Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G284000 Prunus persica HOM05D003015 ORTHO05D003733 1.1e-68 263.1 129 100.0
Prupe.1G283900 Prunus persica HOM05D003015 ORTHO05D009073 2.7e-54 215.3 126 86.5
MD16G1006600 Malus domestica HOM05D003015 ORTHO05D003733 7.7e-33 144.1 120 61.7
FAN12G3049 Fragaria x ananassa HOM05D003015 ORTHO05D003733 1.1e-31 140.2 122 63.1
FvH4_4g36530 Fragaria vesca HOM05D003015 ORTHO05D003733 1.9e-31 139.4 122 63.1
FAN22G2074 Fragaria x ananassa HOM05D003015 ORTHO05D003733 2.5e-31 139.0 122 62.3
Prupe.8G143100 Prunus persica HOM05D003015 ORTHO05D003733 2.5e-31 139.0 120 60.8
RcHm_v2.0_Chr4g0408701 Rosa chinensis HOM05D003015 ORTHO05D003733 3.2e-31 138.7 122 61.5
Prupe.2G214800 Prunus persica HOM05D003015 ORTHO05D003733 9.5e-31 137.1 120 60.0
FAN17G3087 Fragaria x ananassa HOM05D003015 ORTHO05D003733 1.6e-30 136.3 122 62.3
MD07G1175800 Malus domestica HOM05D003015 ORTHO05D003733 2.3e-29 132.5 120 59.2
RcHm_v2.0_Chr4g0446281 Rosa chinensis HOM05D003015 ORTHO05D003733 8.8e-29 130.6 121 58.7
Haze_24240 Corylus avellana HOM05D003015 ORTHO05D003733 2.0e-28 129.4 122 57.4
Cfa011635 Carpinus fangiana HOM05D003015 ORTHO05D003733 3.4e-28 128.6 122 57.4
TWI31G1171 Tripterygium wilfordii HOM05D003015 ORTHO05D003733 7.5e-28 127.5 124 57.3
QL01p027360 Quercus lobata HOM05D003015 ORTHO05D003733 9.8e-28 127.1 125 56.8
CiPaw.05G153000 Carya illinoinensis HOM05D003015 ORTHO05D003733 1.7e-27 126.3 125 56.0
TWI75G0619 Tripterygium wilfordii HOM05D003015 ORTHO05D003733 1.7e-27 126.3 124 56.5
MELO3C004123.2 Cucumis melo HOM05D003015 ORTHO05D003733 3.7e-27 125.2 125 54.4
CsaV3_2G007640 Cucumis sativus L. HOM05D003015 ORTHO05D003733 3.7e-27 125.2 125 54.4
Nn3g19364 Nelumbo nucifera HOM05D003015 ORTHO05D003733 3.7e-27 125.2 127 55.9
CSS0018492 Camellia sinensis var. sinensis HOM05D003015 ORTHO05D003733 8.3e-27 124.0 126 54.8
CSS0039767 Camellia sinensis var. sinensis HOM05D003015 ORTHO05D003733 8.3e-27 124.0 126 54.8
Duzib147G1171 Durio zibethinus HOM05D003015 ORTHO05D003733 8.3e-27 124.0 127 55.1
MD01G1110000 Malus domestica HOM05D003015 ORTHO05D003733 8.3e-27 124.0 120 56.7
ClCG02G014360 Citrullus lanatus HOM05D003015 ORTHO05D003733 1.8e-26 122.9 125 53.6
TAR402G0004 Trochodendron aralioides HOM05D003015 ORTHO05D003733 2.4e-26 122.5 126 54.8
Eucgr.J01948 Eucalyptus grandis HOM05D003015 ORTHO05D003733 4.1e-26 121.7 125 56.0
CANSAT35G0599 Cannabis sativa HOM05D003015 ORTHO05D003733 5.4e-26 121.3 122 59.0
PSO339G6468 Papaver somniferum HOM05D003015 ORTHO05D003733 1.2e-25 120.2 127 55.9
Potri.009G041400 Populus trichocarpa HOM05D003015 ORTHO05D003733 1.2e-25 120.2 125 54.4
Potri.009G041600 Populus trichocarpa HOM05D003015 ORTHO05D003733 1.2e-25 120.2 125 54.4
CiPaw.14G062400 Carya illinoinensis HOM05D003015 ORTHO05D003733 1.6e-25 119.8 126 55.6
Sabra09G0029300 Salix brachista HOM05D003015 ORTHO05D003733 1.6e-25 119.8 125 53.6
Duzib264G0696 Durio zibethinus HOM05D003015 ORTHO05D003733 2.0e-25 119.4 127 53.5
Gohir.D03G029400 Gossypium hirsutum HOM05D003015 ORTHO05D003733 2.7e-25 119.0 127 52.8
Gorai.003G031000 Gossypium raimondii HOM05D003015 ORTHO05D003733 2.7e-25 119.0 127 52.8
Cc02_g23110 Coffea canephora HOM05D003015 ORTHO05D003733 3.5e-25 118.6 126 55.6
Gohir.A02G151000 Gossypium hirsutum HOM05D003015 ORTHO05D003733 3.5e-25 118.6 127 52.8
PSO384G4602 Papaver somniferum HOM05D003015 ORTHO05D003733 5.9e-25 117.9 127 55.1
Sabra09G0029100 Salix brachista HOM05D003015 ORTHO05D003733 5.9e-25 117.9 125 52.8
Thecc.01G073800 Theobroma cacao HOM05D003015 ORTHO05D003733 5.9e-25 117.9 127 52.8
Oeu049810.1 Olea europaea HOM05D003015 ORTHO05D003733 1.3e-24 116.7 126 52.4
Sed0025661 Sechium edule HOM05D003015 ORTHO05D003733 1.3e-24 116.7 127 53.5
Peaxi162Scf00130g01131 Petunia axillaris HOM05D003015 ORTHO05D003733 1.7e-24 116.3 128 53.9
FAN17G0963 Fragaria x ananassa HOM05D003015 ORTHO05D003733 2.9e-24 115.5 122 54.1
FAN22G0757 Fragaria x ananassa HOM05D003015 ORTHO05D003733 2.9e-24 115.5 122 54.1
Oeu045924.1 Olea europaea HOM05D003015 ORTHO05D003733 2.9e-24 115.5 126 51.6
Ah.04g164350 Amaranthus hybridus HOM05D003015 ORTHO05D003733 5.0e-24 114.8 127 52.8
Nitab4.5_0000244g0050 Nicotiana tabacum HOM05D003015 ORTHO05D003733 5.0e-24 114.8 126 54.0
MSTRG.27859 Avicennia marina HOM05D003015 ORTHO05D003733 6.6e-24 114.4 125 50.4
MSTRG.5211 Avicennia marina HOM05D003015 ORTHO05D003733 6.6e-24 114.4 126 50.8
VMungo0540G1143 Vigna mungo HOM05D003015 ORTHO05D003733 6.6e-24 114.4 121 55.4
EL10Ac4g08321 Beta vulgaris HOM05D003015 ORTHO05D003733 8.6e-24 114.0 127 52.8
FvH4_4g11590 Fragaria vesca HOM05D003015 ORTHO05D003733 8.6e-24 114.0 122 54.1
FAN07G1978 Fragaria x ananassa HOM05D003015 ORTHO05D003733 8.6e-24 114.0 122 53.3
FAN12G3854 Fragaria x ananassa HOM05D003015 ORTHO05D003733 8.6e-24 114.0 122 54.1
TAR636G2105 Trochodendron aralioides HOM05D003015 ORTHO05D003733 8.6e-24 114.0 126 53.2
Nitab4.5_0005031g0010 Nicotiana tabacum HOM05D003015 ORTHO05D003733 1.5e-23 113.2 126 51.6
Nitab4.5_0012695g0010 Nicotiana tabacum HOM05D003015 ORTHO05D003733 1.9e-23 112.8 126 53.2
Nitab4.5_0001618g0050 Nicotiana tabacum HOM05D003015 ORTHO05D003733 3.3e-23 112.1 126 50.8
Phvul.L002537 Phaseolus vulgaris HOM05D003015 ORTHO05D003733 3.3e-23 112.1 121 54.5
AUR62041065 Chenopodium quinoa HOM05D003015 ORTHO05D003733 7.3e-23 110.9 126 50.0
Lj5A264T26 Lonicera japonica HOM05D003015 ORTHO05D003733 9.5e-23 110.5 128 51.6
Solyc10g079190.3 Solanum lycopersicum HOM05D003015 ORTHO05D003733 1.2e-22 110.2 126 51.6
Sopen10g029840 Solanum pennellii HOM05D003015 ORTHO05D003733 1.2e-22 110.2 126 51.6
PGSC0003DMG400008145 Solanum tuberosum HOM05D003015 ORTHO05D003733 1.2e-22 110.2 126 51.6
Lj6g0027942 Lotus japonicus HOM05D003015 ORTHO05D003733 2.1e-22 109.4 121 54.5
Solyc04g017710.3 Solanum lycopersicum HOM05D003015 ORTHO05D003733 2.1e-22 109.4 127 51.2
Sopen04g008800 Solanum pennellii HOM05D003015 ORTHO05D003733 2.1e-22 109.4 127 51.2
DCAR_006673 Daucus carota HOM05D003015 ORTHO05D003733 2.8e-22 109.0 129 51.2
Ciclev10028282m.g Citrus clementina HOM05D003015 ORTHO05D003733 3.6e-22 108.6 125 49.6
AUR62037628 Chenopodium quinoa HOM05D003015 ORTHO05D003733 4.7e-22 108.2 126 49.2
Duzib168G1740 Durio zibethinus HOM05D003015 ORTHO05D003733 8.0e-22 107.5 125 52.0
EL10Ac3g06500 Beta vulgaris HOM05D003015 ORTHO05D003733 1.0e-21 107.1 127 49.6
Lsat_1_v5_gn_7_76100 Lactuca sativa HOM05D003015 ORTHO05D003733 1.0e-21 107.1 129 51.2
Lalb_Chr06g0171271 Lupinus albus HOM05D003015 ORTHO05D003733 1.8e-21 106.3 121 52.1
Sc20g0003200 Simmondsia chinensis HOM05D003015 ORTHO05D003733 1.8e-21 106.3 124 52.4
Actinidia38840 Actinidia chinensis HOM05D003015 ORTHO05D003733 2.3e-21 105.9 125 51.2
arahy.Tifrunner.gnm1.ann1.42246I Arachis hypogaea HOM05D003015 ORTHO05D003733 2.3e-21 105.9 121 52.9
Dinv14472 Davidia involucrata HOM05D003015 ORTHO05D003733 2.3e-21 105.9 126 50.8
Os07g0281000 Oryza sativa ssp. japonica HOM05D003015 ORTHO05D003733 5.2e-21 104.8 127 48.0
SHI06627 Sapria himalayana HOM05D003015 ORTHO05D003733 5.2e-21 104.8 128 48.4
SHI07211 Sapria himalayana HOM05D003015 ORTHO05D003733 5.2e-21 104.8 128 48.4
CDE02G0190 Ceratophyllum demersum HOM05D003015 ORTHO05D003733 8.9e-21 104.0 123 48.8
ATR0584G134 Amborella trichopoda HOM05D003015 ORTHO05D003733 1.2e-20 103.6 131 48.1
Glyma.02G303600 Glycine max HOM05D003015 ORTHO05D003733 1.2e-20 103.6 121 51.2
Hma1.2p1_0227F.1_g096180 Hydrangea macrophylla HOM05D003015 ORTHO05D003733 1.2e-20 103.6 127 48.8
COL.COLO4_32624 Corchorus olitorius HOM05D003015 ORTHO05D003733 1.5e-20 103.2 121 52.1
Os06g0170500 Oryza sativa ssp. japonica HOM05D003015 ORTHO05D003733 1.5e-20 103.2 127 48.0
Phvul.008G282900 Phaseolus vulgaris HOM05D003015 ORTHO05D003733 2.6e-20 102.4 121 50.4
Ca_16230_v3 Cicer arietinum L. HOM05D003015 ORTHO05D003733 4.4e-20 101.7 121 52.1
Glyma.13G076300 Glycine max HOM05D003015 ORTHO05D003733 4.4e-20 101.7 121 52.1
HanXRQChr11g0338781 Helianthus annuus HOM05D003015 ORTHO05D003733 4.4e-20 101.7 126 49.2
Lj2A1075T34 Lonicera japonica HOM05D003015 ORTHO05D003733 4.4e-20 101.7 128 48.4
CDE04G0464 Ceratophyllum demersum HOM05D003015 ORTHO05D003733 7.5e-20 100.9 123 48.8
TPR.G14378 Trifolium pratense HOM05D003015 ORTHO05D003733 7.5e-20 100.9 121 50.4
HanXRQChr01g0027201 Helianthus annuus HOM05D003015 ORTHO05D003733 9.8e-20 100.5 132 45.5
ATR0584G244 Amborella trichopoda HOM05D003015 ORTHO05D003733 1.7e-19 99.8 131 49.6
CSS0005232 Camellia sinensis var. sinensis HOM05D003015 ORTHO05D003733 1.7e-19 99.8 128 46.9
Psat5g112760 Pisum sativum HOM05D003015 ORTHO05D003733 1.7e-19 99.8 120 49.2
Lalb_Chr02g0153531 Lupinus albus HOM05D003015 ORTHO05D003733 2.2e-19 99.4 121 50.4
Zm00001eb375430 Zea mays HOM05D003015 ORTHO05D003733 2.9e-19 99.0 128 48.4
ECA240G0521 Erigeron canadensis HOM05D003015 ORTHO05D003733 3.7e-19 98.6 131 46.6
Glyma.14G010200 Glycine max HOM05D003015 ORTHO05D003733 3.7e-19 98.6 121 49.6
GSVIVG01024807001 Vitis vinifera HOM05D003015 ORTHO05D003733 3.7e-19 98.6 90 61.1
Atru.chr3.4062 Acer truncatum HOM05D003015 ORTHO05D003733 4.9e-19 98.2 125 47.2
Lalb_Chr21g0314561 Lupinus albus HOM05D003015 ORTHO05D003733 4.9e-19 98.2 121 49.6
Aqoxy1G00721 Aquilegia oxysepala HOM05D003015 ORTHO05D003733 1.4e-18 96.7 128 46.9
Manes.02G122600 Manihot esculenta HOM05D003015 ORTHO05D003733 1.4e-18 96.7 125 48.8
Glyma.20G050200 Glycine max HOM05D003015 ORTHO05D003733 1.8e-18 96.3 121 49.6
SGA_v2.0_scaffold42G15905 Striga asiatica HOM05D003015 ORTHO05D003733 1.8e-18 96.3 130 44.6
Manes.01G165200 Manihot esculenta HOM05D003015 ORTHO05D003733 7.0e-18 94.4 126 47.6
SEGI_12275 Sequoiadendron giganteum HOM05D003015 ORTHO05D003733 7.0e-18 94.4 125 45.6
VMungo0647G0404 Vigna mungo HOM05D003015 ORTHO05D003733 7.0e-18 94.4 92 59.8
Medtr3g079200 Medicago truncatula HOM05D003015 ORTHO05D003733 1.2e-17 93.6 121 48.8
Hund12125 Selenicereus undatus HOM05D003015 ORTHO05D003733 1.2e-17 93.6 130 46.2
HPP92_010595 Vanilla planifolia HOM05D003015 ORTHO05D003733 2.7e-17 92.4 131 45.0
Migut.N00830 Erythranthe guttata HOM05D003015 ORTHO05D003733 3.5e-17 92.0 123 46.3
CARHR204790 Cardamine hirsuta HOM05D003015 ORTHO05D003733 4.6e-17 91.7 121 43.0
AL1G17510 Arabidopsis lyrata HOM05D003015 ORTHO05D003733 5.9e-17 91.3 115 47.8
COL.COLO4_11589 Corchorus olitorius HOM05D003015 ORTHO05D003733 5.9e-17 91.3 132 41.7
Dinv36322 Davidia involucrata HOM05D003015 ORTHO05D003733 3.9e-16 88.6 127 47.2
unitig_747.g21268 Utricularia gibba HOM05D003015 ORTHO05D003733 3.9e-16 88.6 126 43.7
SGA_v2.0_scaffold8G04438 Striga asiatica HOM05D003015 ORTHO05D003733 1.5e-15 86.7 123 46.3
THA.LOC104826299 Tarenaya hassleriana HOM05D003015 ORTHO05D003733 3.3e-15 85.5 86 57.0
Rhsim13G0073800 Rhododendron simsii HOM05D003015 ORTHO05D003733 4.3e-15 85.1 87 55.2
Lsat_1_v5_gn_9_120400 Lactuca sativa HOM05D003015 ORTHO05D003733 9.5e-15 84.0 123 43.1
Aa31LG1G6670 Aethionema arabicum HOM05D003015 ORTHO05D003733 1.6e-14 83.2 86 53.5
AT1G07360 Arabidopsis thaliana HOM05D003015 ORTHO05D003733 6.2e-14 81.3 82 56.1
CARHR007070 Cardamine hirsuta HOM05D003015 ORTHO05D003733 6.2e-14 81.3 87 51.7
AT2G29580 Arabidopsis thaliana HOM05D003015 ORTHO05D003733 1.8e-13 79.7 118 44.1
vmacro02998 Vaccinium macrocarpon HOM05D003015 ORTHO05D003733 1.8e-13 79.7 87 52.9
Thhalv10016591m.g Eutrema salsugineum HOM05D003015 ORTHO05D003733 2.3e-13 79.3 116 44.0
vmacro06938 Vaccinium macrocarpon HOM05D003015 ORTHO05D003733 2.3e-13 79.3 88 52.3
C08p02980 Brassica napus HOM05D003015 ORTHO05D003733 5.2e-13 78.2 87 50.6
Carub.0001s0666 Capsella rubella HOM05D003015 ORTHO05D003733 5.2e-13 78.2 114 42.1
Pp3c14_6210 Physcomitrium patens HOM05D003015 ORTHO05D003733 6.8e-13 77.8 113 41.6
BcaC02g08076 Brassica carinata HOM05D003015 ORTHO05D003733 8.9e-13 77.4 120 42.5
C04p58700 Brassica napus HOM05D003015 ORTHO05D003733 8.9e-13 77.4 120 42.5
RcHm_v2.0_Chr1g0337351 Rosa chinensis HOM05D003015 ORTHO05D003733 8.9e-13 77.4 121 44.6
THA.LOC104800716 Tarenaya hassleriana HOM05D003015 ORTHO05D003733 8.9e-13 77.4 122 41.0
BcaB03g13399 Brassica carinata HOM05D003015 ORTHO05D003733 1.2e-12 77.0 86 51.2
BolC4t27389H Brassica oleracea HOM05D003015 ORTHO05D003733 1.5e-12 76.6 120 41.7
Pp3c2_11360 Physcomitrium patens HOM05D003015 ORTHO05D003733 2.0e-12 76.3 130 40.8
A08p35690 Brassica napus HOM05D002022 ORTHO05D002056 4.4e-12 75.1 86 50.0
BolC8t47098H Brassica oleracea HOM05D003015 ORTHO05D003733 4.4e-12 75.1 86 50.0
BraA08t35476Z Brassica rapa HOM05D003015 ORTHO05D003733 4.4e-12 75.1 86 50.0
Sp1g06110 Schrenkiella parvula HOM05D003015 ORTHO05D003733 4.4e-12 75.1 84 52.4
Sp4g12310 Schrenkiella parvula HOM05D003015 ORTHO05D003733 4.4e-12 75.1 119 42.9
DCAR_019355 Daucus carota HOM05D003015 ORTHO05D003733 5.8e-12 74.7 108 45.4
AL4G24300 Arabidopsis lyrata HOM05D003015 ORTHO05D003733 7.5e-12 74.3 118 42.4
Migut.N00829 Erythranthe guttata HOM05D003015 ORTHO05D003733 9.8e-12 73.9 120 41.7
AagrBONN_evm.TU.Sc2ySwM_117.2733 Anthoceros agrestis HOM05D003015 ORTHO05D003733 1.3e-11 73.6 92 46.7
Mapoly0103s0034 Marchantia polymorpha HOM05D003015 ORTHO05D003733 8.3e-11 70.9 90 46.7
Pp3c14_6200 Physcomitrium patens HOM05D003015 ORTHO05D003733 1.4e-10 70.1 95 43.2
COL.COLO4_19088 Corchorus olitorius HOM05D003015 ORTHO05D003733 9.2e-10 67.4 49 67.3
PSO832G4426 Papaver somniferum HOM05D003015 ORTHO05D003733 1.2e-09 67.0 108 45.4
BolC9t59952H Brassica oleracea HOM05D003015 ORTHO05D003733 6.0e-09 64.7 120 35.8
BcaB06g28319 Brassica carinata HOM05D003015 ORTHO05D003733 1.0e-08 63.9 49 65.3
BraA04t17800Z Brassica rapa HOM05D003015 ORTHO05D003733 1.0e-08 63.9 49 65.3
PSO063G2829 Papaver somniferum HOM05D003015 ORTHO05D003733 1.0e-08 63.9 108 42.6
Nitab4.5_0000082g0440 Nicotiana tabacum HOM05D003015 ORTHO05D003733 2.3e-08 62.8 110 40.0
FvH4_7g07370 Fragaria vesca HOM05D003015 ORTHO05D003733 3.0e-08 62.4 121 38.0
A04p22550 Brassica napus HOM05D003015 ORTHO05D003733 3.9e-08 62.0 49 63.3
FAN10G3991 Fragaria x ananassa HOM05D003015 ORTHO05D003733 5.6e-07 58.2 122 35.2
SMO239G0105 Selaginella moellendorffii HOM05D003015 ORTHO05D003733 7.3e-07 57.8 49 59.2
FAN06G0288 Fragaria x ananassa HOM05D003015 ORTHO05D003733 9.5e-07 57.4 120 35.0
BcaC06g32186 Brassica carinata HOM05D003015 ORTHO05D003733 2.8e-06 55.8 110 34.5
BcaB02g10264 Brassica carinata HOM05D003015 ORTHO05D039340 6.2e-06 54.7 110 37.3
CBR_g479 Chara braunii HOM05D003015 ORTHO05D003733 6.2e-06 54.7 48 58.3
Nn2g13601 Nelumbo nucifera HOM05D003015 ORTHO05D003733 8.1e-06 54.3 32 81.2


User provided reference genes

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