Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0362601 Rosa chinensis HOM05D006329 ORTHO05D008357 9.5e-223 776.5 399 100.0
FAN10G3782 Fragaria x ananassa HOM05D006329 ORTHO05D008357 3.3e-199 698.4 403 90.6
FvH4_7g18810 Fragaria vesca HOM05D006329 ORTHO05D008357 2.6e-196 688.7 400 90.2
FAN10G0068 Fragaria x ananassa HOM05D006329 ORTHO05D008357 3.4e-196 688.3 403 89.6
FAN06G3910 Fragaria x ananassa HOM05D006329 ORTHO05D008357 1.1e-194 683.3 400 89.5
FAN06G0494 Fragaria x ananassa HOM05D006329 ORTHO05D008357 4.6e-185 651.4 405 85.9
MD07G1170000 Malus domestica HOM05D006329 ORTHO05D008357 2.8e-166 589.0 397 79.1
FAN03G2323 Fragaria x ananassa HOM05D003507 ORTHO05D004324 1.7e-163 579.7 314 93.9
Prupe.2G208900 Prunus persica HOM05D006329 ORTHO05D008357 4.2e-162 575.1 399 76.2
Sed0004104 Sechium edule HOM05D006329 ORTHO05D008357 8.2e-150 534.3 403 70.5
Atru.chr12.838 Acer truncatum HOM05D003507 ORTHO05D008357 8.5e-147 524.2 378 71.4
Actinidia34805 Actinidia chinensis HOM05D006329 ORTHO05D008357 3.2e-146 522.3 394 72.1
Ciclev10031516m.g Citrus clementina HOM05D006329 ORTHO05D008357 7.2e-146 521.2 384 70.8
QL08p054507 Quercus lobata HOM05D006329 ORTHO05D008357 7.2e-146 521.2 400 71.2
Nitab4.5_0001450g0040 Nicotiana tabacum HOM05D006329 ORTHO05D008357 1.2e-145 520.4 408 67.4
CsaV3_6G036680 Cucumis sativus L. HOM05D006329 ORTHO05D008357 1.6e-145 520.0 404 69.3
Nitab4.5_0001659g0150 Nicotiana tabacum HOM05D006329 ORTHO05D008357 2.1e-145 519.6 408 67.2
MELO3C019822.2 Cucumis melo HOM05D006329 ORTHO05D008357 3.6e-145 518.8 402 69.9
COL.COLO4_17136 Corchorus olitorius HOM05D006329 ORTHO05D008357 4.7e-145 518.5 409 69.7
Manes.05G201000 Manihot esculenta HOM05D006329 ORTHO05D008357 1.0e-144 517.3 417 67.9
Potri.008G035500 Populus trichocarpa HOM05D006329 ORTHO05D008357 2.3e-144 516.2 398 70.9
QL08p054383 Quercus lobata HOM05D006329 ORTHO05D008357 3.0e-144 515.8 400 70.8
CANSAT56G2601 Cannabis sativa HOM05D006329 ORTHO05D008357 1.5e-143 513.5 400 69.0
Sabra08G0023700 Salix brachista HOM05D006329 ORTHO05D008357 2.0e-143 513.1 401 71.3
Thecc.10G083200 Theobroma cacao HOM05D006329 ORTHO05D008357 7.4e-143 511.1 375 71.2
Cc02_g10940 Coffea canephora HOM05D006329 ORTHO05D008357 2.8e-142 509.2 413 66.3
Gohir.A10G203300 Gossypium hirsutum HOM05D006329 ORTHO05D008357 2.8e-142 509.2 414 68.8
THA.LOC104824234 Tarenaya hassleriana HOM05D006329 ORTHO05D008357 4.8e-142 508.4 408 67.2
Duzib114G0755 Durio zibethinus HOM05D006329 ORTHO05D008357 2.4e-141 506.1 407 67.8
Gohir.D10G211400 Gossypium hirsutum HOM05D006329 ORTHO05D008357 2.4e-141 506.1 414 68.1
Gorai.011G237100 Gossypium raimondii HOM05D006329 ORTHO05D008357 2.4e-141 506.1 414 68.1
PGR142G3823 Punica granatum HOM05D006329 ORTHO05D008357 1.2e-140 503.8 404 68.3
Solyc11g008360.3 Solanum lycopersicum HOM05D006329 ORTHO05D008357 3.8e-139 498.8 413 66.1
PGSC0003DMG400007434 Solanum tuberosum HOM05D006329 ORTHO05D008357 6.5e-139 498.0 412 65.8
Glyma.10G207800 Glycine max HOM05D006329 ORTHO05D008357 1.1e-138 497.3 396 66.2
AL4G36440 Arabidopsis lyrata HOM05D006329 ORTHO05D008357 3.2e-138 495.7 417 65.2
ClCG08G007690 Citrullus lanatus HOM05D006329 ORTHO05D008357 4.2e-138 495.4 384 69.0
Thhalv10016747m.g Eutrema salsugineum HOM05D006329 ORTHO05D008357 9.4e-138 494.2 411 65.0
Hma1.2p1_2894F.1_g329960 Hydrangea macrophylla HOM05D006329 ORTHO05D008357 8.0e-137 491.1 403 66.5
BcaB02g09141 Brassica carinata HOM05D006329 ORTHO05D008357 1.8e-136 490.0 405 65.2
TAR623G1379 Trochodendron aralioides HOM05D006329 ORTHO05D008357 2.3e-136 489.6 401 67.1
AT2G39140 Arabidopsis thaliana HOM05D006329 ORTHO05D008357 4.0e-136 488.8 413 64.9
Nn6g35280 Nelumbo nucifera HOM05D006329 ORTHO05D008357 5.2e-136 488.4 390 66.9
MBI18_g02633_MAGBIO Magnolia biondii HOM05D006329 ORTHO05D008357 1.5e-135 486.9 370 68.1
Eucgr.G02867 Eucalyptus grandis HOM05D006329 ORTHO05D008357 2.6e-135 486.1 336 73.5
Carub.0004s2119 Capsella rubella HOM05D006329 ORTHO05D008357 4.4e-135 485.3 413 64.2
CiPaw.01G268700 Carya illinoinensis HOM05D006329 ORTHO05D008357 7.5e-135 484.6 408 65.4
Phvul.007G098900 Phaseolus vulgaris HOM05D006329 ORTHO05D008357 9.8e-135 484.2 383 66.1
SalBow6G7241 Salvia bowleyana HOM05D006329 ORTHO05D008357 2.2e-134 483.0 397 64.7
Sp4g21490 Schrenkiella parvula HOM05D006329 ORTHO05D008357 3.7e-134 482.3 414 62.8
MSTRG.389 Avicennia marina HOM05D006329 ORTHO05D008357 6.3e-134 481.5 399 65.9
arahy.Tifrunner.gnm1.ann1.KFTR8M Arachis hypogaea HOM05D006329 ORTHO05D008357 8.3e-134 481.1 413 63.9
Migut.F01702 Erythranthe guttata HOM05D006329 ORTHO05D008357 1.4e-133 480.3 405 64.2
Aqoxy1G01144 Aquilegia oxysepala HOM05D006329 ORTHO05D008357 5.4e-133 478.4 407 64.1
Cpa.g.sc53.128 Carica papaya HOM05D006329 ORTHO05D008357 2.7e-132 476.1 374 69.8
CARHR133910 Cardamine hirsuta HOM05D006329 ORTHO05D008357 1.3e-131 473.8 410 63.2
PSO063G6532 Papaver somniferum HOM05D006329 ORTHO05D008357 8.5e-131 471.1 393 64.9
CDE03G0204 Ceratophyllum demersum HOM05D006329 ORTHO05D008357 2.5e-130 469.5 384 64.8
PSO339G5012 Papaver somniferum HOM05D006329 ORTHO05D008357 3.2e-130 469.2 396 63.9
Rhsim09G0148200 Rhododendron simsii HOM05D000461 ORTHO05D001829 7.2e-130 468.0 418 62.2
Haze_16856 Corylus avellana HOM05D006329 ORTHO05D008357 2.1e-129 466.5 418 62.0
BraA05t19681Z Brassica rapa HOM05D006329 ORTHO05D008357 1.5e-127 460.3 402 61.7
Ca_10544_v3 Cicer arietinum L. HOM05D006329 ORTHO05D008357 1.5e-127 460.3 401 63.1
TPR.G10288 Trifolium pratense HOM05D006329 ORTHO05D008357 4.4e-127 458.8 408 62.7
A05p07160 Brassica napus HOM05D006329 ORTHO05D008357 7.5e-127 458.0 402 61.7
Medtr1g094190 Medicago truncatula HOM05D006329 ORTHO05D008357 1.7e-126 456.8 406 61.6
arahy.Tifrunner.gnm1.ann1.21BGD2 Arachis hypogaea HOM05D006329 ORTHO05D008357 4.9e-126 455.3 399 62.7
Oeu013841.1 Olea europaea HOM05D006329 ORTHO05D008357 4.9e-126 455.3 391 64.5
Psat6g180040 Pisum sativum HOM05D006329 ORTHO05D008357 1.4e-125 453.8 403 60.5
Lj5g0015116 Lotus japonicus HOM05D006329 ORTHO05D008357 5.4e-125 451.8 417 61.2
SGA_v2.0_scaffold51G18714 Striga asiatica HOM05D006329 ORTHO05D008357 9.1e-125 451.1 383 63.4
GSVIVG01016221001 Vitis vinifera HOM05D006329 ORTHO05D008357 9.1e-125 451.1 276 79.7
ATR0219G015 Amborella trichopoda HOM05D006329 ORTHO05D008357 2.7e-124 449.5 358 66.5
Peaxi162Scf00145g01311 Petunia axillaris HOM05D006329 ORTHO05D008357 8.6e-123 444.5 366 66.4
Sopen11g004170 Solanum pennellii HOM05D006329 ORTHO05D008357 8.6e-123 444.5 299 75.3
BcaC02g12042 Brassica carinata HOM05D006329 ORTHO05D008357 2.5e-122 443.0 333 67.3
C04p08570 Brassica napus HOM05D006329 ORTHO05D008357 2.5e-122 443.0 333 67.3
vmacro04842 Vaccinium macrocarpon HOM05D006329 ORTHO05D008357 5.6e-122 441.8 420 60.0
BolC4t22452H Brassica oleracea HOM05D006329 ORTHO05D008357 3.6e-121 439.1 400 59.2
EL10Ac6g14260 Beta vulgaris HOM05D006329 ORTHO05D008357 3.0e-120 436.0 328 68.3
HanXRQChr14g0456591 Helianthus annuus HOM05D006329 ORTHO05D008357 8.9e-120 434.5 334 68.6
Lalb_Chr21g0313671 Lupinus albus HOM05D006329 ORTHO05D008357 3.4e-119 432.6 421 57.2
Lsat_1_v5_gn_2_113040 Lactuca sativa HOM05D006329 ORTHO05D008357 7.5e-119 431.4 307 71.7
Ah.02g128110 Amaranthus hybridus HOM05D006329 ORTHO05D008357 9.8e-119 431.0 373 61.7
CSS0005771 Camellia sinensis var. sinensis HOM05D006329 ORTHO05D008357 3.5e-116 422.5 397 60.5
DCAR_005490 Daucus carota HOM05D006329 ORTHO05D008357 1.7e-115 420.2 374 63.6
Zm00001eb004240 Zea mays HOM05D006329 ORTHO05D008357 8.6e-115 417.9 381 59.1
Hund20700 Selenicereus undatus HOM05D006329 ORTHO05D008357 6.8e-112 408.3 472 51.7
HPP92_026018 Vanilla planifolia HOM05D006329 ORTHO05D008357 1.5e-111 407.1 349 63.3
CAN.G321.64 Capsicum annuum HOM05D006329 ORTHO05D008357 4.4e-111 405.6 251 78.9
EL10Ac4g09587 Beta vulgaris HOM05D006329 ORTHO05D008357 9.8e-111 404.4 326 64.7
Cfa001679 Carpinus fangiana HOM05D006329 ORTHO05D008357 2.9e-110 402.9 278 72.3
ECA238G1295 Erigeron canadensis HOM05D006329 ORTHO05D001676 2.9e-110 402.9 254 77.2
RhsimUnG0185600 Rhododendron simsii HOM05D000461 ORTHO05D001829 4.6e-108 395.6 379 60.4
Lj3A938T44 Lonicera japonica HOM05D006329 ORTHO05D008357 5.0e-107 392.1 382 62.0
VMungo0251G3605 Vigna mungo HOM05D006329 ORTHO05D008357 1.5e-106 390.6 322 63.7
HPP92_027741 Vanilla planifolia HOM05D006329 ORTHO05D008357 1.1e-104 384.4 305 66.2
Dinv31231 Davidia involucrata HOM05D006329 ORTHO05D008357 3.1e-104 382.9 316 67.7
Os03g0152700 Oryza sativa ssp. japonica HOM05D006329 ORTHO05D008357 2.3e-99 366.7 336 58.3
AUR62002759 Chenopodium quinoa HOM05D006329 ORTHO05D008357 6.2e-97 358.6 360 59.2
Aa31LG5G20460 Aethionema arabicum HOM05D006329 ORTHO05D008357 5.4e-93 345.5 365 56.4
Mapoly0002s0007 Marchantia polymorpha HOM05D006329 ORTHO05D008357 1.7e-91 340.5 269 61.0
Lalb_Chr21g0313541 Lupinus albus HOM05D006329 ORTHO05D008357 6.2e-89 332.0 217 71.9
FAN01G2166 Fragaria x ananassa HOM05D006329 ORTHO05D008357 1.4e-88 330.9 188 91.5
Pp3c7_13640 Physcomitrium patens HOM05D006329 ORTHO05D008357 1.4e-85 320.9 282 60.6
SMO329G0071 Selaginella moellendorffii HOM05D006329 ORTHO05D008357 1.6e-84 317.4 251 61.8
Cfa001678 Carpinus fangiana HOM05D006329 ORTHO05D008357 3.9e-83 312.8 307 59.3
Sc09g0006060 Simmondsia chinensis HOM05D006329 ORTHO05D008357 2.5e-74 283.5 297 57.9
HPP92_026744 Vanilla planifolia HOM05D006329 ORTHO05D008357 4.9e-62 242.7 259 55.2
MCO14G528 Micromonas commoda HOM05D006329 ORTHO05D008357 1.2e-52 211.5 256 44.5
CBR_g29624 Chara braunii HOM05D006329 ORTHO05D008357 5.1e-51 206.1 162 63.0
Cre02.g095121 Chlamydomonas reinhardtii HOM05D006329 ORTHO05D008357 4.2e-45 186.4 334 37.4
PRCOL_00004574 Prasinoderma coloniale HOM05D006329 ORTHO05D008357 1.0e-43 181.8 258 40.3
AUR62014125 Chenopodium quinoa HOM05D006329 ORTHO05D008357 1.1e-40 171.8 152 63.8
Hma1.2p1_2894F.1_g329970 Hydrangea macrophylla HOM05D006329 ORTHO05D008357 2.2e-30 137.5 82 76.8
CAN.G176.13 Capsicum annuum HOM05D006329 ORTHO05D033978 3.0e-27 127.1 83 71.1
AT3G43340 Arabidopsis thaliana HOM05D006329 ORTHO05D008357 5.9e-23 112.8 74 70.3
Pp3s196_90 Physcomitrium patens HOM05D006329 ORTHO05D008357 2.2e-22 110.9 247 30.0
Hma1.2p1_2894F.1_g329973 Hydrangea macrophylla HOM05D006329 ORTHO05D008357 9.8e-18 95.5 57 75.4
Cre07.g323550 Chlamydomonas reinhardtii HOM05D006329 ORTHO05D008357 1.3e-14 85.1 226 29.2
MCO04G216 Micromonas commoda HOM05D006329 ORTHO05D008357 6.5e-14 82.8 258 27.5
Glyma.20G182966 Glycine max HOM05D006329 ORTHO05D028485 1.9e-13 81.3 88 50.0
Potri.010G226901 Populus trichocarpa HOM05D006329 ORTHO05D028485 6.1e-12 76.3 51 76.5
CAN.G184.4 Capsicum annuum HOM05D006329 ORTHO05D028485 3.0e-11 73.9 65 58.5
MCO01G641 Micromonas commoda HOM05D006329 ORTHO05D008357 6.8e-11 72.8 241 26.6
Lalb_Chr21g0313531 Lupinus albus HOM05D006329 ORTHO05D008357 3.7e-09 67.0 105 42.9


User provided reference genes

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