Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p069776 Quercus lobata HOM05D003850 ORTHO05D004515 7.5e-271 936.8 541 100.0
CiPaw.09G102000 Carya illinoinensis HOM05D003850 ORTHO05D004515 9.9e-223 776.9 542 85.1
CANSAT56G0590 Cannabis sativa HOM05D003850 ORTHO05D004515 1.2e-217 760.0 542 80.4
CSS0032808 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 1.1e-216 756.9 543 79.4
Atru.chr1.2461 Acer truncatum HOM05D003850 ORTHO05D004515 6.9e-216 754.2 544 82.5
TAR624G0821 Trochodendron aralioides HOM05D003850 ORTHO05D004515 1.4e-213 746.5 542 80.6
Nn1g03331 Nelumbo nucifera HOM05D003850 ORTHO05D004515 1.0e-211 740.3 544 80.3
Ciclev10014841m.g Citrus clementina HOM05D003850 ORTHO05D004515 3.0e-211 738.8 543 80.7
CSS0007684 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 1.9e-210 736.1 545 78.3
Duzib160G0220 Durio zibethinus HOM05D003850 ORTHO05D004515 4.0e-208 728.4 554 76.4
TAR629G2665 Trochodendron aralioides HOM05D003850 ORTHO05D004515 1.4e-205 719.9 540 79.8
Potri.006G009100 Populus trichocarpa HOM05D003850 ORTHO05D004515 5.4e-205 718.0 543 80.3
arahy.Tifrunner.gnm1.ann1.C17RPB Arachis hypogaea HOM05D003850 ORTHO05D004515 7.1e-205 717.6 542 76.6
Eucgr.E03951 Eucalyptus grandis HOM05D003850 ORTHO05D004515 2.8e-201 705.7 547 77.9
MSTRG.7170 Avicennia marina HOM05D003850 ORTHO05D004515 3.1e-200 702.2 543 76.4
arahy.Tifrunner.gnm1.ann1.IIR6TV Arachis hypogaea HOM05D003850 ORTHO05D004515 5.3e-200 701.4 543 75.5
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 3.4e-199 698.7 541 77.8
GSVIVG01003352001 Vitis vinifera HOM05D003850 ORTHO05D004515 1.7e-198 696.4 543 78.6
RhsimUnG0025700 Rhododendron simsii HOM05D003850 ORTHO05D004515 8.4e-198 694.1 590 74.4
RhsimUnG0028500 Rhododendron simsii HOM05D003850 ORTHO05D004515 8.4e-198 694.1 590 74.4
Aqoxy1G04110 Aquilegia oxysepala HOM05D003850 ORTHO05D004515 4.2e-197 691.8 545 72.8
Thecc.06G232700 Theobroma cacao HOM05D003850 ORTHO05D004515 6.7e-195 684.5 554 73.1
VMungo1215G3075 Vigna mungo HOM05D003850 ORTHO05D004515 6.7e-195 684.5 544 77.8
Cfa000110 Carpinus fangiana HOM05D003850 ORTHO05D004515 2.5e-194 682.6 543 78.3
Phvul.006G143600 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 4.0e-192 675.2 544 74.1
THA.LOC104812992 Tarenaya hassleriana HOM05D003850 ORTHO05D004515 1.2e-191 673.7 549 72.7
Phvul.003G083500 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 5.8e-191 671.4 544 76.8
Ca_00718_v3 Cicer arietinum L. HOM05D003850 ORTHO05D004515 6.5e-190 667.9 543 72.4
Prupe.4G011300 Prunus persica HOM05D003850 ORTHO05D004515 4.2e-189 665.2 542 73.6
Sed0003006 Sechium edule HOM05D003850 ORTHO05D004515 9.3e-189 664.1 544 73.9
VMungo0540G1287 Vigna mungo HOM05D003850 ORTHO05D004515 1.6e-188 663.3 543 73.1
Migut.M01390 Erythranthe guttata HOM05D003850 ORTHO05D004515 2.1e-188 662.9 542 71.4
Glyma.09G009900 Glycine max HOM05D003850 ORTHO05D004515 6.0e-188 661.4 545 73.4
Haze_08659 Corylus avellana HOM05D003850 ORTHO05D004515 1.8e-187 659.8 582 70.6
Sopen11g006940 Solanum pennellii HOM05D003850 ORTHO05D004515 3.0e-187 659.1 541 73.0
SalBow8G5272 Salvia bowleyana HOM05D003850 ORTHO05D004515 8.7e-187 657.5 554 74.0
PGR102G0753 Punica granatum HOM05D003850 ORTHO05D004515 3.3e-186 655.6 544 74.1
Nitab4.5_0001198g0010 Nicotiana tabacum HOM05D003850 ORTHO05D004515 4.3e-186 655.2 529 74.9
CsaV3_3G028740 Cucumis sativus L. HOM05D003850 ORTHO05D004515 5.7e-186 654.8 542 73.2
Cc09_g00920 Coffea canephora HOM05D003850 ORTHO05D004515 3.7e-185 652.1 543 75.7
MBI16_g42266_MAGBIO Magnolia biondii HOM05D003850 ORTHO05D004515 8.2e-185 651.0 544 73.2
PSO210G4264 Papaver somniferum HOM05D003850 ORTHO05D004515 6.9e-184 647.9 546 71.8
CiPaw.10G077600 Carya illinoinensis HOM05D003850 ORTHO05D004515 1.5e-183 646.7 495 76.8
Gorai.010G186300 Gossypium raimondii HOM05D003850 ORTHO05D004515 5.9e-183 644.8 553 73.8
Potri.016G015100 Populus trichocarpa HOM05D003850 ORTHO05D004515 5.0e-182 641.7 543 74.2
Manes.07G088900 Manihot esculenta HOM05D003850 ORTHO05D004515 6.5e-182 641.3 540 73.7
Gohir.A06G153120 Gossypium hirsutum HOM05D003850 ORTHO05D004515 1.1e-181 640.6 553 73.4
TPR.G3343 Trifolium pratense HOM05D003850 ORTHO05D004515 1.9e-181 639.8 567 71.3
ClCG07G001740 Citrullus lanatus HOM05D003850 ORTHO05D004515 5.5e-181 638.3 542 72.1
Lalb_Chr20g0119201 Lupinus albus HOM05D003850 ORTHO05D004515 7.2e-181 637.9 546 68.9
Sabra06G0006900 Salix brachista HOM05D003850 ORTHO05D004515 1.2e-180 637.1 546 71.4
Oeu002760.2 Olea europaea HOM05D003850 ORTHO05D004515 2.7e-180 636.0 578 70.2
Gohir.D06G159600 Gossypium hirsutum HOM05D003850 ORTHO05D004515 7.9e-180 634.4 553 73.1
MD05G1357300 Malus domestica HOM05D003850 ORTHO05D004515 2.5e-178 629.4 547 72.0
vmacro15772 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 9.7e-178 627.5 556 72.8
SGA_v2.0_scaffold4G01878 Striga asiatica HOM05D003850 ORTHO05D004515 6.9e-176 621.3 529 74.1
Cpa.g.sc75.120 Carica papaya HOM05D003850 ORTHO05D004515 2.2e-174 616.3 542 73.4
arahy.Tifrunner.gnm1.ann1.0C9QHL Arachis hypogaea HOM05D003850 ORTHO05D004515 4.6e-172 608.6 556 70.3
COL.COLO4_31876 Corchorus olitorius HOM05D003850 ORTHO05D004515 4.6e-172 608.6 553 68.2
arahy.Tifrunner.gnm1.ann1.97WSNQ Arachis hypogaea HOM05D003850 ORTHO05D004515 7.9e-172 607.8 555 68.1
Medtr2g025590 Medicago truncatula HOM05D003850 ORTHO05D004515 1.8e-171 606.7 542 72.1
Glyma.15G114200 Glycine max HOM05D003850 ORTHO05D004515 5.1e-171 605.1 543 67.8
Nitab4.5_0000143g0310 Nicotiana tabacum HOM05D003850 ORTHO05D004515 2.0e-170 603.2 529 71.8
TWI63G0294 Tripterygium wilfordii HOM05D003850 ORTHO05D004515 4.8e-169 598.6 513 73.9
AL6G47570 Arabidopsis lyrata HOM05D003850 ORTHO05D004515 1.8e-168 596.7 550 70.9
ECA233G3046 Erigeron canadensis HOM05D003850 ORTHO05D004515 6.9e-168 594.7 550 70.4
Solyc11g012150.3 Solanum lycopersicum HOM05D003850 ORTHO05D004515 6.9e-168 594.7 504 72.6
Sabra16G0017100 Salix brachista HOM05D003850 ORTHO05D004515 1.2e-167 594.0 574 64.6
PGSC0003DMG400013344 Solanum tuberosum HOM05D003850 ORTHO05D004515 7.7e-167 591.3 504 72.4
ATR0751G086 Amborella trichopoda HOM05D003850 ORTHO05D004515 1.7e-166 590.1 549 67.6
Lj2A262G45 Lonicera japonica HOM05D003850 ORTHO05D004515 5.5e-165 585.1 514 73.2
PSO302G0165 Papaver somniferum HOM05D003850 ORTHO05D004515 6.1e-164 581.6 545 67.5
Peaxi162Scf00558g00516 Petunia axillaris HOM05D003850 ORTHO05D004515 3.9e-163 578.9 487 75.2
HPP92_001629 Vanilla planifolia HOM05D003850 ORTHO05D004515 3.9e-163 578.9 546 62.6
FAN25G3770 Fragaria x ananassa HOM05D003850 ORTHO05D004515 9.7e-162 574.3 587 61.7
Sabra16G0000900 Salix brachista HOM05D003850 ORTHO05D004515 9.7e-162 574.3 551 60.8
SEGI_18521 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 1.7e-161 573.5 553 65.1
Aa31LG9G10040 Aethionema arabicum HOM05D003850 ORTHO05D004515 4.8e-161 572.0 568 67.8
Actinidia39269 Actinidia chinensis HOM05D003850 ORTHO05D004515 1.4e-160 570.5 359 85.0
AT4G12610 Arabidopsis thaliana HOM05D003850 ORTHO05D004515 3.1e-160 569.3 551 69.7
QL09p006300 Quercus lobata HOM05D003850 ORTHO05D004515 3.1e-160 569.3 362 100.0
Lj4g0025543 Lotus japonicus HOM05D003850 ORTHO05D004515 5.3e-160 568.5 545 65.5
MD10G1331000 Malus domestica HOM05D003850 ORTHO05D004515 2.6e-159 566.2 514 72.0
vmacro03646 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 1.1e-157 560.8 562 60.5
Carub.0006s3188 Capsella rubella HOM05D003850 ORTHO05D004515 3.6e-156 555.8 549 67.2
FvH4_3g01042 Fragaria vesca HOM05D003850 ORTHO05D004515 8.0e-156 554.7 562 62.3
RcHm_v2.0_Chr5g0001581 Rosa chinensis HOM05D003850 ORTHO05D004515 3.3e-154 549.3 563 64.1
SHI24464 Sapria himalayana HOM05D003850 ORTHO05D004515 4.4e-154 548.9 539 62.9
AUR62021872 Chenopodium quinoa HOM05D003850 ORTHO05D004515 7.5e-154 548.1 552 60.1
Lj6g0013016 Lotus japonicus HOM05D003850 ORTHO05D004515 2.2e-153 546.6 547 67.5
CAN.G1186.28 Capsicum annuum HOM05D003850 ORTHO05D004515 9.1e-152 541.2 544 64.2
unitig_748.g7103 Utricularia gibba HOM05D003850 ORTHO05D004515 1.1e-149 534.3 537 62.6
C03p36090 Brassica napus HOM05D003850 ORTHO05D004515 1.5e-149 533.9 548 66.6
BcaC01g04577 Brassica carinata HOM05D003850 ORTHO05D004515 1.9e-149 533.5 550 66.4
BolC3t15918H Brassica oleracea HOM05D003850 ORTHO05D004515 1.9e-149 533.5 550 66.4
HanXRQChr15g0470091 Helianthus annuus HOM05D003850 ORTHO05D004515 2.5e-149 533.1 532 68.4
CARHR253560 Cardamine hirsuta HOM05D003850 ORTHO05D004515 6.1e-148 528.5 546 67.0
A03p29830 Brassica napus HOM05D003850 ORTHO05D004515 1.0e-147 527.7 548 66.1
BraA03t12173Z Brassica rapa HOM05D003850 ORTHO05D004515 3.0e-147 526.2 550 65.3
FAN21G1422 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.5e-146 523.9 580 58.8
Oeu044421.3 Olea europaea HOM05D003850 ORTHO05D004515 2.6e-146 523.1 838 45.7
PSO339G3925 Papaver somniferum HOM05D003850 ORTHO05D004515 9.8e-146 521.2 548 62.6
BcaB01g01757 Brassica carinata HOM05D003850 ORTHO05D004515 1.2e-143 514.2 539 63.6
Thhalv10028564m.g Eutrema salsugineum HOM05D003850 ORTHO05D004515 2.9e-142 509.6 545 65.0
Sp6g04900 Schrenkiella parvula HOM05D003850 ORTHO05D004515 1.5e-141 507.3 548 65.0
MELO3C012788.2 Cucumis melo HOM05D003850 ORTHO05D004515 9.5e-141 504.6 466 70.6
BolC9t56221H Brassica oleracea HOM05D003850 ORTHO05D004515 1.8e-139 500.4 550 62.4
BraA09t38246Z Brassica rapa HOM05D003850 ORTHO05D004515 3.0e-139 499.6 550 61.6
RhsimUnG0109100 Rhododendron simsii HOM05D003850 ORTHO05D004515 3.0e-139 499.6 544 60.3
CDE04G2591 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 8.8e-139 498.0 544 60.1
BcaB01g02623 Brassica carinata HOM05D003850 ORTHO05D004515 2.8e-137 493.0 537 64.1
Hund23984 Selenicereus undatus HOM05D003850 ORTHO05D004515 7.0e-136 488.4 560 61.4
Lsat_1_v5_gn_7_13561 Lactuca sativa HOM05D003850 ORTHO05D004515 5.9e-135 485.3 502 67.7
Zm00001eb224360 Zea mays HOM05D003850 ORTHO05D004515 5.9e-135 485.3 488 66.2
Lj8A171G42 Lonicera japonica HOM05D003850 ORTHO05D004515 1.5e-133 480.7 546 54.0
Rhsim13G0146600 Rhododendron simsii HOM05D003850 ORTHO05D004515 1.0e-131 474.6 598 54.8
EL10Ac8g20176 Beta vulgaris HOM05D003850 ORTHO05D004515 7.5e-130 468.4 551 61.9
A09p26740 Brassica napus HOM05D003850 ORTHO05D004515 7.5e-130 468.4 543 59.1
Psat1g176560 Pisum sativum HOM05D003850 ORTHO05D004515 3.7e-129 466.1 468 67.9
Duzib235G1223 Durio zibethinus HOM05D003850 ORTHO05D004515 4.1e-128 462.6 412 73.3
RcHm_v2.0_Chr5g0007791 Rosa chinensis HOM05D003850 ORTHO05D004515 1.5e-122 444.1 556 56.5
BcaC04g21251 Brassica carinata HOM05D003850 ORTHO05D004515 9.8e-122 441.4 543 58.0
C09p33830 Brassica napus HOM05D003850 ORTHO05D004515 9.8e-122 441.4 543 58.0
Pp3c3_2280 Physcomitrium patens HOM05D003850 ORTHO05D004515 9.8e-122 441.4 555 55.0
Mapoly0105s0015 Marchantia polymorpha HOM05D003850 ORTHO05D004515 9.5e-117 424.9 550 52.0
CDE06G1774 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 1.1e-112 411.4 324 68.2
Zm00001eb398520 Zea mays HOM05D003850 ORTHO05D004515 1.9e-109 400.6 544 47.6
FAN03G2951 Fragaria x ananassa HOM05D003850 ORTHO05D004515 5.6e-109 399.1 553 50.3
Dinv07398 Davidia involucrata HOM05D003850 ORTHO05D004515 7.3e-109 398.7 324 81.2
FAN21G1676 Fragaria x ananassa HOM05D003850 ORTHO05D004515 8.1e-108 395.2 553 50.1
DCAR_025996 Daucus carota HOM05D003850 ORTHO05D004515 1.8e-107 394.0 443 64.6
FAN11G3915 Fragaria x ananassa HOM05D003850 ORTHO05D004515 2.0e-106 390.6 557 49.6
FvH4_3g04782 Fragaria vesca HOM05D003850 ORTHO05D004515 3.4e-106 389.8 557 49.6
FvH4_2g22070 Fragaria vesca HOM05D003850 ORTHO05D004515 4.4e-106 389.4 553 47.6
FAN16G3024 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.4e-104 384.4 557 49.2
FAN24G0125 Fragaria x ananassa HOM05D003850 ORTHO05D008045 1.6e-103 380.9 553 47.4
Medtr2g025620 Medicago truncatula HOM05D003850 ORTHO05D004515 2.7e-103 380.2 518 57.1
AUR62012783 Chenopodium quinoa HOM05D003850 ORTHO05D004515 2.7e-95 353.6 432 56.0
TPR.G34491 Trifolium pratense HOM05D003850 ORTHO05D004515 5.8e-90 335.9 195 82.1
TPR.G13041 Trifolium pratense HOM05D003850 ORTHO05D004515 1.0e-86 325.1 367 69.2
AagrBONN_evm.TU.Sc2ySwM_228.4136 Anthoceros agrestis HOM05D003850 ORTHO05D004515 1.3e-86 324.7 372 54.3
Sc17g0007710 Simmondsia chinensis HOM05D003850 ORTHO05D004515 8.7e-78 295.4 367 64.3
Actinidia11880 Actinidia chinensis HOM05D003850 ORTHO05D004515 5.8e-74 282.7 350 59.1
Peaxi162Scf00015g02110 Petunia axillaris HOM05D003850 ORTHO05D004515 1.1e-72 278.5 312 58.3
SEGI_38016 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 8.2e-68 262.3 333 48.3
FAN25G2646 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.8e-62 244.6 511 39.9
HPP92_001646 Vanilla planifolia HOM05D003850 ORTHO05D004515 3.9e-62 243.4 245 65.3
Gorai.002G145900 Gossypium raimondii HOM05D003850 ORTHO05D004515 9.4e-48 195.7 176 80.7
Lsat_1_v5_gn_5_64561 Lactuca sativa HOM05D003952 ORTHO05D004515 2.1e-39 167.9 181 62.4
HPP92_001645 Vanilla planifolia HOM05D003850 ORTHO05D004515 5.2e-38 163.3 101 73.3
CBR_g38333 Chara braunii HOM05D000019 ORTHO05D000002 3.3e-37 160.6 256 43.4
PSO339G5270 Papaver somniferum HOM05D003850 ORTHO05D004515 9.1e-35 152.5 214 51.4
CDE06G0619 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 4.0e-30 137.1 209 52.2
Gohir.D01G119450 Gossypium hirsutum HOM05D003850 ORTHO05D004515 3.4e-29 134.0 102 81.4
TAR629G2548 Trochodendron aralioides HOM05D003850 ORTHO05D004515 9.8e-29 132.5 314 34.7
PSO384G4333 Papaver somniferum HOM05D003850 ORTHO05D004515 4.1e-27 127.1 175 52.0
RcHm_v2.0_Chr6g0288941 Rosa chinensis HOM05D003850 ORTHO05D004515 2.0e-26 124.8 269 41.3
AagrBONN_evm.TU.Sc2ySwM_228.3786 Anthoceros agrestis HOM05D003850 ORTHO05D004515 2.3e-22 111.3 140 42.9
Lsat_1_v5_gn_3_78300 Lactuca sativa HOM05D002115 ORTHO05D002263 9.2e-19 99.4 56 87.5
AagrBONN_evm.TU.Sc2ySwM_228.3787 Anthoceros agrestis HOM05D003850 ORTHO05D004515 2.0e-18 98.2 242 39.3
SEGI_29277 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 3.5e-18 97.4 209 39.7
FAN21G0780 Fragaria x ananassa HOM05D003850 ORTHO05D004515 5.9e-18 96.7 215 44.7
VMungo0720G0179 Vigna mungo HOM05D003850 ORTHO05D004515 8.6e-17 92.8 51 80.4
Eucgr.A01650 Eucalyptus grandis HOM05D002251 ORTHO05D004515 2.5e-16 91.3 54 68.5
arahy.Tifrunner.gnm1.ann1.5H9H8Z Arachis hypogaea HOM05D003850 ORTHO05D004515 5.6e-16 90.1 109 57.8
HPP92_001647 Vanilla planifolia HOM05D003850 ORTHO05D004515 7.3e-16 89.7 112 53.6
arahy.Tifrunner.gnm1.ann1.N7GRQP Arachis hypogaea HOM05D003850 ORTHO05D004515 1.0e-14 85.9 72 65.3
arahy.Tifrunner.gnm1.ann1.UE8YUV Arachis hypogaea HOM05D003850 ORTHO05D004515 1.0e-14 85.9 72 65.3
arahy.Tifrunner.gnm1.ann1.4A53N1 Arachis hypogaea HOM05D003850 ORTHO05D004515 1.8e-14 85.1 112 56.2
CAN.G1186.27 Capsicum annuum HOM05D001620 ORTHO05D005461 1.7e-12 78.6 59 64.4
SEGI_19210 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 4.6e-10 70.5 130 31.5
Aqoxy1G04111 Aquilegia oxysepala HOM05D004257 ORTHO05D004515 1.3e-09 68.9 104 47.1
arahy.Tifrunner.gnm1.ann1.GFC3N0 Arachis hypogaea HOM05D003850 ORTHO05D004515 1.7e-09 68.6 94 51.1
Nitab4.5_0006771g0010 Nicotiana tabacum HOM05D003850 ORTHO05D004515 2.3e-09 68.2 98 50.0
Nitab4.5_0013082g0020 Nicotiana tabacum HOM05D003850 ORTHO05D004515 1.1e-08 65.9 97 47.4
CARHR253550 Cardamine hirsuta HOM05D003850 ORTHO05D004515 7.3e-08 63.2 65 55.4
Aa31LG9G10030 Aethionema arabicum HOM05D003850 ORTHO05D004515 1.2e-07 62.4 54 63.0
PSO339G0182 Papaver somniferum HOM05D009217 ORTHO05D009626 5.2e-06 57.0 184 35.9


User provided reference genes

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