Gene: Solyc04g017710.3

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc04g017710.3
  • Transcript Identifier Solyc04g017710.3.1
  • Gene Type Coding gene
  • Location SL4.0ch04 : 7832827-7837614 : positive

Gene Family Information

  • ID HOM05D003015
  • #Genes/#Species 229/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc04g017710.3.1
  • uniprot A0A3Q7GSY6
  • gene_id Solyc04g017710

Descriptions

  • Description Zinc finger transcription factor 32
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0042742
ISO
PLAZA Integrative Orthologydefense response to bacterium AT1G07360

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT2G29580
GO:0000976
ISO
PLAZA Integrative Orthologytranscription cis-regulatory region binding AT5G07060
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT2G29580
GO:0017070
IBA
GOA DatabaseU6 snRNA binding
GO:0036002
IBA
GOA Databasepre-mRNA binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0046872
IEA
InterPrometal ion binding
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IEA
InterProRNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0071006
IBA
GOA DatabaseU2-type catalytic step 1 spliceosome
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT1G07360
GO:0000974
IBA
GOA DatabasePrp19 complex
GO:0071007
IBA
GOA DatabaseU2-type catalytic step 2 spliceosome

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000504 RNA recognition motif domain
IPR039171 Pre-mRNA-splicing factor Cwc2/Slt11
IPR035979 RNA-binding domain superfamily
IPR036855 Zinc finger, CCCH-type superfamily
IPR032297 Torus domain
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR000571 Zinc finger, CCCH-type
Mapman id Description
16.2.5.2.1 RNA processing.pre-mRNA splicing.spliceosome-associated non-snRNP MOS4-associated complex (MAC).associated components.component MAC5