Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G356900 Prunus persica HOM05D002849 ORTHO05D007186 9.2e-209 729.9 358 100.0
FvH4_2g37771 Fragaria vesca HOM05D002849 ORTHO05D007186 2.3e-196 688.7 358 94.1
MD08G1004800 Malus domestica HOM05D002849 ORTHO05D007186 6.8e-196 687.2 358 94.1
Manes.08G142100 Manihot esculenta HOM05D002849 ORTHO05D007186 1.5e-195 686.0 358 92.5
Thecc.08G055100 Theobroma cacao HOM05D002849 ORTHO05D007186 1.5e-195 686.0 354 93.8
Duzib093G2127 Durio zibethinus HOM05D002849 ORTHO05D007186 4.9e-194 681.0 354 93.2
CiPaw.08G071100 Carya illinoinensis HOM05D002849 ORTHO05D007186 4.1e-193 677.9 357 92.4
Gohir.A05G181300 Gossypium hirsutum HOM05D002849 ORTHO05D007186 1.6e-192 676.0 354 92.1
Gohir.D05G184300 Gossypium hirsutum HOM05D002849 ORTHO05D007186 2.7e-192 675.2 354 92.1
Gorai.009G189800 Gossypium raimondii HOM05D002849 ORTHO05D007186 2.7e-192 675.2 354 92.1
TWI56G0831 Tripterygium wilfordii HOM05D002849 ORTHO05D007186 6.0e-192 674.1 354 91.0
Atru.chr13.175_Atru.chr13.176 Acer truncatum HOM05D002849 ORTHO05D007186 1.0e-191 673.3 361 91.1
Potri.005G083500 Populus trichocarpa HOM05D002849 ORTHO05D007186 2.3e-191 672.2 349 93.1
Ciclev10001644m.g Citrus clementina HOM05D002849 ORTHO05D007186 6.2e-189 664.1 356 90.4
CSS0035799 Camellia sinensis var. sinensis HOM05D002849 ORTHO05D007186 1.8e-188 662.5 358 89.9
CANSAT11G2551 Cannabis sativa HOM05D002849 ORTHO05D007186 1.8e-188 662.5 358 88.8
PGR083G0750 Punica granatum HOM05D002849 ORTHO05D007186 4.0e-188 661.4 357 89.4
Aqoxy6G01855 Aquilegia oxysepala HOM05D002849 ORTHO05D007186 8.9e-188 660.2 356 89.6
Dinv39573 Davidia involucrata HOM05D002849 ORTHO05D007186 2.0e-187 659.1 360 89.7
Sc02g0008960 Simmondsia chinensis HOM05D002849 ORTHO05D007186 4.4e-187 657.9 358 88.8
Eucgr.F03540 Eucalyptus grandis HOM05D002849 ORTHO05D007186 9.8e-187 656.8 358 89.4
MELO3C011328.2 Cucumis melo HOM05D002849 ORTHO05D007186 1.3e-186 656.4 358 89.4
Hund05132 Selenicereus undatus HOM05D002849 ORTHO05D007186 1.7e-186 656.0 358 88.0
GSVIVG01008705001 Vitis vinifera HOM05D002849 ORTHO05D007186 2.9e-186 655.2 368 87.5
Carub.0004s2686 Capsella rubella HOM05D002849 ORTHO05D007186 1.1e-185 653.3 355 88.7
TAR376G0763 Trochodendron aralioides HOM05D002849 ORTHO05D007186 2.4e-185 652.1 357 88.8
AL2G36230 Arabidopsis lyrata HOM05D002849 ORTHO05D007186 4.1e-185 651.4 357 88.8
THA.LOC104811452 Tarenaya hassleriana HOM05D002849 ORTHO05D007186 7.1e-185 650.6 357 88.2
Carub.0002s2306 Capsella rubella HOM05D002849 ORTHO05D007186 9.2e-185 650.2 359 87.2
AL4G43230 Arabidopsis lyrata HOM05D002849 ORTHO05D007186 1.2e-184 649.8 355 88.7
Sp4g26340 Schrenkiella parvula HOM05D002849 ORTHO05D007186 1.2e-184 649.8 357 87.4
Nn6g31840 Nelumbo nucifera HOM05D002849 ORTHO05D007186 1.6e-184 649.4 351 90.0
PSO541G1452 Papaver somniferum HOM05D002849 ORTHO05D007186 1.6e-184 649.4 357 88.0
AT2G44270 Arabidopsis thaliana HOM05D002849 ORTHO05D007186 2.1e-184 649.0 355 88.7
PSO675G6932 Papaver somniferum HOM05D002849 ORTHO05D007186 2.1e-184 649.0 357 87.7
Cc10_g00890 Coffea canephora HOM05D002849 ORTHO05D007186 3.5e-184 648.3 356 88.2
Sed0011348 Sechium edule HOM05D002849 ORTHO05D007186 3.5e-184 648.3 360 88.1
Migut.N03194 Erythranthe guttata HOM05D002849 ORTHO05D007186 4.6e-184 647.9 356 87.1
FAN27G2060 Fragaria x ananassa HOM05D002849 ORTHO05D007186 2.3e-183 645.6 358 89.4
Thhalv10018770m.g Eutrema salsugineum HOM05D002849 ORTHO05D007186 3.9e-183 644.8 358 87.2
CARHR069720 Cardamine hirsuta HOM05D002849 ORTHO05D007186 5.1e-183 644.4 358 87.7
FAN20G1564 Fragaria x ananassa HOM05D002849 ORTHO05D007186 5.1e-183 644.4 358 89.1
ClCG08G013910 Citrullus lanatus HOM05D002849 ORTHO05D007186 1.6e-181 639.4 359 88.3
QL02p013578 Quercus lobata HOM05D002849 ORTHO05D007186 2.1e-181 639.0 387 82.4
A05p04470 Brassica napus HOM05D002849 ORTHO05D007186 2.3e-180 635.6 371 83.6
BraA05t19423Z Brassica rapa HOM05D002849 ORTHO05D007186 3.4e-179 631.7 381 81.4
Aa31LG1G25890 Aethionema arabicum HOM05D002849 ORTHO05D007186 4.4e-179 631.3 357 86.3
Cfa017767 Carpinus fangiana HOM05D002849 ORTHO05D007186 5.8e-179 630.9 332 92.8
vmacro21838 Vaccinium macrocarpon HOM05D002849 ORTHO05D007186 4.9e-178 627.9 414 76.6
Glyma.04G002200 Glycine max HOM05D002849 ORTHO05D007186 1.1e-177 626.7 353 85.3
Rhsim06G0009600 Rhododendron simsii HOM05D002849 ORTHO05D007186 5.4e-177 624.4 406 78.1
C04p05180 Brassica napus HOM05D002849 ORTHO05D007186 1.6e-176 622.9 364 83.5
Lsat_1_v5_gn_3_7661 Lactuca sativa HOM05D002849 ORTHO05D007186 3.0e-175 618.6 349 86.5
Oeu046334.1 Olea europaea HOM05D002849 ORTHO05D007186 5.1e-175 617.8 335 89.3
BolC4t22158H Brassica oleracea HOM05D002849 ORTHO05D007186 6.6e-175 617.5 393 78.6
Ca_15284_v3 Cicer arietinum L. HOM05D002849 ORTHO05D007186 1.1e-174 616.7 352 83.8
Ca_15420_v3 Cicer arietinum L. HOM05D002849 ORTHO05D007186 1.1e-174 616.7 352 83.8
ECA246G5259 Erigeron canadensis HOM05D002849 ORTHO05D007186 4.3e-174 614.8 323 90.4
Medtr3g118250 Medicago truncatula HOM05D002849 ORTHO05D007186 5.6e-174 614.4 348 85.1
Lj1g0000302 Lotus japonicus HOM05D002849 ORTHO05D007186 3.6e-173 611.7 354 83.6
Haze_22739 Corylus avellana HOM05D002849 ORTHO05D007186 1.1e-172 610.1 374 82.9
BraA07t31703Z Brassica rapa HOM05D002849 ORTHO05D007186 1.8e-172 609.4 377 80.4
Os02g0762300 Oryza sativa ssp. japonica HOM05D002849 ORTHO05D007186 4.0e-172 608.2 365 82.2
BcaB02g08806 Brassica carinata HOM05D002849 ORTHO05D007186 3.4e-171 605.1 359 83.0
Zm00001eb255730 Zea mays HOM05D002849 ORTHO05D007186 3.4e-171 605.1 366 82.2
BcaNung06602 Brassica carinata HOM05D002849 ORTHO05D007186 4.4e-171 604.7 359 82.7
MBI08_g35553_MAGBIO Magnolia biondii HOM05D002849 ORTHO05D007186 3.8e-170 601.7 362 82.0
HPP92_024207 Vanilla planifolia HOM05D002849 ORTHO05D007186 8.4e-170 600.5 359 82.7
Phvul.009G117600 Phaseolus vulgaris HOM05D002849 ORTHO05D007186 1.4e-169 599.7 356 80.1
CsaV3_2G024550 Cucumis sativus L. HOM05D000201 ORTHO05D000490 4.6e-168 594.7 357 83.5
Hma1.2p1_1100F.1_g257100 Hydrangea macrophylla HOM05D002849 ORTHO05D007186 1.7e-167 592.8 356 82.3
Nitab4.5_0001131g0060 Nicotiana tabacum HOM05D002849 ORTHO05D007186 9.6e-166 587.0 366 80.1
arahy.Tifrunner.gnm1.ann1.ID8SUW Arachis hypogaea HOM05D002849 ORTHO05D007186 6.2e-165 584.3 349 81.9
Lj4A14T52 Lonicera japonica HOM05D002849 ORTHO05D007186 2.0e-163 579.3 413 71.9
C06p50120 Brassica napus HOM05D002849 ORTHO05D007186 1.4e-161 573.2 356 80.1
unitig_744.g24607 Utricularia gibba HOM05D002849 ORTHO05D007186 7.1e-161 570.9 350 80.9
Os01g0598900 Oryza sativa ssp. japonica HOM05D002849 ORTHO05D007186 9.3e-161 570.5 326 85.0
SGA_v2.0_scaffold19G08599 Striga asiatica HOM05D002849 ORTHO05D007186 1.3e-159 566.6 443 66.8
A07p41740 Brassica napus HOM05D002849 ORTHO05D007186 1.8e-159 566.2 311 86.8
BcaC08g47111 Brassica carinata HOM05D002849 ORTHO05D007186 1.1e-158 563.5 369 76.7
Cfa014032 Carpinus fangiana HOM05D002849 ORTHO05D007186 2.5e-158 562.4 331 84.9
MD15G1004300 Malus domestica HOM05D002849 ORTHO05D007186 5.6e-158 561.2 371 77.9
DCAR_016752 Daucus carota HOM05D002022 ORTHO05D002056 1.8e-156 556.2 320 85.0
COL.COLO4_21615 Corchorus olitorius HOM05D002849 ORTHO05D007186 9.0e-156 553.9 354 80.5
Sp5g31310 Schrenkiella parvula HOM05D002849 ORTHO05D007186 3.8e-154 548.5 358 77.4
SMO118G0346 Selaginella moellendorffii HOM05D002849 ORTHO05D007186 4.2e-153 545.0 336 75.3
Mapoly0148s0040 Marchantia polymorpha HOM05D002849 ORTHO05D007186 2.1e-152 542.7 344 74.7
EL10Ac2g04301 Beta vulgaris HOM05D002849 ORTHO05D007186 2.3e-151 539.3 356 76.7
Pp3c27_3320 Physcomitrium patens HOM05D002849 ORTHO05D007186 3.9e-151 538.5 315 79.7
Lalb_Chr23g0264921 Lupinus albus HOM05D002849 ORTHO05D007186 4.3e-150 535.0 392 69.6
BolC6t40052H Brassica oleracea HOM05D002849 ORTHO05D007186 3.2e-145 518.8 359 74.1
VMungo1309G1771 Vigna mungo HOM05D002849 ORTHO05D007186 1.2e-144 516.9 356 71.6
BcaC08g47284 Brassica carinata HOM05D002849 ORTHO05D007186 2.5e-142 509.2 360 73.1
arahy.Tifrunner.gnm1.ann1.D80FKX Arachis hypogaea HOM05D002849 ORTHO05D007186 5.7e-142 508.1 349 73.6
CBR_g55299 Chara braunii HOM05D002849 ORTHO05D007186 8.2e-141 504.2 319 72.7
Cre16.g666100 Chlamydomonas reinhardtii HOM05D002849 ORTHO05D007186 2.1e-136 489.6 305 74.4
TPR.G36468 Trifolium pratense HOM05D002849 ORTHO05D007186 1.2e-131 473.8 293 78.5
AUR62013834 Chenopodium quinoa HOM05D002849 ORTHO05D007186 5.9e-131 471.5 358 67.9
AagrBONN_evm.TU.Sc2ySwM_344.4630 Anthoceros agrestis HOM05D002849 ORTHO05D007186 3.2e-129 465.7 259 84.6
RcHm_v2.0_Chr6g0303961 Rosa chinensis HOM05D002849 ORTHO05D007186 3.1e-124 449.1 231 94.4
SHI05854 Sapria himalayana HOM05D002849 ORTHO05D007186 3.4e-123 445.7 318 69.8
Cpa.g.sc26.233 Carica papaya HOM05D002849 ORTHO05D007186 7.7e-123 444.5 349 68.2
AT1G76170 Arabidopsis thaliana HOM05D002849 ORTHO05D007186 1.3e-122 443.7 238 89.5
Haze_27194 Corylus avellana HOM05D002849 ORTHO05D007186 4.2e-121 438.7 324 62.7
PRCOL_00001104 Prasinoderma coloniale HOM05D002849 ORTHO05D007186 5.7e-118 428.3 340 62.1
AUR62036771 Chenopodium quinoa HOM05D002849 ORTHO05D007186 2.8e-117 426.0 321 68.5
HanXRQChr17g0533361 Helianthus annuus HOM05D002849 ORTHO05D007186 2.4e-116 422.9 222 90.5
Solyc08g074590.2 Solanum lycopersicum HOM05D002849 ORTHO05D007186 7.0e-116 421.4 226 88.9
Sopen08g023190 Solanum pennellii HOM05D002849 ORTHO05D007186 7.0e-116 421.4 226 88.9
HPP92_024246 Vanilla planifolia HOM05D002849 ORTHO05D007186 2.2e-114 416.4 239 84.9
CARHR139450 Cardamine hirsuta HOM05D002849 ORTHO05D007186 1.6e-112 410.2 214 91.1
Nitab4.5_0000907g0040 Nicotiana tabacum HOM05D002849 ORTHO05D007186 2.1e-112 409.8 351 63.8
ATR0661G072 Amborella trichopoda HOM05D002849 ORTHO05D007186 2.3e-111 406.4 227 86.3
Peaxi162Scf00166g00641 Petunia axillaris HOM05D002849 ORTHO05D007186 2.4e-108 396.4 222 86.0
TAR628G0269 Trochodendron aralioides HOM05D002849 ORTHO05D007186 1.6e-104 383.6 230 83.0
Cfa027047 Carpinus fangiana HOM05D002849 ORTHO05D007186 5.9e-99 365.2 444 45.9
Ah.01g004180 Amaranthus hybridus HOM05D002849 ORTHO05D007186 2.3e-82 310.1 223 70.4
Psat5g001160 Pisum sativum HOM05D002849 ORTHO05D007186 2.8e-72 276.6 195 72.8
Lj9A176T24 Lonicera japonica HOM05D002849 ORTHO05D007186 2.1e-64 250.4 211 63.0
Peaxi162Scf00445g00105 Petunia axillaris HOM05D002849 ORTHO05D007186 1.7e-61 240.7 350 42.9
VMungo1309G1925 Vigna mungo HOM05D002849 ORTHO05D007186 6.0e-59 232.3 269 50.9
CARHR139440 Cardamine hirsuta HOM05D002849 ORTHO05D007186 7.8e-59 231.9 129 86.0
Peaxi162Scf00166g00633 Petunia axillaris HOM05D002849 ORTHO05D007186 2.3e-50 203.8 114 83.3
HanXRQChr17g0533371 Helianthus annuus HOM05D002849 ORTHO05D007186 5.1e-50 202.6 117 82.1
ATR0661G077 Amborella trichopoda HOM05D002849 ORTHO05D007186 1.2e-46 191.4 122 74.6
RcHm_v2.0_Chr6g0303951 Rosa chinensis HOM05D002849 ORTHO05D007186 8.7e-42 175.3 94 86.2
SalBow6G3808 Salvia bowleyana HOM05D002849 ORTHO05D007186 2.1e-40 170.6 101 80.2
Prupe.3G237200 Prunus persica HOM05D002849 ORTHO05D007186 2.2e-37 160.6 83 91.6
SpUn0523_0010 Schrenkiella parvula HOM05D002849 ORTHO05D007186 3.0e-34 150.2 120 65.8
FAN08G3136 Fragaria x ananassa HOM05D002849 ORTHO05D007186 4.9e-29 132.9 77 88.3
MELO3C004787.2 Cucumis melo HOM05D002849 ORTHO05D007186 4.6e-27 126.3 95 68.4
Gorai.007G371200 Gossypium raimondii HOM05D002849 ORTHO05D047384 2.2e-24 117.5 69 81.2
MELO3C012882.2 Cucumis melo HOM05D002849 ORTHO05D007186 4.8e-24 116.3 77 72.7
Gohir.D11G341150 Gossypium hirsutum HOM05D002849 ORTHO05D047384 3.1e-23 113.6 74 77.0
MELO3C034170.2 Cucumis melo HOM05D002849 ORTHO05D007186 3.9e-18 96.7 57 75.4
MELO3C003855.2 Cucumis melo HOM05D002849 ORTHO05D007186 7.4e-17 92.4 60 73.3
C05p45940 Brassica napus HOM05D002849 ORTHO05D024297 2.9e-13 80.5 93 51.6
TAR276G0001 Trochodendron aralioides HOM05D002849 ORTHO05D051491 8.5e-13 79.0 54 74.1
BolC5t33314H Brassica oleracea HOM05D002849 ORTHO05D024297 1.9e-12 77.8 77 54.5
AL7G13010 Arabidopsis lyrata HOM05D002849 ORTHO05D007186 1.5e-09 68.2 34 82.4
Actinidia17029 Actinidia chinensis HOM05D000148 ORTHO05D000081 2.0e-09 67.8 31 93.5
BcaB01g01492 Brassica carinata HOM05D002849 ORTHO05D027174 7.4e-09 65.9 44 70.5
PRCOL_00007051 Prasinoderma coloniale HOM05D002604 ORTHO05D003070 2.4e-07 60.8 191 26.7
A05p30360 Brassica napus HOM05D002849 ORTHO05D024297 4.1e-07 60.1 38 73.7
BraA05t21874Z Brassica rapa HOM05D002849 ORTHO05D024297 4.1e-07 60.1 38 73.7


User provided reference genes

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