Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c27_3320 Physcomitrium patens HOM05D002849 ORTHO05D007186 4.7e-202 707.6 349 100.0
Mapoly0148s0040 Marchantia polymorpha HOM05D002849 ORTHO05D007186 4.4e-155 551.6 349 76.2
Dinv39573 Davidia involucrata HOM05D002849 ORTHO05D007186 6.9e-153 544.3 335 76.7
SMO118G0346 Selaginella moellendorffii HOM05D002849 ORTHO05D007186 1.0e-151 540.4 324 79.6
Aqoxy6G01855 Aquilegia oxysepala HOM05D002849 ORTHO05D007186 1.3e-151 540.0 335 76.4
Gohir.A05G181300 Gossypium hirsutum HOM05D002849 ORTHO05D007186 1.7e-151 539.7 340 76.2
FvH4_2g37771 Fragaria vesca HOM05D002849 ORTHO05D007186 2.9e-151 538.9 315 79.7
Thecc.08G055100 Theobroma cacao HOM05D002849 ORTHO05D007186 8.5e-151 537.3 347 74.4
Prupe.1G356900 Prunus persica HOM05D002849 ORTHO05D007186 1.1e-150 537.0 315 79.7
Migut.N03194 Erythranthe guttata HOM05D002849 ORTHO05D007186 1.4e-150 536.6 315 79.7
Manes.08G142100 Manihot esculenta HOM05D002849 ORTHO05D007186 1.4e-150 536.6 316 80.1
Gohir.D05G184300 Gossypium hirsutum HOM05D002849 ORTHO05D007186 1.9e-150 536.2 340 75.6
Gorai.009G189800 Gossypium raimondii HOM05D002849 ORTHO05D007186 1.9e-150 536.2 340 75.6
MELO3C011328.2 Cucumis melo HOM05D002849 ORTHO05D007186 3.2e-150 535.4 345 74.5
Medtr3g118250 Medicago truncatula HOM05D002849 ORTHO05D007186 3.2e-150 535.4 348 74.7
ECA246G5259 Erigeron canadensis HOM05D002849 ORTHO05D007186 4.2e-150 535.0 313 79.6
Duzib093G2127 Durio zibethinus HOM05D002849 ORTHO05D007186 5.5e-150 534.6 347 74.1
Hund05132 Selenicereus undatus HOM05D002849 ORTHO05D007186 7.2e-150 534.3 315 78.4
Sc02g0008960 Simmondsia chinensis HOM05D002849 ORTHO05D007186 7.2e-150 534.3 334 74.9
Carub.0002s2306 Capsella rubella HOM05D002849 ORTHO05D007186 1.6e-149 533.1 347 74.1
CiPaw.08G071100 Carya illinoinensis HOM05D002849 ORTHO05D007186 1.6e-149 533.1 315 79.0
GSVIVG01008705001 Vitis vinifera HOM05D002849 ORTHO05D007186 1.6e-149 533.1 335 75.8
AL4G43230 Arabidopsis lyrata HOM05D002849 ORTHO05D007186 2.1e-149 532.7 347 74.4
PSO675G6932 Papaver somniferum HOM05D002849 ORTHO05D007186 2.1e-149 532.7 332 75.9
AT2G44270 Arabidopsis thaliana HOM05D002849 ORTHO05D007186 2.7e-149 532.3 347 74.4
CSS0035799 Camellia sinensis var. sinensis HOM05D002849 ORTHO05D007186 3.6e-149 531.9 330 75.8
CANSAT11G2551 Cannabis sativa HOM05D002849 ORTHO05D007186 4.7e-149 531.6 347 74.1
TAR376G0763 Trochodendron aralioides HOM05D002849 ORTHO05D007186 4.7e-149 531.6 348 73.0
Carub.0004s2686 Capsella rubella HOM05D002849 ORTHO05D007186 6.1e-149 531.2 349 74.8
PSO541G1452 Papaver somniferum HOM05D002849 ORTHO05D007186 6.1e-149 531.2 332 75.9
PGR083G0750 Punica granatum HOM05D002849 ORTHO05D007186 7.9e-149 530.8 315 78.4
AL2G36230 Arabidopsis lyrata HOM05D002849 ORTHO05D007186 1.4e-148 530.0 317 78.5
TWI56G0831 Tripterygium wilfordii HOM05D002849 ORTHO05D007186 1.4e-148 530.0 315 79.0
CARHR069720 Cardamine hirsuta HOM05D002849 ORTHO05D007186 1.8e-148 529.6 350 73.7
Eucgr.F03540 Eucalyptus grandis HOM05D002849 ORTHO05D007186 1.8e-148 529.6 336 75.0
Sp4g26340 Schrenkiella parvula HOM05D002849 ORTHO05D007186 1.8e-148 529.6 347 74.4
Atru.chr13.175_Atru.chr13.176 Acer truncatum HOM05D002849 ORTHO05D007186 2.3e-148 529.3 320 77.8
Potri.005G083500 Populus trichocarpa HOM05D002849 ORTHO05D007186 2.3e-148 529.3 335 74.9
Ca_15284_v3 Cicer arietinum L. HOM05D002849 ORTHO05D007186 3.0e-148 528.9 331 77.0
Ca_15420_v3 Cicer arietinum L. HOM05D002849 ORTHO05D007186 3.0e-148 528.9 331 77.0
Cc10_g00890 Coffea canephora HOM05D002849 ORTHO05D007186 3.9e-148 528.5 336 75.0
Sed0011348 Sechium edule HOM05D002849 ORTHO05D007186 8.8e-148 527.3 312 79.2
Ciclev10001644m.g Citrus clementina HOM05D002849 ORTHO05D007186 1.1e-147 526.9 316 77.2
Nn6g31840 Nelumbo nucifera HOM05D002849 ORTHO05D007186 1.1e-147 526.9 335 74.6
Thhalv10018770m.g Eutrema salsugineum HOM05D002849 ORTHO05D007186 1.5e-147 526.6 330 75.8
Os02g0762300 Oryza sativa ssp. japonica HOM05D002849 ORTHO05D007186 3.3e-147 525.4 352 73.0
THA.LOC104811452 Tarenaya hassleriana HOM05D002849 ORTHO05D007186 9.7e-147 523.9 347 72.6
Lj1g0000302 Lotus japonicus HOM05D002849 ORTHO05D007186 1.3e-146 523.5 332 74.7
Glyma.04G002200 Glycine max HOM05D002849 ORTHO05D007186 6.3e-146 521.2 347 71.5
Zm00001eb255730 Zea mays HOM05D002849 ORTHO05D007186 6.3e-146 521.2 352 71.9
HPP92_024207 Vanilla planifolia HOM05D002849 ORTHO05D007186 8.2e-146 520.8 315 78.1
Cfa017767 Carpinus fangiana HOM05D002849 ORTHO05D007186 3.1e-145 518.8 316 77.5
A05p04470 Brassica napus HOM05D002849 ORTHO05D007186 4.1e-145 518.5 359 71.0
ClCG08G013910 Citrullus lanatus HOM05D002849 ORTHO05D007186 1.2e-144 516.9 346 72.8
MD08G1004800 Malus domestica HOM05D002849 ORTHO05D007186 4.5e-144 515.0 347 71.5
C04p05180 Brassica napus HOM05D002849 ORTHO05D007186 5.9e-144 514.6 345 73.6
BraA05t19423Z Brassica rapa HOM05D002849 ORTHO05D007186 5.9e-144 514.6 369 69.1
Lsat_1_v5_gn_3_7661 Lactuca sativa HOM05D002849 ORTHO05D007186 1.0e-143 513.8 315 77.1
MBI08_g35553_MAGBIO Magnolia biondii HOM05D002849 ORTHO05D007186 1.7e-143 513.1 327 75.5
Aa31LG1G25890 Aethionema arabicum HOM05D002849 ORTHO05D007186 3.2e-142 508.8 315 76.5
BolC4t22158H Brassica oleracea HOM05D002849 ORTHO05D007186 9.4e-142 507.3 374 69.0
Os01g0598900 Oryza sativa ssp. japonica HOM05D002849 ORTHO05D007186 1.2e-141 506.9 331 74.6
Phvul.009G117600 Phaseolus vulgaris HOM05D002849 ORTHO05D007186 2.7e-141 505.8 347 69.5
Rhsim06G0009600 Rhododendron simsii HOM05D002849 ORTHO05D007186 8.0e-141 504.2 363 68.9
BraA07t31703Z Brassica rapa HOM05D002849 ORTHO05D007186 1.8e-140 503.1 363 68.9
Haze_22739 Corylus avellana HOM05D002849 ORTHO05D007186 2.3e-140 502.7 292 81.2
CBR_g55299 Chara braunii HOM05D002849 ORTHO05D007186 2.0e-139 499.6 302 77.2
arahy.Tifrunner.gnm1.ann1.ID8SUW Arachis hypogaea HOM05D002849 ORTHO05D007186 3.3e-139 498.8 330 73.9
FAN20G1564 Fragaria x ananassa HOM05D002849 ORTHO05D007186 3.3e-139 498.8 330 72.7
vmacro21838 Vaccinium macrocarpon HOM05D002849 ORTHO05D007186 3.3e-139 498.8 401 63.1
FAN27G2060 Fragaria x ananassa HOM05D002849 ORTHO05D007186 5.7e-139 498.0 315 74.9
Oeu046334.1 Olea europaea HOM05D002849 ORTHO05D007186 9.7e-139 497.3 303 76.9
unitig_744.g24607 Utricularia gibba HOM05D002849 ORTHO05D007186 3.7e-138 495.4 315 75.2
QL02p013578 Quercus lobata HOM05D002849 ORTHO05D007186 1.8e-137 493.0 346 69.7
BcaNung06602 Brassica carinata HOM05D002849 ORTHO05D007186 9.1e-137 490.7 315 74.9
BcaB02g08806 Brassica carinata HOM05D002849 ORTHO05D007186 1.6e-136 490.0 342 70.5
CsaV3_2G024550 Cucumis sativus L. HOM05D000201 ORTHO05D000490 2.7e-136 489.2 328 72.6
A07p41740 Brassica napus HOM05D002849 ORTHO05D007186 2.2e-135 486.1 297 77.4
Hma1.2p1_1100F.1_g257100 Hydrangea macrophylla HOM05D002849 ORTHO05D007186 2.9e-135 485.7 336 69.9
Cre16.g666100 Chlamydomonas reinhardtii HOM05D002849 ORTHO05D007186 2.1e-133 479.6 306 74.5
C06p50120 Brassica napus HOM05D002849 ORTHO05D007186 2.3e-132 476.1 321 72.3
Nitab4.5_0001131g0060 Nicotiana tabacum HOM05D002849 ORTHO05D007186 2.6e-131 472.6 329 70.2
Lj4A14T52 Lonicera japonica HOM05D002849 ORTHO05D007186 7.5e-131 471.1 370 63.8
DCAR_016752 Daucus carota HOM05D002022 ORTHO05D002056 1.2e-128 463.8 288 76.4
AagrBONN_evm.TU.Sc2ySwM_344.4630 Anthoceros agrestis HOM05D002849 ORTHO05D007186 2.9e-127 459.1 290 79.7
SGA_v2.0_scaffold19G08599 Striga asiatica HOM05D002849 ORTHO05D007186 1.5e-126 456.8 399 59.1
BcaC08g47111 Brassica carinata HOM05D002849 ORTHO05D007186 1.2e-125 453.8 356 64.6
Cfa014032 Carpinus fangiana HOM05D002849 ORTHO05D007186 2.8e-125 452.6 315 69.5
Sp5g31310 Schrenkiella parvula HOM05D002849 ORTHO05D007186 3.1e-121 439.1 347 64.8
arahy.Tifrunner.gnm1.ann1.D80FKX Arachis hypogaea HOM05D002849 ORTHO05D007186 1.0e-119 434.1 330 66.7
Lalb_Chr23g0264921 Lupinus albus HOM05D002849 ORTHO05D007186 1.7e-119 433.3 356 61.8
VMungo1309G1771 Vigna mungo HOM05D002849 ORTHO05D007186 3.8e-119 432.2 347 62.0
Haze_27194 Corylus avellana HOM05D002849 ORTHO05D007186 8.6e-119 431.0 326 61.7
EL10Ac2g04301 Beta vulgaris HOM05D002849 ORTHO05D007186 1.1e-118 430.6 347 64.8
BolC6t40052H Brassica oleracea HOM05D002849 ORTHO05D007186 4.7e-117 425.2 324 66.7
TPR.G36468 Trifolium pratense HOM05D002849 ORTHO05D007186 7.5e-115 417.9 290 70.0
BcaC08g47284 Brassica carinata HOM05D002849 ORTHO05D007186 3.7e-114 415.6 325 65.5
PRCOL_00001104 Prasinoderma coloniale HOM05D002849 ORTHO05D007186 3.7e-114 415.6 353 60.6
COL.COLO4_21615 Corchorus olitorius HOM05D002849 ORTHO05D007186 1.1e-113 414.1 336 63.1
MD15G1004300 Malus domestica HOM05D002849 ORTHO05D007186 1.2e-109 400.6 328 61.3
SHI05854 Sapria himalayana HOM05D002849 ORTHO05D007186 1.0e-103 380.9 314 60.8
HPP92_024246 Vanilla planifolia HOM05D002849 ORTHO05D007186 2.3e-103 379.8 239 77.4
AUR62013834 Chenopodium quinoa HOM05D002849 ORTHO05D007186 1.5e-102 377.1 312 60.9
AT1G76170 Arabidopsis thaliana HOM05D002849 ORTHO05D007186 8.1e-101 371.3 210 81.9
RcHm_v2.0_Chr6g0303961 Rosa chinensis HOM05D002849 ORTHO05D007186 7.1e-97 358.2 217 76.5
Cfa027047 Carpinus fangiana HOM05D002849 ORTHO05D007186 2.1e-96 356.7 263 63.9
HanXRQChr17g0533361 Helianthus annuus HOM05D002849 ORTHO05D007186 2.1e-96 356.7 217 76.0
Solyc08g074590.2 Solanum lycopersicum HOM05D002849 ORTHO05D007186 2.1e-96 356.7 219 75.3
Sopen08g023190 Solanum pennellii HOM05D002849 ORTHO05D007186 2.1e-96 356.7 219 75.3
AUR62036771 Chenopodium quinoa HOM05D002849 ORTHO05D007186 6.0e-96 355.1 290 62.4
ATR0661G072 Amborella trichopoda HOM05D002849 ORTHO05D007186 1.3e-95 354.0 217 76.5
Cpa.g.sc26.233 Carica papaya HOM05D002849 ORTHO05D007186 4.3e-94 349.0 316 58.2
CARHR139450 Cardamine hirsuta HOM05D002849 ORTHO05D007186 1.6e-93 347.1 213 76.1
Peaxi162Scf00166g00641 Petunia axillaris HOM05D002849 ORTHO05D007186 2.7e-88 329.7 216 71.8
TAR628G0269 Trochodendron aralioides HOM05D002849 ORTHO05D007186 1.6e-85 320.5 218 72.0
Nitab4.5_0000907g0040 Nicotiana tabacum HOM05D002849 ORTHO05D007186 2.0e-83 313.5 336 53.6
Ah.01g004180 Amaranthus hybridus HOM05D002849 ORTHO05D007186 9.0e-68 261.5 221 60.2
Psat5g001160 Pisum sativum HOM05D002849 ORTHO05D007186 2.1e-64 250.4 195 66.2
Lj9A176T24 Lonicera japonica HOM05D002849 ORTHO05D007186 6.3e-53 212.2 190 58.4
VMungo1309G1925 Vigna mungo HOM05D002849 ORTHO05D007186 5.7e-46 189.1 267 41.6
CARHR139440 Cardamine hirsuta HOM05D002849 ORTHO05D007186 3.1e-44 183.3 133 71.4
Peaxi162Scf00445g00105 Petunia axillaris HOM05D002849 ORTHO05D007186 5.1e-39 166.0 140 57.9
ATR0661G077 Amborella trichopoda HOM05D002849 ORTHO05D007186 2.2e-37 160.6 122 67.2
HanXRQChr17g0533371 Helianthus annuus HOM05D002849 ORTHO05D007186 4.8e-37 159.5 88 83.0
Peaxi162Scf00166g00633 Petunia axillaris HOM05D002849 ORTHO05D007186 1.5e-35 154.5 105 73.3
Prupe.3G237200 Prunus persica HOM05D002849 ORTHO05D007186 2.6e-30 137.1 83 75.9
SalBow6G3808 Salvia bowleyana HOM05D002849 ORTHO05D007186 7.0e-28 129.0 104 64.4
RcHm_v2.0_Chr6g0303951 Rosa chinensis HOM05D002849 ORTHO05D007186 4.7e-24 116.3 86 64.0
SpUn0523_0010 Schrenkiella parvula HOM05D002849 ORTHO05D007186 4.0e-23 113.2 107 55.1
MELO3C004787.2 Cucumis melo HOM05D002849 ORTHO05D007186 5.2e-23 112.8 74 70.3
FAN08G3136 Fragaria x ananassa HOM05D002849 ORTHO05D007186 5.2e-23 112.8 70 78.6
MELO3C012882.2 Cucumis melo HOM05D002849 ORTHO05D007186 1.1e-20 105.1 77 64.9
MELO3C034170.2 Cucumis melo HOM05D002849 ORTHO05D007186 8.0e-16 89.0 57 70.2
MELO3C003855.2 Cucumis melo HOM05D002849 ORTHO05D007186 9.8e-14 82.0 60 65.0
Gorai.007G371200 Gossypium raimondii HOM05D002849 ORTHO05D047384 2.7e-11 73.9 59 52.5
BolC5t33314H Brassica oleracea HOM05D002849 ORTHO05D024297 1.3e-10 71.6 77 51.9
C05p45940 Brassica napus HOM05D002849 ORTHO05D024297 1.1e-09 68.6 71 52.1
Gohir.D11G341150 Gossypium hirsutum HOM05D002849 ORTHO05D047384 1.5e-09 68.2 64 48.4
TAR276G0001 Trochodendron aralioides HOM05D002849 ORTHO05D051491 2.5e-09 67.4 54 61.1
BcaB01g01492 Brassica carinata HOM05D002849 ORTHO05D027174 5.5e-09 66.2 44 72.7
Actinidia17029 Actinidia chinensis HOM05D000148 ORTHO05D000081 1.6e-08 64.7 31 87.1
AL7G13010 Arabidopsis lyrata HOM05D002849 ORTHO05D007186 8.9e-07 58.9 34 67.6


User provided reference genes

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