05D006787 8.5e-31 137.9 198 43.4
Cfa017488 Carpinus fangiana HOM05D001458 ORTHO05D006787 8.5e-31 137.9 198 43.9
Dinv35695 Davidia involucrata HOM05D001458 ORTHO05D006787 8.5e-31 137.9 198 43.4
EL10Ac7g17326 Beta vulgaris HOM05D001458 ORTHO05D006787 1.1e-30 137.5 198 41.4
DCAR_009271 Daucus carota HOM05D001458 ORTHO05D006787 1.1e-30 137.5 198 43.4
Duzib128G1651 Durio zibethinus HOM05D001458 ORTHO05D006787 1.1e-30 137.5 198 43.9
Gohir.A04G077200 Gossypium hirsutum HOM05D001458 ORTHO05D006787 1.1e-30 137.5 193 45.1
RhsimUnG0119500 Rhododendron simsii HOM05D001458 ORTHO05D006787 1.1e-30 137.5 198 43.4
SGA_v2.0_scaffold94G28657 Striga asiatica HOM05D001458 ORTHO05D006787 1.1e-30 137.5 198 43.9
GSVIVG01025540001 Vitis vinifera HOM05D001458 ORTHO05D006787 1.1e-30 137.5 198 43.9
arahy.Tifrunner.gnm1.ann1.DP4C8A Arachis hypogaea HOM05D001458 ORTHO05D006787 1.4e-30 137.1 198 43.4
CSS0026634 Camellia sinensis var. sinensis HOM05D001458 ORTHO05D006787 1.4e-30 137.1 198 42.9
AUR62040528 Chenopodium quinoa HOM05D001458 ORTHO05D006787 1.4e-30 137.1 198 41.9
AUR62042916 Chenopodium quinoa HOM05D001458 ORTHO05D006787 1.4e-30 137.1 198 41.9
Migut.L01653 Erythranthe guttata HOM05D001458 ORTHO05D006787 1.4e-30 137.1 198 42.9
HanXRQChr02g0051861 Helianthus annuus HOM05D001458 ORTHO05D006787 1.4e-30 137.1 198 43.4
QL07p045562 Quercus lobata HOM05D001458 ORTHO05D006787 1.4e-30 137.1 198 42.9
Sabra06G0104100 Salix brachista HOM05D001458 ORTHO05D006787 1.4e-30 137.1 198 43.4
TAR369G1107 Trochodendron aralioides HOM05D001458 ORTHO05D006787 1.4e-30 137.1 198 42.9
PSO384G1578 Papaver somniferum HOM05D001458 ORTHO05D006787 1.9e-30 136.7 198 42.9
SalBow4G2907 Salvia bowleyana HOM05D001458 ORTHO05D006787 1.9e-30 136.7 198 42.9
TWI18G0556 Tripterygium wilfordii HOM05D001458 ORTHO05D006787 1.9e-30 136.7 198 43.4
arahy.Tifrunner.gnm1.ann1.YX38EM Arachis hypogaea HOM05D001458 ORTHO05D006787 2.5e-30 136.3 198 42.9
Medtr1g067040 Medicago truncatula HOM05D001458 ORTHO05D006787 2.5e-30 136.3 199 43.2
Potri.006G132600 Populus trichocarpa HOM05D001458 ORTHO05D006787 2.5e-30 136.3 198 43.4
vmacro20070 Vaccinium macrocarpon HOM05D001458 ORTHO05D006787 2.5e-30 136.3 198 42.4
Aa31LG1G22080 Aethionema arabicum HOM05D001458 ORTHO05D006787 3.2e-30 136.0 198 42.9
Glyma.10G048300 Glycine max HOM05D001458 ORTHO05D006787 3.2e-30 136.0 198 42.9
Lj5g0024683 Lotus japonicus HOM05D001458 ORTHO05D006787 3.2e-30 136.0 198 42.9
Aqoxy4G03150 Aquilegia oxysepala HOM05D001458 ORTHO05D006787 5.5e-30 135.2 198 41.9
Ca_02309_v3 Cicer arietinum L. HOM05D001458 ORTHO05D006787 5.5e-30 135.2 198 42.9
Glyma.13G136100 Glycine max HOM05D001458 ORTHO05D006787 5.5e-30 135.2 198 42.9
Cc06_g03430 Coffea canephora HOM05D001458 ORTHO05D006787 7.2e-30 134.8 198 42.9
FvH4_1g22710 Fragaria vesca HOM05D001458 ORTHO05D006787 7.2e-30 134.8 198 42.9
FAN23G1932 Fragaria x ananassa HOM05D001458 ORTHO05D006787 7.2e-30 134.8 198 42.9
FAN26G1855 Fragaria x ananassa HOM05D001458 ORTHO05D006787 7.2e-30 134.8 198 42.9
Lalb_Chr21g0314581 Lupinus albus HOM05D001458 ORTHO05D006787 7.2e-30 134.8 198 42.9
Sed0021994 Sechium edule HOM05D001458 ORTHO05D006787 7.2e-30 134.8 198 41.9
Sc07g0006220 Simmondsia chinensis HOM05D001458 ORTHO05D006787 7.2e-30 134.8 198 42.4
RcHm_v2.0_Chr2g0116961 Rosa chinensis HOM05D001458 ORTHO05D006787 9.4e-30 134.4 198 42.9
TPR.G35661 Trifolium pratense HOM05D001458 ORTHO05D006787 9.4e-30 134.4 199 43.2
VMungo0464G1099 Vigna mungo HOM05D001458 ORTHO05D006787 9.4e-30 134.4 198 42.4
Phvul.007G162700 Phaseolus vulgaris HOM05D001458 ORTHO05D006787 1.2e-29 134.0 198 42.4
Psat0ss6317g0080 Pisum sativum HOM05D001458 ORTHO05D006787 1.2e-29 134.0 199 42.7
PSO339G6008 Papaver somniferum HOM05D001458 ORTHO05D006787 1.6e-29 133.7 198 42.4
PGR004G0986 Punica granatum HOM05D001458 ORTHO05D006787 1.6e-29 133.7 198 42.4
MD04G1113900 Malus domestica HOM05D001458 ORTHO05D006787 2.7e-29 132.9 198 40.9
ATR0594G128 Amborella trichopoda HOM05D001458 ORTHO05D006787 6.1e-29 131.7 198 40.9
Prupe.6G243200 Prunus persica HOM05D001458 ORTHO05D006787 6.1e-29 131.7 198 41.9
Oeu034821.1 Olea europaea HOM05D001458 ORTHO05D006787 1.0e-28 131.0 198 42.4
SMO266G0075 Selaginella moellendorffii HOM05D001458 ORTHO05D006787 3.0e-28 129.4 198 38.4
Ah.15g092050 Amaranthus hybridus HOM05D001458 ORTHO05D006787 2.5e-27 126.3 191 40.8
HPP92_003602 Vanilla planifolia HOM05D001458 ORTHO05D006787 2.5e-27 126.3 198 38.9
Os03g0284800 Oryza sativa ssp. japonica HOM05D001458 ORTHO05D006787 4.3e-27 125.6 198 38.9
Zm00001eb013040 Zea mays HOM05D001458 ORTHO05D006787 5.7e-27 125.2 198 38.9
Mapoly0114s0011 Marchantia polymorpha HOM05D001458 ORTHO05D006787 7.4e-27 124.8 198 38.9
AagrBONN_evm.TU.Sc2ySwM_228.407 Anthoceros agrestis HOM05D001458 ORTHO05D006787 9.7e-27 124.4 198 37.9
Cre02.g084800 Chlamydomonas reinhardtii HOM05D001458 ORTHO05D006787 4.1e-25 119.0 198 37.9
Pp3c8_12030 Physcomitrium patens HOM05D001458 ORTHO05D006787 5.3e-25 118.6 198 37.4
Actinidia11230 Actinidia chinensis HOM05D001458 ORTHO05D006787 9.1e-25 117.9 187 40.6
Lsat_1_v5_gn_6_29580 Lactuca sativa HOM05D001458 ORTHO05D006787 1.2e-24 117.5 184 41.3
SEGI_09198 Sequoiadendron giganteum HOM05D001458 ORTHO05D006787 8.5e-23 111.3 184 39.1
MCO01G458 Micromonas commoda HOM05D001458 ORTHO05D006787 1.4e-22 110.5 198 34.8
MBI14_g28308_MAGBIO Magnolia biondii HOM05D001458 ORTHO05D006787 1.9e-22 110.2 184 38.6
Atru.chr8.2536 Acer truncatum HOM05D001458 ORTHO05D006787 2.5e-22 109.8 184 41.8
PRCOL_00005653 Prasinoderma coloniale HOM05D001458 ORTHO05D006787 3.6e-21 105.9 198 33.3
CDE04G2715 Ceratophyllum demersum HOM05D001458 ORTHO05D006787 4.7e-21 105.5 150 40.7
COL.COLO4_22276 Corchorus olitorius HOM05D001458 ORTHO05D006787 6.1e-21 105.1 150 42.7
CBR_g20285 Chara braunii HOM05D001458 ORTHO05D006787 1.1e-19 100.9 184 36.4
FAN19G2533 Fragaria x ananassa HOM05D001458 ORTHO05D006787 3.7e-18 95.9 135 40.7
COL.COLO4_22275 Corchorus olitorius HOM05D001458 ORTHO05D006787 1.5e-16 90.5 114 41.2
Lj5g0003554 Lotus japonicus HOM05D001458 ORTHO05D006787 6.5e-15 85.1 171 34.5
Cpa.g.sc45.25 Carica papaya HOM05D001458 ORTHO05D006787 3.6e-13 79.3 125 43.2
AL2G11120 Arabidopsis lyrata HOM05D001458 ORTHO05D008462 5.2e-12 75.5 192 31.2
Aqoxy4G03152 Aquilegia oxysepala HOM05D001458 ORTHO05D008462 3.3e-11 72.8 208 28.8
FvH4_5g03200 Fragaria vesca HOM05D001458 ORTHO05D008462 3.3e-11 72.8 192 29.2
Thhalv10023831m.g Eutrema salsugineum HOM05D001458 ORTHO05D008462 4.4e-11 72.4 192 29.7
A09p14070 Brassica napus HOM05D001458 ORTHO05D008462 7.4e-11 71.6 192 29.7
BraA09t37054Z Brassica rapa HOM05D001458 ORTHO05D008462 7.4e-11 71.6 192 29.7
Carub.0002s0085 Capsella rubella HOM05D001458 ORTHO05D008462 9.7e-11 71.2 192 29.7
CARHR046990 Cardamine hirsuta HOM05D001458 ORTHO05D008462 1.7e-10 70.5 192 28.6
BolC9t54593H Brassica oleracea HOM05D001458 ORTHO05D008462 2.2e-10 70.1 192 29.7
FAN13G1665 Fragaria x ananassa HOM05D001458 ORTHO05D008462 2.8e-10 69.7 192 29.2
FAN18G0903 Fragaria x ananassa HOM05D001458 ORTHO05D008462 3.7e-10 69.3 192 29.2
RcHm_v2.0_Chr2g0086091 Rosa chinensis HOM05D001458 ORTHO05D020639 4.8e-10 68.9 202 28.2
RcHm_v2.0_Chr2g0089851 Rosa chinensis HOM05D001458 ORTHO05D020639 4.8e-10 68.9 204 28.9
Sp2g00700 Schrenkiella parvula HOM05D001458 ORTHO05D008462 6.3e-10 68.6 192 28.6
Oeu059490.1 Olea europaea HOM05D001458 ORTHO05D008462 1.1e-09 67.8 201 28.4
Prupe.5G106600 Prunus persica HOM05D001458 ORTHO05D008462 1.4e-09 67.4 193 30.1
TPR.G6687 Trifolium pratense HOM05D001458 ORTHO05D008462 1.4e-09 67.4 206 26.7
VMungo1215G0710 Vigna mungo HOM05D001458 ORTHO05D008462 1.4e-09 67.4 206 26.7
Cpa.g.sc2704.1 Carica papaya HOM05D001458 ORTHO05D008462 1.8e-09 67.0 188 28.7
AT1G63990 Arabidopsis thaliana HOM05D001458 ORTHO05D008462 2.4e-09 66.6 192 28.1
Eucgr.E00781 Eucalyptus grandis HOM05D001458 ORTHO05D008462 2.4e-09 66.6 207 28.5
QL12p031785 Quercus lobata HOM05D001458 ORTHO05D008462 2.4e-09 66.6 192 28.6
arahy.Tifrunner.gnm1.ann1.8L89DK Arachis hypogaea HOM05D001458 ORTHO05D008462 3.1e-09 66.2 206 27.2
Ciclev10024616m.g Citrus clementina HOM05D001458 ORTHO05D008462 3.1e-09 66.2 206 27.2
Psat2g183760 Pisum sativum HOM05D001458 ORTHO05D008462 3.1e-09 66.2 206 26.2
RcHm_v2.0_Chr7g0196581 Rosa chinensis HOM05D001458 ORTHO05D008462 3.1e-09 66.2 192 28.1
TAR375G0317 Trochodendron aralioides HOM05D001458 ORTHO05D008462 3.1e-09 66.2 206 28.2
Atru.chr9.2114 Acer truncatum HOM05D001458 ORTHO05D008462 4.1e-09 65.9 192 27.6
Aa31LG2G1080 Aethionema arabicum HOM05D001458 ORTHO05D008462 5.3e-09 65.5 190 27.9
arahy.Tifrunner.gnm1.ann1.C5PCA3 Arachis hypogaea HOM05D007788 ORTHO05D008462 5.3e-09 65.5 206 27.2
GSVIVG01019418001 Vitis vinifera HOM05D001458 ORTHO05D008462 5.3e-09 65.5 192 28.6
Migut.A00719 Erythranthe guttata HOM05D001458 ORTHO05D008462 7.0e-09 65.1 196 29.1
Phvul.002G160000 Phaseolus vulgaris HOM05D001458 ORTHO05D008462 7.0e-09 65.1 206 26.2
SGA_v2.0_scaffold146G36265 Striga asiatica HOM05D001458 ORTHO05D008462 7.0e-09 65.1 187 27.8
SGA_v2.0_scaffold329G48826 Striga asiatica HOM05D001458 ORTHO05D008462 7.0e-09 65.1 187 27.8
CiPaw.11G104800 Carya illinoinensis HOM05D001458 ORTHO05D008462 9.1e-09 64.7 192 29.2
AUR62024460 Chenopodium quinoa HOM05D001458 ORTHO05D008462 9.1e-09 64.7 202 30.2
Glyma.11G021300 Glycine max HOM05D001458 ORTHO05D008462 9.1e-09 64.7 206 26.2
PSO478G0962 Papaver somniferum HOM05D001458 ORTHO05D008462 9.1e-09 64.7 206 27.7
AUR62026049 Chenopodium quinoa HOM05D001458 ORTHO05D008462 1.2e-08 64.3 201 29.9
Medtr5g009990 Medicago truncatula HOM05D001458 ORTHO05D008462 1.2e-08 64.3 206 26.2
Os08g0156900 Oryza sativa ssp. japonica HOM05D001458 ORTHO05D008462 2.6e-08 63.2 185 29.2
Sabra01G0074300 Salix brachista HOM05D001458 ORTHO05D008462 2.6e-08 63.2 192 27.1
Ca_24536_v3 Cicer arietinum L. HOM05D001458 ORTHO05D008462 3.5e-08 62.8 162 29.0
BcaB07g31531 Brassica carinata HOM05D001458 ORTHO05D008462 4.5e-08 62.4 201 27.4
ATR0661G491 Amborella trichopoda HOM05D001458 ORTHO05D008462 5.9e-08 62.0 171 28.7
Aqoxy1G00281 Aquilegia oxysepala HOM05D001458 ORTHO05D006787 5.9e-08 62.0 178 28.7
Cfa012245 Carpinus fangiana HOM05D001458 ORTHO05D008462 5.9e-08 62.0 192 27.1
LjContig00312_ERROPOS870357g0025239 Lotus japonicus HOM05D001458 ORTHO05D008462 5.9e-08 62.0 206 26.2
Gohir.D08G134500 Gossypium hirsutum HOM05D001458 ORTHO05D008462 7.7e-08 61.6 192 28.6
Cc08_g15260 Coffea canephora HOM05D001458 ORTHO05D008462 1.0e-07 61.2 202 27.7
Potri.001G099100 Populus trichocarpa HOM05D001458 ORTHO05D008462 1.7e-07 60.5 192 26.6
RcHm_v2.0_Chr3g0447681 Rosa chinensis HOM05D001458 ORTHO05D006787 1.7e-07 60.5 204 27.9
Sopen08g029900 Solanum pennellii HOM05D001458 ORTHO05D008462 1.7e-07 60.5 192 26.0
unitig_747.g21640 Utricularia gibba HOM05D001458 ORTHO05D007170 1.7e-07 60.5 195 26.2
COL.COLO4_08361 Corchorus olitorius HOM05D001458 ORTHO05D008462 2.2e-07 60.1 192 27.6
Haze_08757 Corylus avellana HOM05D001458 ORTHO05D008462 2.2e-07 60.1 192 26.6
Gohir.A08G114200 Gossypium hirsutum HOM05D001458 ORTHO05D008462 2.2e-07 60.1 201 28.4
Gorai.004G137600 Gossypium raimondii HOM05D001458 ORTHO05D008462 2.2e-07 60.1 201 28.4
Hund15092 Selenicereus undatus HOM05D001458 ORTHO05D008462 2.9e-07 59.7 204 27.0
Thecc.03G286600 Theobroma cacao HOM05D001458 ORTHO05D008462 2.9e-07 59.7 194 27.8
Zm00001eb172550 Zea mays HOM05D001458 ORTHO05D008462 2.9e-07 59.7 199 27.1
FAN04G2019 Fragaria x ananassa HOM05D001458 ORTHO05D008462 3.8e-07 59.3 221 25.3
Duzib205G2063 Durio zibethinus HOM05D001458 ORTHO05D008462 8.5e-07 58.2 201 27.4
Manes.10G032400 Manihot esculenta HOM05D001458 ORTHO05D008462 8.5e-07 58.2 192 27.1
MBI04_g30489_MAGBIO Magnolia biondii HOM05D001458 ORTHO05D008462 1.1e-06 57.8 190 26.8
FAN08G0489 Fragaria x ananassa HOM05D001458 ORTHO05D008462 2.5e-06 56.6 221 24.9
PGR042G0367 Punica granatum HOM05D001458 ORTHO05D008462 2.5e-06 56.6 151 30.5
Sc01g0009860 Simmondsia chinensis HOM05D001458 ORTHO05D008462 2.5e-06 56.6 199 26.1
Ah.09g237560 Amaranthus hybridus HOM05D001458 ORTHO05D008462 3.2e-06 56.2 205 26.8
THA.LOC104823599 Tarenaya hassleriana HOM05D001458 ORTHO05D008462 4.2e-06 55.8 192 25.5
Lj6g0023100 Lotus japonicus HOM05D003976 ORTHO05D004711 5.5e-06 55.5 129 31.8


User provided reference genes

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