Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL93p0358_0011 Quercus lobata HOM05D003686 ORTHO05D004322 2.7e-104 382.1 206 100.0
QL07p015848 Quercus lobata HOM05D003686 ORTHO05D004322 1.7e-103 379.4 206 93.2
QL04p005272 Quercus lobata HOM05D003686 ORTHO05D004322 3.8e-98 361.7 206 88.3
Haze_04804 Corylus avellana HOM05D003686 ORTHO05D004322 4.8e-77 291.6 208 74.5
CiPaw.07G099200 Carya illinoinensis HOM05D003686 ORTHO05D004322 5.0e-74 281.6 207 74.9
Manes.01G213100 Manihot esculenta HOM05D003686 ORTHO05D004322 3.6e-72 275.4 209 72.2
Potri.003G058400 Populus trichocarpa HOM05D003686 ORTHO05D004322 7.9e-72 274.2 208 74.0
Atru.chr5.1287 Acer truncatum HOM05D003686 ORTHO05D004322 1.0e-71 273.9 207 73.9
Glyma.10G021900 Glycine max HOM05D003686 ORTHO05D004322 1.1e-70 270.4 208 67.8
VMungo0720G0802 Vigna mungo HOM05D003686 ORTHO05D004322 9.7e-70 267.3 207 72.9
Glyma.02G152300 Glycine max HOM05D003686 ORTHO05D004322 2.2e-69 266.2 208 73.1
Gohir.D11G123300 Gossypium hirsutum HOM05D003686 ORTHO05D004322 2.2e-69 266.2 206 68.9
TAR636G2878 Trochodendron aralioides HOM05D003686 ORTHO05D004322 1.4e-68 263.5 206 69.4
TWI14G0352 Tripterygium wilfordii HOM05D003686 ORTHO05D004322 7.7e-67 257.7 207 71.0
COL.COLO4_08036 Corchorus olitorius HOM05D003686 ORTHO05D004322 2.9e-66 255.8 208 66.8
Eucgr.A00286 Eucalyptus grandis HOM05D003686 ORTHO05D004322 4.2e-65 251.9 208 65.9
Gorai.004G053600 Gossypium raimondii HOM05D003686 ORTHO05D004322 7.2e-65 251.1 207 69.1
Nn1g08910 Nelumbo nucifera HOM05D003686 ORTHO05D004322 2.7e-64 249.2 204 69.6
TAR365G0683 Trochodendron aralioides HOM05D003686 ORTHO05D004322 3.6e-64 248.8 238 59.2
Lalb_Chr06g0163281 Lupinus albus HOM05D003686 ORTHO05D004322 1.4e-63 246.9 210 68.1
CiPaw.08G100800 Carya illinoinensis HOM05D003686 ORTHO05D004322 1.8e-63 246.5 206 74.3
Gohir.A08G043900 Gossypium hirsutum HOM05D003686 ORTHO05D004322 3.9e-63 245.4 207 67.1
TAR362G1277 Trochodendron aralioides HOM05D003686 ORTHO05D004322 3.9e-63 245.4 203 66.0
Duzib133G0241 Durio zibethinus HOM05D003686 ORTHO05D004322 8.8e-63 244.2 208 66.3
Gorai.007G132200 Gossypium raimondii HOM05D003686 ORTHO05D004322 2.0e-62 243.0 207 68.1
Gohir.A11G118400 Gossypium hirsutum HOM05D003686 ORTHO05D004322 5.7e-62 241.5 207 68.1
Phvul.007G166600 Phaseolus vulgaris HOM05D003686 ORTHO05D004322 2.2e-61 239.6 208 66.3
Gohir.D08G053600 Gossypium hirsutum HOM05D003686 ORTHO05D004322 6.3e-61 238.0 207 66.7
CANSAT78G2257 Cannabis sativa HOM05D003686 ORTHO05D004322 2.4e-60 236.1 218 66.5
Manes.05G068800 Manihot esculenta HOM05D003686 ORTHO05D004322 5.3e-60 235.0 207 63.3
Lalb_Chr02g0143061 Lupinus albus HOM05D003686 ORTHO05D004322 9.1e-60 234.2 210 65.2
RcHm_v2.0_Chr6g0292481 Rosa chinensis HOM05D003686 ORTHO05D004322 1.2e-59 233.8 209 62.2
Cpa.g.sc9.157 Carica papaya HOM05D003686 ORTHO05D004322 2.0e-59 233.0 208 61.1
Ciclev10022350m.g Citrus clementina HOM05D003686 ORTHO05D004322 2.6e-59 232.6 219 60.7
Eucgr.B02749 Eucalyptus grandis HOM05D003686 ORTHO05D004322 7.7e-59 231.1 207 67.6
Sabra03G0032800 Salix brachista HOM05D003686 ORTHO05D004322 1.0e-58 230.7 191 67.5
TPR.G15798 Trifolium pratense HOM05D003686 ORTHO05D004322 2.9e-58 229.2 212 64.6
Lj5g0005016 Lotus japonicus HOM05D003686 ORTHO05D004322 5.0e-58 228.4 212 63.2
Dinv11293 Davidia involucrata HOM05D003686 ORTHO05D004322 6.5e-58 228.0 207 67.1
Dinv11297 Davidia involucrata HOM05D003686 ORTHO05D004322 1.9e-57 226.5 207 66.7
TWI23G0547 Tripterygium wilfordii HOM05D003686 ORTHO05D004322 1.9e-57 226.5 207 65.2
Aqoxy2G03146 Aquilegia oxysepala HOM05D003686 ORTHO05D004322 3.2e-57 225.7 213 59.6
Sed0010038 Sechium edule HOM05D003686 ORTHO05D004322 1.4e-55 220.3 209 66.0
Duzib138G0197 Durio zibethinus HOM05D003686 ORTHO05D004322 1.8e-55 219.9 207 60.9
QL07p015856 Quercus lobata HOM05D003686 ORTHO05D004322 1.8e-55 219.9 195 65.6
PGR031G1643 Punica granatum HOM05D003686 ORTHO05D004322 3.0e-55 219.2 207 60.4
FAN20G0133 Fragaria x ananassa HOM05D003686 ORTHO05D004322 3.9e-55 218.8 207 61.8
FAN27G0391 Fragaria x ananassa HOM05D003686 ORTHO05D004322 3.9e-55 218.8 207 61.8
Ca_10377_v3 Cicer arietinum L. HOM05D003686 ORTHO05D004322 5.2e-55 218.4 206 60.2
Ca_29655_v3 Cicer arietinum L. HOM05D003686 ORTHO05D004322 5.2e-55 218.4 206 60.2
QL93p0358_0018 Quercus lobata HOM05D003686 ORTHO05D004322 8.8e-55 217.6 195 65.1
Actinidia00703 Actinidia chinensis HOM05D003686 ORTHO05D004322 1.1e-54 217.2 207 63.8
Nn2g12370 Nelumbo nucifera HOM05D003686 ORTHO05D004322 1.5e-54 216.9 183 67.2
FAN15G3346 Fragaria x ananassa HOM05D003686 ORTHO05D004322 9.7e-54 214.2 210 61.0
Rhsim13G0017700 Rhododendron simsii HOM05D003686 ORTHO05D004322 9.7e-54 214.2 225 56.9
Thecc.10G102800 Theobroma cacao HOM05D003686 ORTHO05D004322 9.7e-54 214.2 208 62.5
arahy.Tifrunner.gnm1.ann1.MV1AMG Arachis hypogaea HOM05D003686 ORTHO05D004322 2.2e-53 213.0 208 60.1
FvH4_2g24650 Fragaria vesca HOM05D003686 ORTHO05D004322 1.1e-52 210.7 207 60.4
ClCG09G006530 Citrullus lanatus HOM05D003686 ORTHO05D004322 1.4e-52 210.3 208 63.0
Lj1g0025208 Lotus japonicus HOM05D003686 ORTHO05D004322 3.1e-52 209.1 210 58.6
Ca_09109_v3 Cicer arietinum L. HOM05D003686 ORTHO05D004322 5.3e-52 208.4 177 64.4
GSVIVG01011011001 Vitis vinifera HOM05D003686 ORTHO05D004322 1.0e-50 204.1 186 67.7
CsaV3_7G028310 Cucumis sativus L. HOM05D003686 ORTHO05D004322 1.3e-50 203.8 209 62.2
vmacro17192 Vaccinium macrocarpon HOM05D003686 ORTHO05D004322 1.3e-50 203.8 207 58.0
DCAR_007018 Daucus carota HOM05D003686 ORTHO05D004322 6.5e-50 201.4 212 57.5
MELO3C015891.2 Cucumis melo HOM05D003686 ORTHO05D004322 1.9e-49 199.9 209 62.2
Cfa010467 Carpinus fangiana HOM05D003686 ORTHO05D004322 2.5e-49 199.5 117 81.2
TPR.G18851 Trifolium pratense HOM05D004763 ORTHO05D007492 3.2e-49 199.1 230 56.5
Lsat_1_v5_gn_5_188760 Lactuca sativa HOM05D003686 ORTHO05D004322 7.2e-49 198.0 219 54.3
MD11G1297300 Malus domestica HOM05D003686 ORTHO05D004322 7.2e-49 198.0 213 55.4
ATR0706G002 Amborella trichopoda HOM05D003686 ORTHO05D004322 9.4e-49 197.6 206 57.3
MD03G1275200 Malus domestica HOM05D003686 ORTHO05D004322 1.6e-48 196.8 214 54.7
Psat3g024960 Pisum sativum HOM05D003686 ORTHO05D004322 1.6e-48 196.8 181 65.7
Nitab4.5_0000295g0050 Nicotiana tabacum HOM05D003686 ORTHO05D004322 8.0e-48 194.5 205 56.6
Cc01_g20160 Coffea canephora HOM05D003686 ORTHO05D004322 6.7e-47 191.4 224 54.9
DCAR_012430 Daucus carota HOM05D003686 ORTHO05D004322 8.8e-47 191.0 214 51.9
Prupe.8G251800 Prunus persica HOM05D003686 ORTHO05D004322 2.0e-46 189.9 211 57.8
arahy.Tifrunner.gnm1.ann1.TAZ1K7 Arachis hypogaea HOM05D003686 ORTHO05D004322 2.6e-46 189.5 238 51.7
Medtr1g088990 Medicago truncatula HOM05D003686 ORTHO05D004322 3.3e-46 189.1 230 52.2
Solyc06g008860.3 Solanum lycopersicum HOM05D003686 ORTHO05D004322 9.7e-46 187.6 205 54.1
Sopen06g003610 Solanum pennellii HOM05D003686 ORTHO05D004322 3.7e-45 185.7 206 55.3
PGSC0003DMG400021997 Solanum tuberosum HOM05D003686 ORTHO05D004322 3.7e-45 185.7 205 54.6
Nitab4.5_0004238g0080 Nicotiana tabacum HOM05D003686 ORTHO05D004322 4.8e-45 185.3 205 55.1
MSTRG.21821 Avicennia marina HOM05D003686 ORTHO05D004322 1.4e-44 183.7 187 54.5
Os02g0266100 Oryza sativa ssp. japonica HOM05D003686 ORTHO05D004322 2.4e-44 183.0 121 77.7
HanXRQChr11g0330151 Helianthus annuus HOM05D003686 ORTHO05D004322 3.1e-44 182.6 209 54.1
Solyc01g067830.3 Solanum lycopersicum HOM05D003686 ORTHO05D004322 5.3e-44 181.8 190 56.8
Hma1.2p1_0643F.1_g194695 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 9.1e-44 181.0 151 64.9
Hma1.2p1_0643F.1_g194710 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 9.1e-44 181.0 151 64.9
CDE11G0890 Ceratophyllum demersum HOM05D003686 ORTHO05D004322 3.5e-43 179.1 152 63.8
FAN20G1534 Fragaria x ananassa HOM05D003686 ORTHO05D004322 5.9e-43 178.3 190 58.4
Medtr7g107640 Medicago truncatula HOM05D003686 ORTHO05D004322 7.7e-43 177.9 183 61.7
Hma1.2p1_0643F.1_g194700 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 1.0e-42 177.6 119 74.8
Hma1.2p1_0643F.1_g194711 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 1.0e-42 177.6 119 74.8
HanXRQChr01g0002781 Helianthus annuus HOM05D003686 ORTHO05D004322 1.3e-42 177.2 235 49.4
ECA248G2178 Erigeron canadensis HOM05D003686 ORTHO05D004322 3.8e-42 175.6 271 43.2
Sed0008045 Sechium edule HOM05D003686 ORTHO05D004322 3.8e-42 175.6 208 57.7
Psat6g168000 Pisum sativum HOM05D003686 ORTHO05D004322 5.0e-42 175.3 195 60.5
Migut.N00130 Erythranthe guttata HOM05D003686 ORTHO05D004322 6.5e-42 174.9 207 50.2
FAN24G2968 Fragaria x ananassa HOM05D003686 ORTHO05D004322 8.5e-42 174.5 191 56.5
Sp6g03160 Schrenkiella parvula HOM05D003686 ORTHO05D004322 7.2e-41 171.4 117 75.2
PSO801G0146 Papaver somniferum HOM05D003686 ORTHO05D004322 9.4e-41 171.0 205 56.1
THA.LOC104817532 Tarenaya hassleriana HOM05D003686 ORTHO05D004322 2.1e-40 169.9 149 63.8
CAN.G1006.23 Capsicum annuum HOM05D003686 ORTHO05D004322 2.7e-40 169.5 209 52.2
A03p30600 Brassica napus HOM05D003686 ORTHO05D004322 3.6e-40 169.1 205 53.2
Zm00001eb203990 Zea mays HOM05D003686 ORTHO05D004322 4.7e-40 168.7 115 77.4
Sopen01g029780 Solanum pennellii HOM05D003686 ORTHO05D004322 8.0e-40 167.9 190 58.4
THA.LOC104826011 Tarenaya hassleriana HOM05D003686 ORTHO05D004322 1.4e-39 167.2 207 49.8
BcaB05g23688 Brassica carinata HOM05D003686 ORTHO05D004322 5.2e-39 165.2 117 71.8
BcaB05g23689 Brassica carinata HOM05D003686 ORTHO05D004322 5.2e-39 165.2 117 71.8
Thhalv10028986m.g Eutrema salsugineum HOM05D003686 ORTHO05D004322 5.2e-39 165.2 209 55.0
CAN.G185.6 Capsicum annuum HOM05D003686 ORTHO05D004322 8.8e-39 164.5 206 51.5
BraA03t12240Z Brassica rapa HOM05D003686 ORTHO05D004322 1.2e-38 164.1 203 52.7
ECA247G2101 Erigeron canadensis HOM05D003686 ORTHO05D004322 3.4e-38 162.5 258 48.8
AT4G03120 Arabidopsis thaliana HOM05D003686 ORTHO05D004322 4.4e-38 162.2 120 69.2
BcaB01g02510 Brassica carinata HOM05D003686 ORTHO05D004322 7.5e-38 161.4 115 70.4
BcaB01g01979 Brassica carinata HOM05D003686 ORTHO05D004322 9.8e-38 161.0 210 54.8
CARHR251560 Cardamine hirsuta HOM05D003686 ORTHO05D004322 1.3e-37 160.6 117 71.8
BcaC01g06704 Brassica carinata HOM05D003686 ORTHO05D004322 1.7e-37 160.2 115 69.6
PGSC0003DMG400022854 Solanum tuberosum HOM05D003686 ORTHO05D004322 3.7e-37 159.1 188 59.0
C03p37160 Brassica napus HOM05D003686 ORTHO05D004322 4.8e-37 158.7 122 67.2
BolC3t16013H Brassica oleracea HOM05D003686 ORTHO05D004322 1.1e-36 157.5 114 69.3
Mapoly0103s0046 Marchantia polymorpha HOM05D003686 ORTHO05D004322 1.4e-36 157.1 175 51.4
Lj2P1184T34 Lonicera japonica HOM05D003686 ORTHO05D004322 2.4e-36 156.4 192 50.5
BolC9t53184H Brassica oleracea HOM05D003686 ORTHO05D004322 3.1e-36 156.0 208 54.3
A09p02440 Brassica napus HOM05D003686 ORTHO05D004322 7.0e-36 154.8 207 53.1
BraA09t35891Z Brassica rapa HOM05D003686 ORTHO05D004322 7.0e-36 154.8 207 53.1
CSS0007511 Camellia sinensis var. sinensis HOM05D003686 ORTHO05D004322 1.2e-35 154.1 101 77.2
CSS0037271 Camellia sinensis var. sinensis HOM05D003686 ORTHO05D004322 1.2e-35 154.1 101 77.2
Peaxi162Scf01364g00015 Petunia axillaris HOM05D003686 ORTHO05D004322 1.2e-35 154.1 97 74.2
vmacro14959 Vaccinium macrocarpon HOM05D003686 ORTHO05D004322 7.7e-35 151.4 210 44.3
BolC2t10013H Brassica oleracea HOM05D003686 ORTHO05D004322 1.7e-34 150.2 115 67.0
CSS0048633 Camellia sinensis var. sinensis HOM05D003686 ORTHO05D004322 2.3e-34 149.8 217 50.7
BcaC03g16209 Brassica carinata HOM05D003686 ORTHO05D004322 6.5e-34 148.3 114 66.7
Carub.0006s3393 Capsella rubella HOM05D003686 ORTHO05D004322 6.5e-34 148.3 88 80.7
Nitab4.5_0001149g0030 Nicotiana tabacum HOM05D003686 ORTHO05D004322 8.6e-34 147.9 205 49.3
SGA_v2.0_scaffold172G39059 Striga asiatica HOM05D003686 ORTHO05D004322 1.1e-33 147.5 225 48.0
HPP92_021461 Vanilla planifolia HOM05D003686 ORTHO05D004322 1.5e-33 147.1 180 51.7
EL10Ac2g03326 Beta vulgaris HOM05D003686 ORTHO05D004322 4.2e-33 145.6 191 47.6
Nitab4.5_0001624g0040 Nicotiana tabacum HOM05D003686 ORTHO05D004322 4.2e-33 145.6 205 48.8
BraA02t07500Z Brassica rapa HOM05D003686 ORTHO05D004322 7.2e-33 144.8 152 55.9
PSO339G4974 Papaver somniferum HOM05D003686 ORTHO05D004322 7.2e-33 144.8 201 50.2
COL.COLO4_34092 Corchorus olitorius HOM05D003686 ORTHO05D004322 9.5e-33 144.4 116 64.7
AUR62025901 Chenopodium quinoa HOM05D003686 ORTHO05D004322 2.8e-32 142.9 192 50.5
AUR62025902 Chenopodium quinoa HOM05D003686 ORTHO05D004322 2.8e-32 142.9 192 50.5
SGA_v2.0_scaffold36G14363 Striga asiatica HOM05D003686 ORTHO05D004322 3.6e-32 142.5 161 54.7
Mapoly0087s0074 Marchantia polymorpha HOM05D003686 ORTHO05D004322 1.0e-31 141.0 187 49.7
Sc25g0004660 Simmondsia chinensis HOM05D003686 ORTHO05D004322 1.4e-31 140.6 209 45.0
AUR62029649 Chenopodium quinoa HOM05D003686 ORTHO05D004322 4.0e-31 139.0 197 48.7
SalBow6G6913 Salvia bowleyana HOM05D003686 ORTHO05D004322 8.9e-31 137.9 220 45.0
unitig_61.g26148 Utricularia gibba HOM05D003686 ORTHO05D004322 1.2e-30 137.5 159 54.1
Migut.N02118 Erythranthe guttata HOM05D003686 ORTHO05D004322 5.7e-30 135.2 120 65.0
Migut.O00643 Erythranthe guttata HOM05D003686 ORTHO05D004322 5.7e-30 135.2 120 65.0
Pp3c4_170 Physcomitrium patens HOM05D003686 ORTHO05D004322 9.8e-30 134.4 124 61.3
Lj3A810T51 Lonicera japonica HOM05D003686 ORTHO05D004322 1.3e-29 134.0 177 56.5
Pp3c12_26180 Physcomitrium patens HOM05D003686 ORTHO05D004322 1.3e-29 134.0 124 59.7
A02p25120 Brassica napus HOM05D003686 ORTHO05D004322 2.8e-29 132.9 207 49.3
Oeu022800.1 Olea europaea HOM05D003686 ORTHO05D004322 6.3e-29 131.7 100 70.0
Oeu022802.1 Olea europaea HOM05D003686 ORTHO05D004322 6.3e-29 131.7 100 70.0
Ah.12g061550 Amaranthus hybridus HOM05D003686 ORTHO05D004322 1.4e-28 130.6 227 42.3
AagrBONN_evm.TU.Sc2ySwM_228.930 Anthoceros agrestis HOM05D003686 ORTHO05D004322 3.1e-28 129.4 90 71.1
vmacro02511 Vaccinium macrocarpon HOM05D003686 ORTHO05D004322 1.2e-27 127.5 190 53.2
MSTRG.12592 Avicennia marina HOM05D003686 ORTHO05D004322 1.6e-27 127.1 99 68.7
C09p02540 Brassica napus HOM05D003686 ORTHO05D004322 1.5e-25 120.6 193 50.8
vmacro14957 Vaccinium macrocarpon HOM05D003686 ORTHO05D004322 1.5e-25 120.6 196 42.3
SalBow8G5349 Salvia bowleyana HOM05D003686 ORTHO05D004322 1.9e-25 120.2 180 46.1
Duzib211G0369 Durio zibethinus HOM05D003686 ORTHO05D004322 2.5e-25 119.8 81 70.4
Peaxi162Scf00936g00218 Petunia axillaris HOM05D003686 ORTHO05D004322 8.0e-24 114.8 167 47.3
Psat3g182400 Pisum sativum HOM05D003686 ORTHO05D004322 1.4e-23 114.0 62 82.3
Psat0s3642g0040 Pisum sativum HOM05D000068 ORTHO05D025728 8.9e-23 111.3 62 83.9
SGA_v2.0_scaffold89G27564 Striga asiatica HOM05D003686 ORTHO05D004322 8.9e-23 111.3 250 37.6
unitig_22.g6331 Utricularia gibba HOM05D003686 ORTHO05D004322 2.0e-22 110.2 127 52.0
Hund24902 Selenicereus undatus HOM05D003686 ORTHO05D004322 2.6e-22 109.8 105 60.0
HPP92_021468 Vanilla planifolia HOM05D003686 ORTHO05D004322 3.4e-22 109.4 56 91.1
Peaxi162Scf01067g00002 Petunia axillaris HOM05D003686 ORTHO05D004322 6.4e-21 105.1 96 60.4
Cre09.g401300 Chlamydomonas reinhardtii HOM05D003686 ORTHO05D004322 4.4e-14 82.4 41 82.9
Lj5g0006065 Lotus japonicus HOM05D003686 ORTHO05D004322 1.7e-10 70.5 98 46.9
Lj5g0025755 Lotus japonicus HOM05D003686 ORTHO05D009933 3.0e-10 69.7 66 57.6
PSO384G1636 Papaver somniferum HOM05D000185 ORTHO05D000105 2.8e-08 63.2 183 35.0
PRCOL_00005459 Prasinoderma coloniale HOM05D003686 ORTHO05D004322 3.6e-08 62.8 41 65.9
PSO384G1591 Papaver somniferum HOM05D000185 ORTHO05D000105 4.7e-08 62.4 183 35.0
PSO384G1563 Papaver somniferum HOM05D003686 ORTHO05D004322 2.3e-07 60.1 81 51.9
PSO384G1681 Papaver somniferum HOM05D003686 ORTHO05D004322 2.3e-07 60.1 81 51.9
Aa31LG5G2650 Aethionema arabicum HOM05D003686 ORTHO05D004322 4.4e-06 55.8 129 36.4
CSS0028767 Camellia sinensis var. sinensis HOM05D003686 ORTHO05D004322 7.5e-06 55.1 97 42.3
CSS0035418 Camellia sinensis var. sinensis HOM05D003686 ORTHO05D004322 7.5e-06 55.1 97 42.3


User provided reference genes

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