Gene: Thecc.01G073800

General Information

Structural Information

  • Species Theobroma cacao
  • Gene Identifier Thecc.01G073800
  • Transcript Identifier Thecc.01G073800.1
  • Gene Type Coding gene
  • Location Chromosome_1 : 3648432-3651739 : positive

Gene Family Information

  • ID HOM05D003015
  • #Genes/#Species 229/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id Thecc.01G073800.v2.1
  • pacid 42019147
  • ancestorIdentifier Thecc1EG000813.CGDv1.1
  • ancestorIdentifier Thecc1EG000813t1.CGDv1.1

Descriptions

  • Description CCCH-type zinc fingerfamily protein with RNA-binding domain
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0042742
ISO
PLAZA Integrative Orthologydefense response to bacterium AT1G07360

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0003723
IEA
InterProRNA binding
GO:0046872
IEA
InterPrometal ion binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT2G29580
GO:0000976
ISO
PLAZA Integrative Orthologytranscription cis-regulatory region binding AT5G07060
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT2G29580

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT1G07360

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR000504 RNA recognition motif domain
IPR032297 Torus domain
IPR039171 Pre-mRNA-splicing factor Cwc2/Slt11
IPR000571 Zinc finger, CCCH-type
IPR036855 Zinc finger, CCCH-type superfamily
IPR035979 RNA-binding domain superfamily
Mapman id Description
16.2.5.2.1 RNA processing.pre-mRNA splicing.spliceosome-associated non-snRNP MOS4-associated complex (MAC).associated components.component MAC5