Gene: AT2G29580

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT2G29580
  • Transcript Identifier AT2G29580.1
  • Gene Type Coding gene
  • Location Chr2 : 12652011-12654158 : positive

Gene Family Information

  • ID HOM05D003015
  • #Genes/#Species 229/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT2G29580.1
  • symbol MAC5B
  • full_name MOS4-associated complex subunit 5B
  • uniprot Q9ZW36

Descriptions

  • Description CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein
  • Computational description CCCH-type zinc fingerfamily protein with RNA-binding domain; FUNCTIONS IN: RNA binding, zinc ion binding, nucleotide binding, nucleic acid binding; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: C globular stage, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: CCCH-type zinc fingerfamily protein with RNA-binding domain (TAIR:AT1G07360.1); Has 12789 Blast hits to 10406 proteins in 530 species: Archae - 8; Bacteria - 415; Metazoa - 5528; Fungi - 2943; Plants - 2628; Viruses - 129; Other Eukaryotes - 1138 (source: NCBI BLink).
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Functional Annotation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IPI
Gene Ontologyprotein binding1
GO:0003729
IDA
Gene OntologymRNA binding2
GO:0017070
IBA
Gene OntologyU6 snRNA binding3
GO:0036002
IBA
Gene Ontologypre-mRNA binding3
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0046872
IEA
InterPrometal ion binding
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IEA
InterProRNA binding
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISM
Gene Ontologynucleus
GO:0071006
IBA
Gene OntologyU2-type catalytic step 1 spliceosome3
GO:0000974
IBA
Gene OntologyPrp19 complex3
GO:0071007
IBA
Gene OntologyU2-type catalytic step 2 spliceosome3

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000504 RNA recognition motif domain
IPR035979 RNA-binding domain superfamily
IPR032297 Torus domain
IPR036855 Zinc finger, CCCH-type superfamily
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR039171 Pre-mRNA-splicing factor Cwc2/Slt11
IPR000571 Zinc finger, CCCH-type
Mapman id Description
16.2.5.2.1 RNA processing.pre-mRNA splicing.spliceosome-associated non-snRNP MOS4-associated complex (MAC).associated components.component MAC5