Gene: AT1G07360

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G07360
  • Transcript Identifier AT1G07360.1
  • Gene Type Coding gene
  • Location Chr1 : 2260562-2262795 : negative

Gene Family Information

  • ID HOM05D003015
  • #Genes/#Species 229/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G07360.1
  • symbol MAC5A
  • full_name MOS4-associated complex subunit 5A
  • uniprot Q9LNV5

Descriptions

  • Description CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein
  • Computational description CCCH-type zinc fingerfamily protein with RNA-binding domain; FUNCTIONS IN: RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: CCCH-type zinc fingerfamily protein with RNA-binding domain (TAIR:AT2G29580.1); Has 18250 Blast hits to 13471 proteins in 794 species: Archae - 12; Bacteria - 1319; Metazoa - 6997; Fungi - 3518; Plants - 3570; Viruses - 267; Other Eukaryotes - 2567 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0042742
IGI
Gene Ontologydefense response to bacterium1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0036002
IBA
Gene Ontologypre-mRNA binding2
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IEA
InterProRNA binding
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0046872
IEA
InterPrometal ion binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0017070
IBA
Gene OntologyU6 snRNA binding2
GO:0003729
IDA, HDA
Gene OntologymRNA binding3 4
GO:0005515
IPI
Gene Ontologyprotein binding5

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IDA
ISM
Gene Ontologynucleus1
GO:0071006
IBA
Gene OntologyU2-type catalytic step 1 spliceosome2
GO:0071007
IBA
Gene OntologyU2-type catalytic step 2 spliceosome2
GO:0000974
IBA
Gene OntologyPrp19 complex2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000504 RNA recognition motif domain
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 RNA-binding domain superfamily
IPR000571 Zinc finger, CCCH-type
IPR032297 Torus domain
IPR036855 Zinc finger, CCCH-type superfamily
IPR039171 Pre-mRNA-splicing factor Cwc2/Slt11
Mapman id Description
16.2.5.2.1 RNA processing.pre-mRNA splicing.spliceosome-associated non-snRNP MOS4-associated complex (MAC).associated components.component MAC5