Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G011300 Prunus persica HOM05D003850 ORTHO05D004515 6.4e-259 897.1 533 100.0
QL05p069776 Quercus lobata HOM05D003850 ORTHO05D004515 6.4e-190 667.9 542 73.6
CANSAT56G0590 Cannabis sativa HOM05D003850 ORTHO05D004515 1.1e-186 657.1 543 73.8
Duzib160G0220 Durio zibethinus HOM05D003850 ORTHO05D004515 3.6e-185 652.1 556 74.5
MD05G1357300 Malus domestica HOM05D003850 ORTHO05D004515 1.4e-181 640.2 546 72.7
arahy.Tifrunner.gnm1.ann1.C17RPB Arachis hypogaea HOM05D003850 ORTHO05D004515 7.0e-181 637.9 542 70.5
Glyma.09G009900 Glycine max HOM05D003850 ORTHO05D004515 9.2e-181 637.5 540 70.9
Ciclev10014841m.g Citrus clementina HOM05D003850 ORTHO05D004515 1.2e-180 637.1 540 70.7
arahy.Tifrunner.gnm1.ann1.IIR6TV Arachis hypogaea HOM05D003850 ORTHO05D004515 6.6e-179 631.3 544 69.9
TAR624G0821 Trochodendron aralioides HOM05D003850 ORTHO05D004515 2.5e-178 629.4 543 71.1
CSS0007684 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 3.3e-178 629.0 545 69.9
CSS0032808 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 5.6e-178 628.2 542 67.7
Thecc.06G232700 Theobroma cacao HOM05D003850 ORTHO05D004515 2.1e-177 626.3 556 71.9
CiPaw.09G102000 Carya illinoinensis HOM05D003850 ORTHO05D004515 3.6e-177 625.5 540 70.4
Nn1g03331 Nelumbo nucifera HOM05D003850 ORTHO05D004515 1.8e-176 623.2 543 68.0
Atru.chr1.2461 Acer truncatum HOM05D003850 ORTHO05D004515 3.1e-176 622.5 542 69.0
Potri.006G009100 Populus trichocarpa HOM05D003850 ORTHO05D004515 3.1e-176 622.5 543 71.6
Ca_00718_v3 Cicer arietinum L. HOM05D003850 ORTHO05D004515 2.0e-175 619.8 545 68.1
Sed0003006 Sechium edule HOM05D003850 ORTHO05D004515 7.5e-175 617.8 541 73.6
Phvul.006G143600 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 1.7e-174 616.7 545 69.4
Manes.07G088900 Manihot esculenta HOM05D003850 ORTHO05D004515 1.6e-172 610.1 533 73.9
CsaV3_3G028740 Cucumis sativus L. HOM05D003850 ORTHO05D004515 4.6e-172 608.6 539 74.0
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 1.7e-171 606.7 539 69.2
VMungo0540G1287 Vigna mungo HOM05D003850 ORTHO05D004515 7.3e-170 601.3 544 68.2
Aqoxy1G04110 Aquilegia oxysepala HOM05D003850 ORTHO05D004515 8.9e-168 594.3 539 66.0
VMungo1215G3075 Vigna mungo HOM05D003850 ORTHO05D004515 3.4e-167 592.4 544 68.9
Eucgr.E03951 Eucalyptus grandis HOM05D003850 ORTHO05D004515 4.2e-165 585.5 546 66.3
GSVIVG01003352001 Vitis vinifera HOM05D003850 ORTHO05D004515 1.2e-164 583.9 544 69.3
TAR629G2665 Trochodendron aralioides HOM05D003850 ORTHO05D004515 7.8e-164 581.3 539 66.0
Lalb_Chr20g0119201 Lupinus albus HOM05D003850 ORTHO05D004515 1.0e-163 580.9 547 64.5
MD10G1331000 Malus domestica HOM05D003850 ORTHO05D004515 1.0e-163 580.9 520 72.5
ClCG07G001740 Citrullus lanatus HOM05D003850 ORTHO05D004515 6.6e-163 578.2 539 70.3
arahy.Tifrunner.gnm1.ann1.97WSNQ Arachis hypogaea HOM05D003850 ORTHO05D004515 1.9e-162 576.6 556 68.0
RhsimUnG0025700 Rhododendron simsii HOM05D003850 ORTHO05D004515 2.5e-162 576.2 590 63.6
RhsimUnG0028500 Rhododendron simsii HOM05D003850 ORTHO05D004515 2.5e-162 576.2 590 63.6
PSO210G4264 Papaver somniferum HOM05D003850 ORTHO05D004515 7.3e-162 574.7 548 67.2
Glyma.15G114200 Glycine max HOM05D003850 ORTHO05D004515 9.6e-162 574.3 542 66.6
Phvul.003G083500 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 1.6e-161 573.5 545 68.8
MSTRG.7170 Avicennia marina HOM05D003850 ORTHO05D004515 3.6e-161 572.4 543 64.5
THA.LOC104812992 Tarenaya hassleriana HOM05D003850 ORTHO05D004515 1.1e-160 570.9 552 63.6
Migut.M01390 Erythranthe guttata HOM05D003850 ORTHO05D004515 5.3e-160 568.5 543 64.3
Cfa000110 Carpinus fangiana HOM05D003850 ORTHO05D004515 1.7e-158 563.5 544 69.7
Sopen11g006940 Solanum pennellii HOM05D003850 ORTHO05D004515 6.4e-158 561.6 540 63.9
Medtr2g025590 Medicago truncatula HOM05D003850 ORTHO05D004515 1.2e-156 557.4 541 66.9
Sabra06G0006900 Salix brachista HOM05D003850 ORTHO05D004515 2.7e-156 556.2 543 64.5
Gorai.010G186300 Gossypium raimondii HOM05D003850 ORTHO05D004515 7.8e-156 554.7 553 66.9
arahy.Tifrunner.gnm1.ann1.0C9QHL Arachis hypogaea HOM05D003850 ORTHO05D004515 2.3e-155 553.1 557 65.0
TPR.G3343 Trifolium pratense HOM05D003850 ORTHO05D004515 2.3e-155 553.1 567 63.3
Oeu002760.2 Olea europaea HOM05D003850 ORTHO05D004515 3.9e-155 552.4 578 64.0
Haze_08659 Corylus avellana HOM05D003850 ORTHO05D004515 5.1e-155 552.0 583 62.3
Nitab4.5_0001198g0010 Nicotiana tabacum HOM05D003850 ORTHO05D004515 7.3e-154 548.1 528 63.4
Cc09_g00920 Coffea canephora HOM05D003850 ORTHO05D004515 9.6e-154 547.7 543 66.1
Gohir.D06G159600 Gossypium hirsutum HOM05D003850 ORTHO05D004515 9.6e-154 547.7 553 66.5
CiPaw.10G077600 Carya illinoinensis HOM05D003850 ORTHO05D004515 1.3e-153 547.4 495 67.3
SalBow8G5272 Salvia bowleyana HOM05D003850 ORTHO05D004515 1.3e-153 547.4 555 63.2
HPP92_001629 Vanilla planifolia HOM05D003850 ORTHO05D004515 1.6e-153 547.0 531 60.6
Potri.016G015100 Populus trichocarpa HOM05D003850 ORTHO05D004515 4.8e-153 545.4 543 65.6
Gohir.A06G153120 Gossypium hirsutum HOM05D003850 ORTHO05D004515 1.4e-152 543.9 553 65.3
MBI16_g42266_MAGBIO Magnolia biondii HOM05D003850 ORTHO05D004515 1.5e-151 540.4 543 62.8
vmacro15772 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 2.0e-151 540.0 556 63.8
FAN25G3770 Fragaria x ananassa HOM05D003850 ORTHO05D004515 6.4e-150 535.0 588 61.4
RcHm_v2.0_Chr5g0001581 Rosa chinensis HOM05D003850 ORTHO05D004515 1.1e-149 534.3 562 66.5
ECA233G3046 Erigeron canadensis HOM05D003850 ORTHO05D004515 2.4e-149 533.1 547 64.5
PGR102G0753 Punica granatum HOM05D003850 ORTHO05D004515 7.1e-149 531.6 543 62.1
ATR0751G086 Amborella trichopoda HOM05D003850 ORTHO05D004515 1.2e-148 530.8 550 60.0
SGA_v2.0_scaffold4G01878 Striga asiatica HOM05D003850 ORTHO05D004515 1.2e-148 530.8 511 67.9
Lj4g0025543 Lotus japonicus HOM05D003850 ORTHO05D004515 7.9e-148 528.1 545 63.3
PSO302G0165 Papaver somniferum HOM05D003850 ORTHO05D004515 1.8e-147 526.9 545 65.0
FvH4_3g01042 Fragaria vesca HOM05D003850 ORTHO05D004515 3.9e-147 525.8 562 61.9
AL6G47570 Arabidopsis lyrata HOM05D003850 ORTHO05D004515 5.1e-147 525.4 552 64.7
Lj6g0013016 Lotus japonicus HOM05D003850 ORTHO05D004515 1.9e-146 523.5 552 65.2
TWI63G0294 Tripterygium wilfordii HOM05D003850 ORTHO05D004515 2.8e-145 519.6 510 68.0
AT4G12610 Arabidopsis thaliana HOM05D003850 ORTHO05D004515 2.6e-143 513.1 557 63.6
Aa31LG9G10040 Aethionema arabicum HOM05D003850 ORTHO05D004515 3.4e-143 512.7 567 62.3
Nitab4.5_0000143g0310 Nicotiana tabacum HOM05D003850 ORTHO05D004515 4.5e-143 512.3 533 61.0
SEGI_18521 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 4.5e-143 512.3 554 58.5
COL.COLO4_31876 Corchorus olitorius HOM05D003850 ORTHO05D004515 7.6e-143 511.5 556 58.8
Sabra16G0017100 Salix brachista HOM05D003850 ORTHO05D004515 3.8e-142 509.2 572 60.3
Cpa.g.sc75.120 Carica papaya HOM05D003850 ORTHO05D004515 4.9e-142 508.8 542 64.4
PGSC0003DMG400013344 Solanum tuberosum HOM05D003850 ORTHO05D004515 4.2e-141 505.8 503 63.4
Solyc11g012150.3 Solanum lycopersicum HOM05D003850 ORTHO05D004515 9.3e-141 504.6 503 63.0
Sabra16G0000900 Salix brachista HOM05D003850 ORTHO05D004515 1.2e-140 504.2 550 57.6
FAN21G1422 Fragaria x ananassa HOM05D003850 ORTHO05D004515 3.3e-138 496.1 580 59.3
Lj2A262G45 Lonicera japonica HOM05D003850 ORTHO05D004515 9.6e-138 494.6 509 61.9
Carub.0006s3188 Capsella rubella HOM05D003850 ORTHO05D004515 4.8e-137 492.3 555 61.6
SHI24464 Sapria himalayana HOM05D003850 ORTHO05D004515 6.2e-137 491.9 534 58.1
unitig_748.g7103 Utricularia gibba HOM05D003850 ORTHO05D004515 1.4e-136 490.7 537 62.6
Actinidia39269 Actinidia chinensis HOM05D003850 ORTHO05D004515 3.1e-136 489.6 359 73.8
HanXRQChr15g0470091 Helianthus annuus HOM05D003850 ORTHO05D004515 3.4e-135 486.1 525 64.8
vmacro03646 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 6.5e-134 481.9 566 54.1
AUR62021872 Chenopodium quinoa HOM05D003850 ORTHO05D004515 1.4e-133 480.7 557 54.0
CAN.G1186.28 Capsicum annuum HOM05D003850 ORTHO05D004515 1.2e-132 477.6 543 59.1
PSO339G3925 Papaver somniferum HOM05D003850 ORTHO05D004515 2.1e-132 476.9 542 60.9
CARHR253560 Cardamine hirsuta HOM05D003850 ORTHO05D004515 3.5e-132 476.1 546 62.3
Peaxi162Scf00558g00516 Petunia axillaris HOM05D003850 ORTHO05D004515 4.6e-132 475.7 484 61.2
BraA03t12173Z Brassica rapa HOM05D003850 ORTHO05D004515 3.9e-131 472.6 549 60.1
BcaC01g04577 Brassica carinata HOM05D003850 ORTHO05D004515 8.7e-131 471.5 549 60.8
BolC3t15918H Brassica oleracea HOM05D003850 ORTHO05D004515 8.7e-131 471.5 549 60.8
C03p36090 Brassica napus HOM05D003850 ORTHO05D004515 1.1e-130 471.1 547 60.9
A03p29830 Brassica napus HOM05D003850 ORTHO05D004515 1.5e-130 470.7 547 60.1
MELO3C012788.2 Cucumis melo HOM05D003850 ORTHO05D004515 7.4e-130 468.4 463 71.7
Sp6g04900 Schrenkiella parvula HOM05D003850 ORTHO05D004515 8.2e-129 464.9 550 60.9
Thhalv10028564m.g Eutrema salsugineum HOM05D003850 ORTHO05D004515 6.9e-128 461.8 547 61.1
CDE04G2591 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 3.8e-126 456.1 553 59.5
Oeu044421.3 Olea europaea HOM05D003850 ORTHO05D004515 1.4e-125 454.1 842 43.5
BcaB01g01757 Brassica carinata HOM05D003850 ORTHO05D004515 2.7e-124 449.9 535 56.4
RhsimUnG0109100 Rhododendron simsii HOM05D003850 ORTHO05D004515 1.4e-123 447.6 534 58.2
Zm00001eb224360 Zea mays HOM05D003850 ORTHO05D004515 2.8e-121 439.9 482 60.4
BolC9t56221H Brassica oleracea HOM05D003850 ORTHO05D004515 1.5e-119 434.1 542 56.1
BcaB01g02623 Brassica carinata HOM05D003850 ORTHO05D004515 5.9e-119 432.2 535 56.1
BraA09t38246Z Brassica rapa HOM05D003850 ORTHO05D004515 3.8e-118 429.5 549 53.6
RcHm_v2.0_Chr5g0007791 Rosa chinensis HOM05D003850 ORTHO05D004515 3.2e-117 426.4 555 53.5
Lsat_1_v5_gn_7_13561 Lactuca sativa HOM05D003850 ORTHO05D004515 4.2e-117 426.0 499 62.5
Hund23984 Selenicereus undatus HOM05D003850 ORTHO05D004515 9.4e-117 424.9 559 57.4
Rhsim13G0146600 Rhododendron simsii HOM05D003850 ORTHO05D004515 4.7e-116 422.5 588 52.9
Lj8A171G42 Lonicera japonica HOM05D003850 ORTHO05D004515 1.4e-115 421.0 544 50.7
Psat1g176560 Pisum sativum HOM05D003850 ORTHO05D004515 2.2e-113 413.7 467 61.2
EL10Ac8g20176 Beta vulgaris HOM05D003850 ORTHO05D004515 4.8e-113 412.5 546 57.1
A09p26740 Brassica napus HOM05D003850 ORTHO05D004515 3.8e-110 402.9 537 53.1
CDE06G1774 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 4.2e-109 399.4 325 66.8
FvH4_2g22070 Fragaria vesca HOM05D003850 ORTHO05D004515 1.1e-106 391.3 547 47.9
Duzib235G1223 Durio zibethinus HOM05D003850 ORTHO05D004515 8.2e-105 385.2 412 68.0
BcaC04g21251 Brassica carinata HOM05D003850 ORTHO05D004515 7.0e-104 382.1 532 51.3
C09p33830 Brassica napus HOM05D003850 ORTHO05D004515 7.0e-104 382.1 532 51.3
FAN24G0125 Fragaria x ananassa HOM05D003850 ORTHO05D008045 2.0e-103 380.6 547 47.3
FAN16G3024 Fragaria x ananassa HOM05D003850 ORTHO05D004515 3.5e-103 379.8 545 48.6
FvH4_3g04782 Fragaria vesca HOM05D003850 ORTHO05D004515 5.9e-103 379.0 545 48.4
Pp3c3_2280 Physcomitrium patens HOM05D003850 ORTHO05D004515 1.3e-102 377.9 557 49.2
Mapoly0105s0015 Marchantia polymorpha HOM05D003850 ORTHO05D004515 2.2e-102 377.1 550 48.0
FAN11G3915 Fragaria x ananassa HOM05D003850 ORTHO05D004515 2.9e-102 376.7 546 48.7
FAN03G2951 Fragaria x ananassa HOM05D003850 ORTHO05D004515 4.2e-101 372.9 534 48.9
FAN21G1676 Fragaria x ananassa HOM05D003850 ORTHO05D004515 4.2e-101 372.9 534 48.9
Zm00001eb398520 Zea mays HOM05D003850 ORTHO05D004515 1.1e-96 358.2 536 45.5
DCAR_025996 Daucus carota HOM05D003850 ORTHO05D004515 7.0e-96 355.5 441 60.1
QL09p006300 Quercus lobata HOM05D003850 ORTHO05D004515 6.5e-94 349.0 363 68.0
Medtr2g025620 Medicago truncatula HOM05D003850 ORTHO05D004515 6.3e-89 332.4 512 51.0
TPR.G34491 Trifolium pratense HOM05D003850 ORTHO05D004515 7.2e-85 318.9 195 75.9
AUR62012783 Chenopodium quinoa HOM05D003850 ORTHO05D004515 4.6e-79 299.7 424 49.8
Dinv07398 Davidia involucrata HOM05D003850 ORTHO05D004515 8.6e-78 295.4 324 65.4
AagrBONN_evm.TU.Sc2ySwM_228.4136 Anthoceros agrestis HOM05D003850 ORTHO05D004515 1.5e-77 294.7 351 47.9
SEGI_38016 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 6.2e-68 262.7 333 49.2
Peaxi162Scf00015g02110 Petunia axillaris HOM05D003850 ORTHO05D004515 2.4e-64 250.8 310 52.9
TPR.G13041 Trifolium pratense HOM05D003850 ORTHO05D004515 3.5e-63 246.9 365 58.1
FAN25G2646 Fragaria x ananassa HOM05D003850 ORTHO05D004515 3.0e-62 243.8 501 40.1
Sc17g0007710 Simmondsia chinensis HOM05D003850 ORTHO05D004515 5.1e-62 243.0 368 58.2
HPP92_001646 Vanilla planifolia HOM05D003850 ORTHO05D004515 3.4e-50 203.8 234 52.1
Actinidia11880 Actinidia chinensis HOM05D003850 ORTHO05D004515 1.2e-47 195.3 277 52.3
HPP92_001645 Vanilla planifolia HOM05D003850 ORTHO05D004515 3.0e-38 164.1 101 75.2
CBR_g38333 Chara braunii HOM05D000019 ORTHO05D000002 9.0e-35 152.5 242 42.6
Lsat_1_v5_gn_5_64561 Lactuca sativa HOM05D003952 ORTHO05D004515 6.4e-33 146.4 165 63.0
Gorai.002G145900 Gossypium raimondii HOM05D003850 ORTHO05D004515 2.7e-31 141.0 175 61.1
RcHm_v2.0_Chr6g0288941 Rosa chinensis HOM05D003850 ORTHO05D004515 3.9e-30 137.1 265 41.5
PSO339G5270 Papaver somniferum HOM05D003850 ORTHO05D004515 2.6e-26 124.4 216 47.7
CDE06G0619 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 6.7e-22 109.8 203 50.2
AagrBONN_evm.TU.Sc2ySwM_228.3786 Anthoceros agrestis HOM05D003850 ORTHO05D004515 6.3e-20 103.2 140 37.9
Gohir.D01G119450 Gossypium hirsutum HOM05D003850 ORTHO05D004515 1.8e-19 101.7 88 72.7
PSO384G4333 Papaver somniferum HOM05D003850 ORTHO05D004515 3.1e-19 100.9 175 49.1
TAR629G2548 Trochodendron aralioides HOM05D003850 ORTHO05D004515 2.6e-18 97.8 312 30.1
Lsat_1_v5_gn_3_78300 Lactuca sativa HOM05D002115 ORTHO05D002263 1.7e-17 95.1 51 90.2
AagrBONN_evm.TU.Sc2ySwM_228.3787 Anthoceros agrestis HOM05D003850 ORTHO05D004515 1.9e-16 91.7 240 36.7
VMungo0720G0179 Vigna mungo HOM05D003850 ORTHO05D004515 1.9e-16 91.7 51 76.5
arahy.Tifrunner.gnm1.ann1.N7GRQP Arachis hypogaea HOM05D003850 ORTHO05D004515 5.5e-16 90.1 72 70.8
arahy.Tifrunner.gnm1.ann1.UE8YUV Arachis hypogaea HOM05D003850 ORTHO05D004515 5.5e-16 90.1 72 70.8
arahy.Tifrunner.gnm1.ann1.5H9H8Z Arachis hypogaea HOM05D003850 ORTHO05D004515 6.1e-15 86.7 121 52.9
HPP92_001647 Vanilla planifolia HOM05D003850 ORTHO05D004515 1.3e-14 85.5 99 59.6
arahy.Tifrunner.gnm1.ann1.4A53N1 Arachis hypogaea HOM05D003850 ORTHO05D004515 1.8e-14 85.1 113 57.5
Eucgr.A01650 Eucalyptus grandis HOM05D002251 ORTHO05D004515 8.7e-14 82.8 54 63.0
SEGI_29277 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 8.7e-14 82.8 208 37.5
CAN.G1186.27 Capsicum annuum HOM05D001620 ORTHO05D005461 2.2e-12 78.2 59 62.7
Nitab4.5_0013082g0020 Nicotiana tabacum HOM05D003850 ORTHO05D004515 2.6e-10 71.2 92 47.8
FAN21G0780 Fragaria x ananassa HOM05D003850 ORTHO05D004515 3.4e-10 70.9 210 39.0
arahy.Tifrunner.gnm1.ann1.GFC3N0 Arachis hypogaea HOM05D003850 ORTHO05D004515 2.2e-09 68.2 94 51.1
CARHR253550 Cardamine hirsuta HOM05D003850 ORTHO05D004515 1.1e-08 65.9 64 56.2
SEGI_19210 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 4.2e-08 63.9 130 27.7
Aqoxy1G04111 Aquilegia oxysepala HOM05D004257 ORTHO05D004515 5.5e-08 63.5 75 46.7
Nitab4.5_0006771g0010 Nicotiana tabacum HOM05D003850 ORTHO05D004515 9.4e-08 62.8 102 44.1
Aa31LG9G10030 Aethionema arabicum HOM05D003850 ORTHO05D004515 2.1e-07 61.6 54 57.4


User provided reference genes

Program Settings