Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.016G015100 Populus trichocarpa HOM05D003850 ORTHO05D004515 3.4e-239 831.6 539 100.0
Potri.006G009100 Populus trichocarpa HOM05D003850 ORTHO05D004515 4.0e-216 755.0 538 83.3
QL05p069776 Quercus lobata HOM05D003850 ORTHO05D004515 8.4e-190 667.5 543 74.2
Ciclev10014841m.g Citrus clementina HOM05D003850 ORTHO05D004515 1.8e-187 659.8 543 74.4
Atru.chr1.2461 Acer truncatum HOM05D003850 ORTHO05D004515 7.4e-186 654.4 544 73.0
Sabra16G0017100 Salix brachista HOM05D003850 ORTHO05D004515 2.8e-185 652.5 570 70.9
Sabra06G0006900 Salix brachista HOM05D003850 ORTHO05D004515 3.1e-184 649.0 543 73.5
TAR624G0821 Trochodendron aralioides HOM05D003850 ORTHO05D004515 6.9e-184 647.9 544 73.3
Nn1g03331 Nelumbo nucifera HOM05D003850 ORTHO05D004515 1.4e-181 640.2 544 72.1
Sabra16G0000900 Salix brachista HOM05D003850 ORTHO05D004515 5.1e-179 631.7 548 67.5
CSS0032808 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 1.9e-178 629.8 540 68.0
Phvul.006G143600 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 8.2e-177 624.4 546 72.5
CANSAT56G0590 Cannabis sativa HOM05D003850 ORTHO05D004515 1.4e-176 623.6 543 68.5
Duzib160G0220 Durio zibethinus HOM05D003850 ORTHO05D004515 2.0e-175 619.8 555 68.3
TAR629G2665 Trochodendron aralioides HOM05D003850 ORTHO05D004515 4.5e-175 618.6 539 69.8
CiPaw.09G102000 Carya illinoinensis HOM05D003850 ORTHO05D004515 1.7e-174 616.7 552 69.6
Manes.07G088900 Manihot esculenta HOM05D003850 ORTHO05D004515 9.3e-173 610.9 538 71.7
Thecc.06G232700 Theobroma cacao HOM05D003850 ORTHO05D004515 4.6e-172 608.6 554 68.8
GSVIVG01003352001 Vitis vinifera HOM05D003850 ORTHO05D004515 1.3e-171 607.1 543 72.2
CSS0007684 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 1.8e-171 606.7 546 68.7
Lalb_Chr20g0119201 Lupinus albus HOM05D003850 ORTHO05D004515 1.5e-170 603.6 546 72.7
arahy.Tifrunner.gnm1.ann1.C17RPB Arachis hypogaea HOM05D003850 ORTHO05D004515 5.7e-170 601.7 542 66.4
PSO210G4264 Papaver somniferum HOM05D003850 ORTHO05D004515 7.4e-170 601.3 547 71.3
THA.LOC104812992 Tarenaya hassleriana HOM05D003850 ORTHO05D004515 9.7e-170 600.9 549 67.2
VMungo1215G3075 Vigna mungo HOM05D003850 ORTHO05D004515 1.3e-169 600.5 544 69.9
Glyma.09G009900 Glycine max HOM05D003850 ORTHO05D004515 2.2e-169 599.7 552 66.5
Glyma.15G114200 Glycine max HOM05D003850 ORTHO05D004515 3.7e-169 599.0 545 76.0
Eucgr.E03951 Eucalyptus grandis HOM05D003850 ORTHO05D004515 4.8e-169 598.6 546 67.4
RhsimUnG0025700 Rhododendron simsii HOM05D003850 ORTHO05D004515 6.3e-169 598.2 588 65.1
RhsimUnG0028500 Rhododendron simsii HOM05D003850 ORTHO05D004515 6.3e-169 598.2 588 65.1
Sed0003006 Sechium edule HOM05D003850 ORTHO05D004515 1.1e-168 597.4 543 67.6
MSTRG.7170 Avicennia marina HOM05D003850 ORTHO05D004515 9.0e-168 594.3 541 68.2
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 2.0e-167 593.2 542 69.2
Ca_00718_v3 Cicer arietinum L. HOM05D003850 ORTHO05D004515 4.5e-167 592.0 546 64.5
Aqoxy1G04110 Aquilegia oxysepala HOM05D003850 ORTHO05D004515 7.7e-167 591.3 551 64.4
VMungo0540G1287 Vigna mungo HOM05D003850 ORTHO05D004515 1.3e-166 590.5 545 66.4
arahy.Tifrunner.gnm1.ann1.IIR6TV Arachis hypogaea HOM05D003850 ORTHO05D004515 5.0e-166 588.6 544 65.4
PSO302G0165 Papaver somniferum HOM05D003850 ORTHO05D004515 2.5e-165 586.3 546 76.2
PGR102G0753 Punica granatum HOM05D003850 ORTHO05D004515 2.5e-165 586.3 542 69.0
Gorai.010G186300 Gossypium raimondii HOM05D003850 ORTHO05D004515 4.6e-164 582.0 560 71.1
Cc09_g00920 Coffea canephora HOM05D003850 ORTHO05D004515 6.1e-164 581.6 542 68.3
Gohir.A06G153120 Gossypium hirsutum HOM05D003850 ORTHO05D004515 7.9e-164 581.3 552 70.3
SalBow8G5272 Salvia bowleyana HOM05D003850 ORTHO05D004515 6.7e-163 578.2 553 67.5
Migut.M01390 Erythranthe guttata HOM05D003850 ORTHO05D004515 8.8e-163 577.8 539 64.2
Sopen11g006940 Solanum pennellii HOM05D003850 ORTHO05D004515 1.3e-161 573.9 540 65.0
Gohir.D06G159600 Gossypium hirsutum HOM05D003850 ORTHO05D004515 2.2e-161 573.2 560 70.7
Phvul.003G083500 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 2.2e-161 573.2 544 68.6
Nitab4.5_0001198g0010 Nicotiana tabacum HOM05D003850 ORTHO05D004515 4.8e-161 572.0 532 65.8
CsaV3_3G028740 Cucumis sativus L. HOM05D003850 ORTHO05D004515 1.4e-160 570.5 545 65.9
Nitab4.5_0000143g0310 Nicotiana tabacum HOM05D003850 ORTHO05D004515 1.8e-160 570.1 532 71.4
Prupe.4G011300 Prunus persica HOM05D003850 ORTHO05D004515 9.1e-160 567.8 543 65.6
arahy.Tifrunner.gnm1.ann1.97WSNQ Arachis hypogaea HOM05D003850 ORTHO05D004515 1.5e-159 567.0 555 66.3
vmacro15772 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 7.2e-157 558.1 554 67.3
ClCG07G001740 Citrullus lanatus HOM05D003850 ORTHO05D004515 1.6e-156 557.0 542 65.9
MBI16_g42266_MAGBIO Magnolia biondii HOM05D003850 ORTHO05D004515 1.6e-156 557.0 546 65.9
ECA233G3046 Erigeron canadensis HOM05D003850 ORTHO05D004515 3.6e-156 555.8 561 66.5
Oeu002760.2 Olea europaea HOM05D003850 ORTHO05D004515 1.4e-155 553.9 576 63.5
TPR.G3343 Trifolium pratense HOM05D003850 ORTHO05D004515 1.8e-155 553.5 568 62.7
Aa31LG9G10040 Aethionema arabicum HOM05D003850 ORTHO05D004515 2.3e-155 553.1 560 68.6
Cfa000110 Carpinus fangiana HOM05D003850 ORTHO05D004515 1.3e-153 547.4 545 66.8
arahy.Tifrunner.gnm1.ann1.0C9QHL Arachis hypogaea HOM05D003850 ORTHO05D004515 2.8e-153 546.2 557 64.6
HPP92_001629 Vanilla planifolia HOM05D003850 ORTHO05D004515 8.2e-153 544.7 542 59.6
SEGI_18521 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 1.8e-152 543.5 553 67.6
Lj6g0013016 Lotus japonicus HOM05D003850 ORTHO05D004515 4.1e-152 542.3 548 75.0
AL6G47570 Arabidopsis lyrata HOM05D003850 ORTHO05D004515 7.0e-152 541.6 548 65.9
Actinidia39269 Actinidia chinensis HOM05D003850 ORTHO05D004515 2.9e-150 536.2 360 81.1
COL.COLO4_31876 Corchorus olitorius HOM05D003850 ORTHO05D004515 1.4e-149 533.9 552 65.8
Medtr2g025590 Medicago truncatula HOM05D003850 ORTHO05D004515 7.2e-149 531.6 543 65.4
SGA_v2.0_scaffold4G01878 Striga asiatica HOM05D003850 ORTHO05D004515 2.1e-148 530.0 527 65.8
MD05G1357300 Malus domestica HOM05D003850 ORTHO05D004515 1.4e-147 527.3 548 63.5
Haze_08659 Corylus avellana HOM05D003850 ORTHO05D004515 8.8e-147 524.6 582 59.3
Lj2A262G45 Lonicera japonica HOM05D003850 ORTHO05D004515 2.0e-146 523.5 515 66.4
CiPaw.10G077600 Carya illinoinensis HOM05D003850 ORTHO05D004515 5.7e-146 521.9 493 63.3
TWI63G0294 Tripterygium wilfordii HOM05D003850 ORTHO05D004515 2.2e-145 520.0 513 69.0
AT4G12610 Arabidopsis thaliana HOM05D003850 ORTHO05D004515 3.7e-145 519.2 549 65.6
ATR0751G086 Amborella trichopoda HOM05D003850 ORTHO05D004515 6.3e-145 518.5 550 61.1
Cpa.g.sc75.120 Carica papaya HOM05D003850 ORTHO05D004515 2.4e-144 516.5 542 64.9
AUR62021872 Chenopodium quinoa HOM05D003850 ORTHO05D004515 4.1e-144 515.8 546 56.2
Lj4g0025543 Lotus japonicus HOM05D003850 ORTHO05D004515 9.1e-144 514.6 546 60.8
PGSC0003DMG400013344 Solanum tuberosum HOM05D003850 ORTHO05D004515 4.5e-143 512.3 503 64.2
Peaxi162Scf00558g00516 Petunia axillaris HOM05D003850 ORTHO05D004515 2.2e-142 510.0 483 67.1
Solyc11g012150.3 Solanum lycopersicum HOM05D003850 ORTHO05D004515 1.1e-141 507.7 503 64.0
Carub.0006s3188 Capsella rubella HOM05D003850 ORTHO05D004515 2.7e-140 503.1 548 63.5
HanXRQChr15g0470091 Helianthus annuus HOM05D003850 ORTHO05D004515 2.3e-139 500.0 534 64.0
SHI24464 Sapria himalayana HOM05D003850 ORTHO05D004515 1.2e-138 497.7 539 57.3
vmacro03646 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 1.2e-138 497.7 565 55.4
Sp6g04900 Schrenkiella parvula HOM05D003850 ORTHO05D004515 9.7e-138 494.6 546 67.4
C03p36090 Brassica napus HOM05D003850 ORTHO05D004515 2.4e-136 490.0 548 63.9
BcaC01g04577 Brassica carinata HOM05D003850 ORTHO05D004515 1.2e-135 487.6 550 63.8
BolC3t15918H Brassica oleracea HOM05D003850 ORTHO05D004515 1.2e-135 487.6 550 63.8
BcaB01g02623 Brassica carinata HOM05D003850 ORTHO05D004515 1.7e-134 483.8 539 69.0
FAN25G3770 Fragaria x ananassa HOM05D003850 ORTHO05D004515 5.0e-134 482.3 586 54.3
A03p29830 Brassica napus HOM05D003850 ORTHO05D004515 6.5e-134 481.9 548 63.0
BcaB01g01757 Brassica carinata HOM05D003850 ORTHO05D004515 8.5e-134 481.5 536 62.7
BraA03t12173Z Brassica rapa HOM05D003850 ORTHO05D004515 3.2e-133 479.6 551 63.0
CARHR253560 Cardamine hirsuta HOM05D003850 ORTHO05D004515 5.5e-133 478.8 542 61.8
BraA09t38246Z Brassica rapa HOM05D003850 ORTHO05D004515 7.2e-133 478.4 542 62.4
FvH4_3g01042 Fragaria vesca HOM05D003850 ORTHO05D004515 2.1e-132 476.9 560 55.0
PSO339G3925 Papaver somniferum HOM05D003850 ORTHO05D004515 2.1e-132 476.9 550 60.5
Thhalv10028564m.g Eutrema salsugineum HOM05D003850 ORTHO05D004515 1.4e-131 474.2 543 63.2
BolC9t56221H Brassica oleracea HOM05D003850 ORTHO05D004515 1.8e-131 473.8 537 59.8
A09p26740 Brassica napus HOM05D003850 ORTHO05D004515 8.8e-131 471.5 541 66.0
CAN.G1186.28 Capsicum annuum HOM05D003850 ORTHO05D004515 1.2e-130 471.1 542 57.6
RhsimUnG0109100 Rhododendron simsii HOM05D003850 ORTHO05D004515 2.0e-130 470.3 530 56.0
MD10G1331000 Malus domestica HOM05D003850 ORTHO05D004515 2.6e-130 469.9 514 62.5
unitig_748.g7103 Utricularia gibba HOM05D003850 ORTHO05D004515 2.6e-130 469.9 536 56.3
Oeu044421.3 Olea europaea HOM05D003850 ORTHO05D004515 3.7e-129 466.1 836 44.0
BcaC04g21251 Brassica carinata HOM05D003850 ORTHO05D004515 1.4e-128 464.2 537 68.3
C09p33830 Brassica napus HOM05D003850 ORTHO05D004515 1.4e-128 464.2 537 68.3
FAN21G1422 Fragaria x ananassa HOM05D003850 ORTHO05D004515 9.5e-125 451.4 578 52.2
Lsat_1_v5_gn_7_13561 Lactuca sativa HOM05D003850 ORTHO05D004515 3.6e-124 449.5 494 63.8
Zm00001eb224360 Zea mays HOM05D003850 ORTHO05D004515 1.4e-123 447.6 488 61.1
Rhsim13G0146600 Rhododendron simsii HOM05D003850 ORTHO05D004515 6.8e-123 445.3 584 50.9
RcHm_v2.0_Chr5g0001581 Rosa chinensis HOM05D003850 ORTHO05D004515 8.9e-123 444.9 561 54.4
CDE04G2591 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 2.7e-119 433.3 542 53.9
EL10Ac8g20176 Beta vulgaris HOM05D003850 ORTHO05D004515 5.0e-118 429.1 550 56.2
Hund23984 Selenicereus undatus HOM05D003850 ORTHO05D004515 1.1e-117 427.9 558 55.0
MELO3C012788.2 Cucumis melo HOM05D003850 ORTHO05D004515 1.0e-115 421.4 469 61.8
Psat1g176560 Pisum sativum HOM05D003850 ORTHO05D004515 1.1e-112 411.4 468 63.2
Mapoly0105s0015 Marchantia polymorpha HOM05D003850 ORTHO05D004515 1.6e-111 407.5 555 55.5
Pp3c3_2280 Physcomitrium patens HOM05D003850 ORTHO05D004515 3.9e-110 402.9 556 50.9
CDE06G1774 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 1.1e-109 401.4 325 67.7
Lj8A171G42 Lonicera japonica HOM05D003850 ORTHO05D004515 1.1e-109 401.4 544 47.4
Zm00001eb398520 Zea mays HOM05D003850 ORTHO05D004515 2.3e-102 377.1 542 45.2
RcHm_v2.0_Chr5g0007791 Rosa chinensis HOM05D003850 ORTHO05D004515 1.4e-99 367.9 553 49.4
Duzib235G1223 Durio zibethinus HOM05D003850 ORTHO05D004515 4.4e-98 362.8 412 63.1
Medtr2g025620 Medicago truncatula HOM05D003850 ORTHO05D004515 8.3e-97 358.6 522 58.0
FAN11G3915 Fragaria x ananassa HOM05D003850 ORTHO05D004515 3.3e-93 346.7 552 44.2
FAN16G3024 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.2e-92 344.7 551 43.2
DCAR_025996 Daucus carota HOM05D003850 ORTHO05D004515 2.1e-92 344.0 442 61.8
FvH4_2g22070 Fragaria vesca HOM05D003850 ORTHO05D004515 2.1e-92 344.0 557 42.5
FvH4_3g04782 Fragaria vesca HOM05D003850 ORTHO05D004515 2.1e-92 344.0 552 43.7
FAN03G2951 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.4e-91 341.3 545 44.6
FAN21G1676 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.4e-91 341.3 545 44.6
FAN24G0125 Fragaria x ananassa HOM05D003850 ORTHO05D008045 4.4e-90 336.3 557 42.2
QL09p006300 Quercus lobata HOM05D003850 ORTHO05D004515 1.3e-86 324.7 364 66.2
TPR.G34491 Trifolium pratense HOM05D003850 ORTHO05D004515 2.3e-86 323.9 195 77.4
AUR62012783 Chenopodium quinoa HOM05D003850 ORTHO05D004515 1.1e-85 321.6 425 51.1
AagrBONN_evm.TU.Sc2ySwM_228.4136 Anthoceros agrestis HOM05D003850 ORTHO05D004515 1.8e-83 314.3 353 54.1
Dinv07398 Davidia involucrata HOM05D003850 ORTHO05D004515 4.8e-76 289.7 268 79.1
Peaxi162Scf00015g02110 Petunia axillaris HOM05D003850 ORTHO05D004515 5.1e-70 269.6 312 56.4
SEGI_38016 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 1.4e-67 261.5 334 47.6
TPR.G13041 Trifolium pratense HOM05D003850 ORTHO05D004515 1.2e-66 258.5 368 59.5
HPP92_001646 Vanilla planifolia HOM05D003850 ORTHO05D004515 2.0e-58 231.1 244 63.9
Sc17g0007710 Simmondsia chinensis HOM05D003850 ORTHO05D004515 1.3e-57 228.4 369 56.6
FAN25G2646 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.8e-51 208.0 506 34.4
Actinidia11880 Actinidia chinensis HOM05D003850 ORTHO05D004515 1.3e-49 201.8 359 47.9
Gorai.002G145900 Gossypium raimondii HOM05D003850 ORTHO05D004515 2.0e-45 188.0 176 80.1
Lsat_1_v5_gn_5_64561 Lactuca sativa HOM05D003952 ORTHO05D004515 2.5e-40 171.0 165 70.9
HPP92_001645 Vanilla planifolia HOM05D003850 ORTHO05D004515 2.3e-38 164.5 100 73.0
CBR_g38333 Chara braunii HOM05D000019 ORTHO05D000002 2.8e-36 157.5 244 44.3
TAR629G2548 Trochodendron aralioides HOM05D003850 ORTHO05D004515 5.3e-27 126.7 315 33.3
Gohir.D01G119450 Gossypium hirsutum HOM05D003850 ORTHO05D004515 9.1e-27 125.9 101 79.2
RcHm_v2.0_Chr6g0288941 Rosa chinensis HOM05D003850 ORTHO05D004515 8.0e-23 112.8 272 37.1
CDE06G0619 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 1.0e-22 112.5 209 55.5
AagrBONN_evm.TU.Sc2ySwM_228.3786 Anthoceros agrestis HOM05D003850 ORTHO05D004515 2.6e-21 107.8 140 40.7
PSO339G5270 Papaver somniferum HOM05D003850 ORTHO05D004515 1.8e-19 101.7 58 74.1
Lsat_1_v5_gn_3_78300 Lactuca sativa HOM05D002115 ORTHO05D002263 3.1e-19 100.9 57 86.0
VMungo0720G0179 Vigna mungo HOM05D003850 ORTHO05D004515 1.3e-17 95.5 51 84.3
HPP92_001647 Vanilla planifolia HOM05D003850 ORTHO05D004515 2.2e-17 94.7 84 61.9
arahy.Tifrunner.gnm1.ann1.5H9H8Z Arachis hypogaea HOM05D003850 ORTHO05D004515 5.0e-17 93.6 89 60.7
arahy.Tifrunner.gnm1.ann1.4A53N1 Arachis hypogaea HOM05D003850 ORTHO05D004515 6.5e-17 93.2 92 59.8
arahy.Tifrunner.gnm1.ann1.N7GRQP Arachis hypogaea HOM05D003850 ORTHO05D004515 1.2e-15 89.0 77 63.6
arahy.Tifrunner.gnm1.ann1.UE8YUV Arachis hypogaea HOM05D003850 ORTHO05D004515 1.2e-15 89.0 77 63.6
Eucgr.A01650 Eucalyptus grandis HOM05D002251 ORTHO05D004515 2.7e-15 87.8 54 64.8
PSO384G4333 Papaver somniferum HOM05D003850 ORTHO05D004515 6.1e-15 86.7 66 66.7
Nitab4.5_0013082g0020 Nicotiana tabacum HOM05D003850 ORTHO05D004515 3.0e-14 84.3 80 60.0
Nitab4.5_0006771g0010 Nicotiana tabacum HOM05D003850 ORTHO05D004515 3.4e-13 80.9 77 62.3
AagrBONN_evm.TU.Sc2ySwM_228.3787 Anthoceros agrestis HOM05D003850 ORTHO05D004515 7.5e-13 79.7 247 42.1
CAN.G1186.27 Capsicum annuum HOM05D001620 ORTHO05D005461 3.1e-11 74.3 59 57.6
Aqoxy1G04111 Aquilegia oxysepala HOM05D004257 ORTHO05D004515 1.2e-10 72.4 73 52.1
CARHR253550 Cardamine hirsuta HOM05D003850 ORTHO05D004515 3.8e-09 67.4 64 54.7
CBR_g38329 Chara braunii HOM05D003850 ORTHO05D004515 3.8e-09 67.4 84 40.5
PSO339G0182 Papaver somniferum HOM05D009217 ORTHO05D009626 5.0e-09 67.0 83 48.2
SEGI_19210 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 6.6e-09 66.6 130 29.2
arahy.Tifrunner.gnm1.ann1.GFC3N0 Arachis hypogaea HOM05D003850 ORTHO05D004515 8.6e-09 66.2 59 57.6
SEGI_29277 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 1.5e-08 65.5 205 29.8
Aa31LG9G10030 Aethionema arabicum HOM05D003850 ORTHO05D004515 4.2e-08 63.9 54 61.1
FAN21G0780 Fragaria x ananassa HOM05D003850 ORTHO05D004515 2.3e-06 58.2 210 32.9


User provided reference genes

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