Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G237200 Prunus persica HOM05D002849 ORTHO05D007186 1.3e-70 269.6 133 100.0
CiPaw.08G071100 Carya illinoinensis HOM05D002849 ORTHO05D007186 1.4e-37 159.8 83 91.6
MD08G1004800 Malus domestica HOM05D002849 ORTHO05D007186 1.4e-37 159.8 83 91.6
MD15G1004300 Malus domestica HOM05D002849 ORTHO05D007186 1.4e-37 159.8 83 91.6
Potri.005G083500 Populus trichocarpa HOM05D002849 ORTHO05D007186 1.4e-37 159.8 83 91.6
Prupe.1G356900 Prunus persica HOM05D002849 ORTHO05D007186 1.4e-37 159.8 83 91.6
EL10Ac2g04301 Beta vulgaris HOM05D002849 ORTHO05D007186 1.8e-37 159.5 83 90.4
QL02p013578 Quercus lobata HOM05D002849 ORTHO05D007186 1.8e-37 159.5 83 90.4
Hund05132 Selenicereus undatus HOM05D002849 ORTHO05D007186 1.8e-37 159.5 83 90.4
GSVIVG01008705001 Vitis vinifera HOM05D002849 ORTHO05D007186 1.8e-37 159.5 83 90.4
Aqoxy6G01855 Aquilegia oxysepala HOM05D002849 ORTHO05D007186 2.4e-37 159.1 83 89.2
AT2G44270 Arabidopsis thaliana HOM05D002849 ORTHO05D007186 2.4e-37 159.1 83 89.2
AUR62013834 Chenopodium quinoa HOM05D002849 ORTHO05D007186 2.4e-37 159.1 83 89.2
AUR62036771 Chenopodium quinoa HOM05D002849 ORTHO05D007186 2.4e-37 159.1 83 89.2
COL.COLO4_21615 Corchorus olitorius HOM05D002849 ORTHO05D007186 2.4e-37 159.1 83 90.4
Duzib093G2127 Durio zibethinus HOM05D002849 ORTHO05D007186 2.4e-37 159.1 83 90.4
Gohir.A05G181300 Gossypium hirsutum HOM05D002849 ORTHO05D007186 2.4e-37 159.1 83 90.4
Gohir.D05G184300 Gossypium hirsutum HOM05D002849 ORTHO05D007186 2.4e-37 159.1 83 90.4
Gorai.009G189800 Gossypium raimondii HOM05D002849 ORTHO05D007186 2.4e-37 159.1 83 90.4
PSO541G1452 Papaver somniferum HOM05D002849 ORTHO05D007186 2.4e-37 159.1 83 89.2
PSO675G6932 Papaver somniferum HOM05D002849 ORTHO05D007186 2.4e-37 159.1 83 89.2
Thecc.08G055100 Theobroma cacao HOM05D002849 ORTHO05D007186 2.4e-37 159.1 83 90.4
Aa31LG1G25890 Aethionema arabicum HOM05D002849 ORTHO05D007186 3.1e-37 158.7 83 89.2
Lsat_1_v5_gn_3_7661 Lactuca sativa HOM05D002849 ORTHO05D007186 3.1e-37 158.7 83 89.2
Atru.chr13.175_Atru.chr13.176 Acer truncatum HOM05D002849 ORTHO05D007186 4.1e-37 158.3 83 89.2
ClCG08G013910 Citrullus lanatus HOM05D002849 ORTHO05D007186 4.1e-37 158.3 83 90.4
Cc10_g00890 Coffea canephora HOM05D002849 ORTHO05D007186 4.1e-37 158.3 83 89.2
PGR083G0750 Punica granatum HOM05D002849 ORTHO05D007186 4.1e-37 158.3 83 89.2
Sc02g0008960 Simmondsia chinensis HOM05D002849 ORTHO05D007186 4.1e-37 158.3 83 89.2
unitig_744.g24607 Utricularia gibba HOM05D002849 ORTHO05D007186 4.1e-37 158.3 83 89.2
AL2G36230 Arabidopsis lyrata HOM05D002849 ORTHO05D007186 5.3e-37 157.9 83 89.2
Dinv39573 Davidia involucrata HOM05D002849 ORTHO05D007186 5.3e-37 157.9 83 89.2
Eucgr.F03540 Eucalyptus grandis HOM05D002849 ORTHO05D007186 5.3e-37 157.9 83 89.2
HanXRQChr17g0533361 Helianthus annuus HOM05D002849 ORTHO05D007186 5.3e-37 157.9 83 88.0
Manes.08G142100 Manihot esculenta HOM05D002849 ORTHO05D007186 5.3e-37 157.9 83 90.4
TWI56G0831 Tripterygium wilfordii HOM05D002849 ORTHO05D007186 5.3e-37 157.9 100 78.0
AL4G43230 Arabidopsis lyrata HOM05D002849 ORTHO05D007186 7.0e-37 157.5 83 88.0
Carub.0004s2686 Capsella rubella HOM05D002849 ORTHO05D007186 7.0e-37 157.5 83 88.0
Cfa014032 Carpinus fangiana HOM05D002849 ORTHO05D007186 7.0e-37 157.5 83 90.4
Haze_22739 Corylus avellana HOM05D002849 ORTHO05D007186 7.0e-37 157.5 83 90.4
DCAR_016752 Daucus carota HOM05D002022 ORTHO05D002056 7.0e-37 157.5 83 88.0
FvH4_2g37771 Fragaria vesca HOM05D002849 ORTHO05D007186 7.0e-37 157.5 83 89.2
FAN27G2060 Fragaria x ananassa HOM05D002849 ORTHO05D007186 7.0e-37 157.5 83 89.2
RcHm_v2.0_Chr6g0303961 Rosa chinensis HOM05D002849 ORTHO05D007186 7.0e-37 157.5 83 89.2
Hma1.2p1_1100F.1_g257100 Hydrangea macrophylla HOM05D002849 ORTHO05D007186 9.1e-37 157.1 83 88.0
Nn6g31840 Nelumbo nucifera HOM05D002849 ORTHO05D007186 9.1e-37 157.1 83 89.2
THA.LOC104811452 Tarenaya hassleriana HOM05D002849 ORTHO05D007186 9.1e-37 157.1 83 88.0
TAR376G0763 Trochodendron aralioides HOM05D002849 ORTHO05D007186 9.1e-37 157.1 83 88.0
MELO3C011328.2 Cucumis melo HOM05D002849 ORTHO05D007186 1.2e-36 156.8 83 89.2
CsaV3_2G024550 Cucumis sativus L. HOM05D000201 ORTHO05D000490 1.2e-36 156.8 83 89.2
FAN20G1564 Fragaria x ananassa HOM05D002849 ORTHO05D007186 1.2e-36 156.8 83 89.2
Oeu046334.1 Olea europaea HOM05D002849 ORTHO05D007186 1.2e-36 156.8 83 88.0
Carub.0002s2306 Capsella rubella HOM05D002849 ORTHO05D007186 2.0e-36 156.0 83 86.7
vmacro21838 Vaccinium macrocarpon HOM05D002849 ORTHO05D007186 2.0e-36 156.0 83 86.7
CARHR069720 Cardamine hirsuta HOM05D002849 ORTHO05D007186 2.6e-36 155.6 83 86.7
Ciclev10001644m.g Citrus clementina HOM05D002849 ORTHO05D007186 3.5e-36 155.2 83 86.7
Lj4A14T52 Lonicera japonica HOM05D002849 ORTHO05D007186 3.5e-36 155.2 83 86.7
MBI08_g35553_MAGBIO Magnolia biondii HOM05D002849 ORTHO05D007186 3.5e-36 155.2 83 88.0
CSS0035799 Camellia sinensis var. sinensis HOM05D002849 ORTHO05D007186 4.5e-36 154.8 83 85.5
Sed0011348 Sechium edule HOM05D002849 ORTHO05D007186 4.5e-36 154.8 83 88.0
Zm00001eb255730 Zea mays HOM05D002849 ORTHO05D007186 4.5e-36 154.8 83 88.0
SGA_v2.0_scaffold19G08599 Striga asiatica HOM05D002849 ORTHO05D007186 5.9e-36 154.5 83 85.5
ATR0661G072 Amborella trichopoda HOM05D002849 ORTHO05D007186 7.7e-36 154.1 83 86.7
BolC4t22158H Brassica oleracea HOM05D002849 ORTHO05D007186 7.7e-36 154.1 96 74.0
CARHR139450 Cardamine hirsuta HOM05D002849 ORTHO05D007186 7.7e-36 154.1 83 86.7
Cfa017767 Carpinus fangiana HOM05D002849 ORTHO05D007186 7.7e-36 154.1 83 89.2
Migut.N03194 Erythranthe guttata HOM05D002849 ORTHO05D007186 7.7e-36 154.1 83 86.7
Thhalv10018770m.g Eutrema salsugineum HOM05D002849 ORTHO05D007186 7.7e-36 154.1 83 85.5
Solyc08g074590.2 Solanum lycopersicum HOM05D002849 ORTHO05D007186 7.7e-36 154.1 83 85.5
Sopen08g023190 Solanum pennellii HOM05D002849 ORTHO05D007186 7.7e-36 154.1 83 85.5
HPP92_024207 Vanilla planifolia HOM05D002849 ORTHO05D007186 7.7e-36 154.1 83 86.7
A07p41740 Brassica napus HOM05D002849 ORTHO05D007186 1.3e-35 153.3 83 84.3
BcaC08g47111 Brassica carinata HOM05D002849 ORTHO05D007186 1.7e-35 152.9 83 84.3
BcaNung06602 Brassica carinata HOM05D002849 ORTHO05D007186 1.7e-35 152.9 83 84.3
A05p04470 Brassica napus HOM05D002849 ORTHO05D007186 1.7e-35 152.9 83 84.3
C04p05180 Brassica napus HOM05D002849 ORTHO05D007186 1.7e-35 152.9 83 84.3
C06p50120 Brassica napus HOM05D002849 ORTHO05D007186 1.7e-35 152.9 83 84.3
BraA05t19423Z Brassica rapa HOM05D002849 ORTHO05D007186 1.7e-35 152.9 83 84.3
Sp4g26340 Schrenkiella parvula HOM05D002849 ORTHO05D007186 1.7e-35 152.9 83 84.3
BraA07t31703Z Brassica rapa HOM05D002849 ORTHO05D007186 3.8e-35 151.8 88 78.4
Sp5g31310 Schrenkiella parvula HOM05D002849 ORTHO05D007186 3.8e-35 151.8 83 83.1
CANSAT11G2551 Cannabis sativa HOM05D002849 ORTHO05D007186 5.0e-35 151.4 83 84.3
ECA246G5259 Erigeron canadensis HOM05D002849 ORTHO05D007186 5.0e-35 151.4 83 84.3
BcaB02g08806 Brassica carinata HOM05D002849 ORTHO05D007186 8.5e-35 150.6 83 83.1
Os02g0762300 Oryza sativa ssp. japonica HOM05D002849 ORTHO05D007186 8.5e-35 150.6 83 86.7
SHI05854 Sapria himalayana HOM05D002849 ORTHO05D007186 1.5e-34 149.8 76 88.2
Os01g0598900 Oryza sativa ssp. japonica HOM05D002849 ORTHO05D007186 4.2e-34 148.3 83 84.3
Ca_15284_v3 Cicer arietinum L. HOM05D002849 ORTHO05D007186 5.5e-34 147.9 109 69.7
Ca_15420_v3 Cicer arietinum L. HOM05D002849 ORTHO05D007186 5.5e-34 147.9 109 69.7
Rhsim06G0009600 Rhododendron simsii HOM05D002849 ORTHO05D007186 9.4e-34 147.1 98 74.5
Glyma.04G002200 Glycine max HOM05D002849 ORTHO05D007186 1.6e-33 146.4 83 81.9
Medtr3g118250 Medicago truncatula HOM05D002849 ORTHO05D007186 2.7e-33 145.6 100 73.0
SMO118G0346 Selaginella moellendorffii HOM05D002849 ORTHO05D007186 8.0e-33 144.1 83 77.1
AagrBONN_evm.TU.Sc2ySwM_344.4630 Anthoceros agrestis HOM05D002849 ORTHO05D007186 2.3e-32 142.5 83 79.5
Lalb_Chr23g0264921 Lupinus albus HOM05D002849 ORTHO05D007186 5.2e-32 141.4 83 77.1
HPP92_024246 Vanilla planifolia HOM05D002849 ORTHO05D007186 6.8e-32 141.0 85 76.5
Cre16.g666100 Chlamydomonas reinhardtii HOM05D002849 ORTHO05D007186 1.2e-31 140.2 83 75.9
Lj1g0000302 Lotus japonicus HOM05D002849 ORTHO05D007186 2.0e-31 139.4 83 77.1
Mapoly0148s0040 Marchantia polymorpha HOM05D002849 ORTHO05D007186 2.0e-31 139.4 83 73.5
arahy.Tifrunner.gnm1.ann1.D80FKX Arachis hypogaea HOM05D002849 ORTHO05D007186 5.7e-31 137.9 83 77.1
arahy.Tifrunner.gnm1.ann1.ID8SUW Arachis hypogaea HOM05D002849 ORTHO05D007186 5.7e-31 137.9 83 77.1
Pp3c27_3320 Physcomitrium patens HOM05D002849 ORTHO05D007186 5.7e-31 137.9 83 75.9
TAR628G0269 Trochodendron aralioides HOM05D002849 ORTHO05D007186 1.3e-30 136.7 83 81.9
Peaxi162Scf00166g00641 Petunia axillaris HOM05D002849 ORTHO05D007186 2.8e-30 135.6 83 78.3
Phvul.009G117600 Phaseolus vulgaris HOM05D002849 ORTHO05D007186 3.7e-30 135.2 83 74.7
VMungo1309G1771 Vigna mungo HOM05D002849 ORTHO05D007186 3.7e-30 135.2 83 74.7
Nitab4.5_0001131g0060 Nicotiana tabacum HOM05D002849 ORTHO05D007186 1.1e-29 133.7 83 77.1
CBR_g55299 Chara braunii HOM05D002849 ORTHO05D007186 1.4e-29 133.3 83 72.3
Nitab4.5_0000907g0040 Nicotiana tabacum HOM05D002849 ORTHO05D007186 5.3e-29 131.3 83 75.9
PRCOL_00001104 Prasinoderma coloniale HOM05D002849 ORTHO05D007186 1.0e-27 127.1 83 69.9
Haze_27194 Corylus avellana HOM05D002849 ORTHO05D007186 5.0e-27 124.8 83 65.1
Cfa027047 Carpinus fangiana HOM05D002849 ORTHO05D007186 9.4e-26 120.6 84 64.3
TPR.G36468 Trifolium pratense HOM05D002849 ORTHO05D007186 1.6e-25 119.8 66 84.8
FAN08G3136 Fragaria x ananassa HOM05D002849 ORTHO05D007186 8.0e-25 117.5 70 85.7
BcaC08g47284 Brassica carinata HOM05D002849 ORTHO05D007186 1.2e-20 103.6 55 85.5
BolC6t40052H Brassica oleracea HOM05D002849 ORTHO05D007186 1.2e-20 103.6 55 85.5
Peaxi162Scf00445g00105 Petunia axillaris HOM05D002849 ORTHO05D007186 1.2e-17 93.6 74 63.5
Ah.01g004180 Amaranthus hybridus HOM05D002849 ORTHO05D007186 5.7e-15 84.7 41 95.1
SpUn0523_0010 Schrenkiella parvula HOM05D002849 ORTHO05D007186 4.9e-14 81.6 41 90.2
AT1G76170 Arabidopsis thaliana HOM05D002849 ORTHO05D007186 3.2e-13 79.0 43 81.4
AL7G13010 Arabidopsis lyrata HOM05D002849 ORTHO05D007186 1.6e-09 66.6 34 79.4
BcaB01g01492 Brassica carinata HOM05D002849 ORTHO05D027174 3.1e-08 62.4 37 78.4
VMungo1309G1925 Vigna mungo HOM05D002849 ORTHO05D007186 3.1e-08 62.4 34 85.3


User provided reference genes

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