Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.013G054300 Populus trichocarpa HOM05D005431 ORTHO05D006762 6.9e-260 900.2 480 100.0
Sabra13G0049000 Salix brachista HOM05D005431 ORTHO05D006762 6.7e-239 830.5 480 92.9
Manes.08G148100 Manihot esculenta HOM05D005431 ORTHO05D006762 3.0e-183 645.6 458 77.3
Thecc.05G259000 Theobroma cacao HOM05D005431 ORTHO05D006762 3.6e-176 622.1 486 71.4
Dinv18088 Davidia involucrata HOM05D005431 ORTHO05D006762 1.3e-173 613.6 483 69.6
QL07p020652 Quercus lobata HOM05D005431 ORTHO05D006762 2.4e-172 609.4 469 71.6
COL.COLO4_08630 Corchorus olitorius HOM05D005431 ORTHO05D006762 4.1e-172 608.6 489 70.1
Gohir.A11G240400 Gossypium hirsutum HOM05D005431 ORTHO05D006762 1.6e-171 606.7 486 70.2
TAR633G0900 Trochodendron aralioides HOM05D005431 ORTHO05D006762 2.3e-170 602.8 481 69.2
Gohir.D11G249800 Gossypium hirsutum HOM05D005431 ORTHO05D006762 5.0e-170 601.7 486 69.8
Duzib177G0804 Durio zibethinus HOM05D005431 ORTHO05D006762 3.1e-167 592.4 488 68.6
CiPaw.10G000400 Carya illinoinensis HOM05D005431 ORTHO05D006762 1.7e-165 586.6 473 71.0
Gorai.007G267600 Gossypium raimondii HOM05D005431 ORTHO05D006762 2.2e-165 586.3 481 69.0
GSVIVG01020933001 Vitis vinifera HOM05D005431 ORTHO05D006762 6.4e-165 584.7 443 76.1
Lj1A1139T47 Lonicera japonica HOM05D005431 ORTHO05D006762 6.0e-163 578.2 483 67.3
CSS0010563 Camellia sinensis var. sinensis HOM05D005431 ORTHO05D006762 3.6e-160 568.9 449 71.0
Ciclev10020067m.g Citrus clementina HOM05D005431 ORTHO05D006762 4.7e-160 568.5 456 71.1
TWI32G0483 Tripterygium wilfordii HOM05D005431 ORTHO05D006762 4.7e-160 568.5 465 67.7
Sc24g0002060 Simmondsia chinensis HOM05D005431 ORTHO05D006762 8.1e-160 567.8 480 68.3
Atru.chr2.1265 Acer truncatum HOM05D005431 ORTHO05D006762 5.2e-159 565.1 477 69.0
Prupe.6G097200 Prunus persica HOM05D005431 ORTHO05D006762 5.2e-159 565.1 469 68.4
Eucgr.A02076 Eucalyptus grandis HOM05D005431 ORTHO05D006762 1.2e-158 563.9 486 66.7
PSO384G4368 Papaver somniferum HOM05D005431 ORTHO05D006762 1.2e-158 563.9 469 68.4
PSO339G6142 Papaver somniferum HOM05D005431 ORTHO05D006762 1.5e-158 563.5 472 67.2
Rhsim06G0113900 Rhododendron simsii HOM05D005431 ORTHO05D006762 7.6e-158 561.2 517 63.4
Glyma.16G042800 Glycine max HOM05D005431 ORTHO05D006762 4.1e-156 555.4 460 66.7
Lalb_Chr14g0364381 Lupinus albus HOM05D005431 ORTHO05D006762 7.1e-156 554.7 466 67.6
MBI13_g30325_MAGBIO Magnolia biondii HOM05D005431 ORTHO05D006762 4.6e-155 552.0 458 69.0
CSS0005177 Camellia sinensis var. sinensis HOM05D005431 ORTHO05D006762 6.0e-155 551.6 449 70.4
MD03G1112900 Malus domestica HOM05D005431 ORTHO05D006762 1.0e-154 550.8 457 69.8
Aqoxy2G02389 Aquilegia oxysepala HOM05D005431 ORTHO05D006762 1.3e-154 550.4 446 67.0
Glyma.19G109200 Glycine max HOM05D005431 ORTHO05D006762 1.3e-154 550.4 477 66.2
Cfa016425 Carpinus fangiana HOM05D005431 ORTHO05D006762 6.6e-154 548.1 468 68.8
Lj1g0019204 Lotus japonicus HOM05D005431 ORTHO05D006762 1.6e-152 543.5 462 68.4
Medtr7g085290 Medicago truncatula HOM05D005431 ORTHO05D006762 1.6e-152 543.5 479 66.2
Aqoxy6G02574 Aquilegia oxysepala HOM05D005431 ORTHO05D006762 1.1e-151 540.8 447 67.1
Oeu051845.1 Olea europaea HOM05D005431 ORTHO05D006762 1.1e-151 540.8 454 65.9
Haze_19398 Corylus avellana HOM05D005431 ORTHO05D006762 1.8e-151 540.0 468 68.4
HanXRQChr02g0054501 Helianthus annuus HOM05D005431 ORTHO05D006762 4.0e-151 538.9 483 65.4
CANSAT78G0764 Cannabis sativa HOM05D005431 ORTHO05D006762 1.2e-150 537.3 451 69.0
arahy.Tifrunner.gnm1.ann1.UBW8VJ Arachis hypogaea HOM05D005431 ORTHO05D006762 2.6e-150 536.2 442 69.2
AUR62035802 Chenopodium quinoa HOM05D005431 ORTHO05D006762 1.3e-149 533.9 450 68.2
Lsat_1_v5_gn_6_37921 Lactuca sativa HOM05D005431 ORTHO05D006762 1.3e-149 533.9 480 61.2
ECA233G5562 Erigeron canadensis HOM05D005431 ORTHO05D006762 1.6e-147 526.9 456 65.8
Ca_08254_v3 Cicer arietinum L. HOM05D005431 ORTHO05D006762 3.5e-147 525.8 477 63.7
Phvul.001G100700 Phaseolus vulgaris HOM05D005431 ORTHO05D006762 3.5e-147 525.8 464 63.4
Potri.019G031700 Populus trichocarpa HOM05D005431 ORTHO05D006762 4.6e-147 525.4 352 82.4
PGR042G1130 Punica granatum HOM05D005431 ORTHO05D006762 2.8e-144 516.2 485 62.9
Duzib128G1128 Durio zibethinus HOM05D005431 ORTHO05D006762 5.3e-143 511.9 484 63.0
Peaxi162Scf00362g01188 Petunia axillaris HOM05D005431 ORTHO05D006762 2.6e-142 509.6 445 64.3
SalBow1G3497 Salvia bowleyana HOM05D005431 ORTHO05D006762 7.6e-142 508.1 445 64.5
FvH4_3g32950 Fragaria vesca HOM05D005431 ORTHO05D006762 2.4e-140 503.1 451 65.6
MSTRG.16956 Avicennia marina HOM05D005431 ORTHO05D006762 1.2e-139 500.7 452 61.3
Cc10_g14020 Coffea canephora HOM05D005431 ORTHO05D006762 2.1e-139 500.0 472 59.7
Psat3g089720 Pisum sativum HOM05D005431 ORTHO05D006762 1.0e-138 497.7 479 63.7
PGSC0003DMG400001606 Solanum tuberosum HOM05D005431 ORTHO05D006762 1.3e-138 497.3 449 63.0
VMungo1383G2520 Vigna mungo HOM05D005431 ORTHO05D006762 3.9e-138 495.7 460 61.5
Solyc01g110820.4 Solanum lycopersicum HOM05D005431 ORTHO05D006762 1.1e-137 494.2 449 63.7
BolC5t29482H Brassica oleracea HOM05D005431 ORTHO05D006762 1.3e-136 490.7 449 59.2
FAN16G2474 Fragaria x ananassa HOM05D005431 ORTHO05D006762 1.3e-136 490.7 451 61.9
HPP92_006679 Vanilla planifolia HOM05D005431 ORTHO05D006762 1.3e-136 490.7 448 64.3
AT1G09230 Arabidopsis thaliana HOM05D005431 ORTHO05D006762 8.1e-136 488.0 461 59.0
BraA06t23807Z Brassica rapa HOM05D005431 ORTHO05D006762 1.4e-135 487.3 460 57.4
FAN11G0735 Fragaria x ananassa HOM05D005431 ORTHO05D006762 1.8e-135 486.9 445 64.7
Sp1g07840 Schrenkiella parvula HOM05D005431 ORTHO05D006762 5.3e-135 485.3 480 56.9
Os03g0326600 Oryza sativa ssp. japonica HOM05D005431 ORTHO05D006762 6.9e-135 485.0 446 61.2
RcHm_v2.0_Chr5g0060221 Rosa chinensis HOM05D005431 ORTHO05D006762 9.0e-135 484.6 452 63.1
THA.LOC104805792 Tarenaya hassleriana HOM05D005431 ORTHO05D006762 9.0e-135 484.6 456 59.9
Cfa011866 Carpinus fangiana HOM05D005431 ORTHO05D006762 5.8e-134 481.9 420 67.4
C05p07240 Brassica napus HOM05D005431 ORTHO05D006762 1.3e-133 480.7 446 58.5
TPR.G5901 Trifolium pratense HOM05D005431 ORTHO05D006762 1.7e-133 480.3 523 56.0
Haze_21236 Corylus avellana HOM05D005431 ORTHO05D006762 4.9e-133 478.8 418 67.2
Thhalv10007645m.g Eutrema salsugineum HOM05D005431 ORTHO05D006762 6.4e-133 478.4 486 54.9
vmacro12472 Vaccinium macrocarpon HOM05D005431 ORTHO05D006762 2.4e-132 476.5 645 49.9
Nn7g35775 Nelumbo nucifera HOM05D005431 ORTHO05D006762 3.2e-132 476.1 474 56.8
Zm00001eb015560 Zea mays HOM05D005431 ORTHO05D006762 7.1e-132 474.9 447 59.5
A06p05970 Brassica napus HOM05D005431 ORTHO05D006762 9.3e-132 474.6 446 57.4
SGA_v2.0_scaffold32G13347 Striga asiatica HOM05D005431 ORTHO05D006762 9.3e-132 474.6 447 61.1
Sopen01g052890 Solanum pennellii HOM05D005431 ORTHO05D006762 2.1e-131 473.4 448 60.0
Nitab4.5_0001364g0090 Nicotiana tabacum HOM05D005431 ORTHO05D006762 3.3e-129 466.1 419 65.4
CDE02G0906 Ceratophyllum demersum HOM05D005431 ORTHO05D006762 3.7e-128 462.6 456 61.2
Carub.0001s0857 Capsella rubella HOM05D005431 ORTHO05D006762 4.0e-127 459.1 460 54.1
ATR0782G102 Amborella trichopoda HOM05D005431 ORTHO05D006762 1.2e-126 457.6 484 58.1
AL1G19720 Arabidopsis lyrata HOM05D005431 ORTHO05D006762 1.2e-126 457.6 461 55.5
BcaC05g24779 Brassica carinata HOM05D005431 ORTHO05D006762 1.5e-126 457.2 454 55.9
Aa31LG1G5950 Aethionema arabicum HOM05D005431 ORTHO05D006762 1.2e-123 447.6 507 51.7
Actinidia02566 Actinidia chinensis HOM05D005431 ORTHO05D006762 8.7e-122 441.4 347 72.0
arahy.Tifrunner.gnm1.ann1.H79Q9S Arachis hypogaea HOM05D005431 ORTHO05D006762 6.2e-120 435.3 442 60.2
Cpa.g.sc594.2 Carica papaya HOM05D005431 ORTHO05D006762 2.3e-114 416.8 383 65.8
Sed0005030 Sechium edule HOM05D005431 ORTHO05D006762 3.7e-112 409.5 355 65.6
EL10Ac8g19795 Beta vulgaris HOM05D005431 ORTHO05D006762 8.2e-112 408.3 326 73.3
SEGI_41626 Sequoiadendron giganteum HOM05D005431 ORTHO05D006762 1.7e-109 400.6 450 52.4
AUR62027554 Chenopodium quinoa HOM05D005431 ORTHO05D006762 5.5e-108 395.6 409 56.2
Migut.C00530 Erythranthe guttata HOM05D005431 ORTHO05D006762 1.0e-106 391.3 326 65.0
arahy.Tifrunner.gnm1.ann1.M3GFZ7 Arachis hypogaea HOM05D005431 ORTHO05D006762 2.1e-99 367.1 399 58.1
CsaV3_6G010080 Cucumis sativus L. HOM05D005431 ORTHO05D006762 1.7e-96 357.5 320 65.9
Pp3c5_17010 Physcomitrium patens HOM05D005431 ORTHO05D006762 5.2e-90 335.9 404 53.0
GSVIVG01010770001 Vitis vinifera HOM05D005431 ORTHO05D006762 5.0e-85 319.3 263 73.0
SMO339G0047 Selaginella moellendorffii HOM05D005431 ORTHO05D006762 8.0e-83 312.0 406 46.8
ClCG02G009850 Citrullus lanatus HOM05D005431 ORTHO05D006762 1.3e-77 294.7 296 61.8
AagrBONN_evm.TU.Sc2ySwM_228.5426 Anthoceros agrestis HOM05D005431 ORTHO05D006762 1.2e-75 288.1 328 52.4
CARHR009190 Cardamine hirsuta HOM05D005431 ORTHO05D006762 5.7e-73 279.3 282 56.4
Aqoxy113s003 Aquilegia oxysepala HOM05D005431 ORTHO05D006762 8.3e-72 275.4 422 44.3
Hund08532 Selenicereus undatus HOM05D005431 ORTHO05D006762 1.8e-58 231.1 356 46.6
BcaB03g13279 Brassica carinata HOM05D005431 ORTHO05D006762 7.0e-55 219.2 180 61.1
Rhsim03G0115400 Rhododendron simsii HOM05D005431 ORTHO05D006762 1.0e-53 215.3 349 44.4
Mapoly0054s0019 Marchantia polymorpha HOM05D005431 ORTHO05D006762 1.2e-51 208.4 283 47.3
CBR_g41665 Chara braunii HOM05D005431 ORTHO05D006762 1.3e-48 198.4 607 30.5
GSVIVG01010771001 Vitis vinifera HOM05D005431 ORTHO05D006762 4.6e-46 189.9 142 71.8
TPR.G5899 Trifolium pratense HOM05D000002 ORTHO05D000001 1.7e-40 171.4 164 66.5
Cpa.g.sc3384.1 Carica papaya HOM05D005431 ORTHO05D006762 7.1e-39 166.0 99 83.8
Hund08530 Selenicereus undatus HOM05D005431 ORTHO05D006762 7.1e-39 166.0 96 82.3
AagrBONN_evm.TU.Sc2ySwM_117.3064__3065 Anthoceros agrestis HOM05D005431 ORTHO05D006762 1.2e-38 165.2 254 44.9
Phvul.004G137800 Phaseolus vulgaris HOM05D005431 ORTHO05D006762 1.7e-37 161.4 97 78.4
MELO3C013491.2 Cucumis melo HOM05D005431 ORTHO05D006762 5.4e-31 139.8 181 54.1
MBI05_g45098_MAGBIO Magnolia biondii HOM05D005431 ORTHO05D006762 1.3e-29 135.2 178 60.1
Aqoxy6G02072 Aquilegia oxysepala HOM05D005431 ORTHO05D006762 1.1e-28 132.1 359 32.9
MBI05_g33993_MAGBIO Magnolia biondii HOM05D005431 ORTHO05D006762 2.4e-23 114.4 100 59.0
Lsat_1_v5_gn_3_133701 Lactuca sativa HOM05D005431 ORTHO05D006762 3.2e-23 114.0 170 51.2
SHI14717 Sapria himalayana HOM05D005431 ORTHO05D006762 5.4e-23 113.2 122 57.4
TPR.G552 Trifolium pratense HOM05D005431 ORTHO05D006762 1.5e-20 105.1 112 52.7
Pp3c25_8310 Physcomitrium patens HOM05D005431 ORTHO05D006762 2.4e-18 97.8 132 46.2
AagrBONN_evm.TU.Sc2ySwM_228.2880 Anthoceros agrestis HOM05D005431 ORTHO05D006762 5.8e-17 93.2 138 42.0
TPR.G5921 Trifolium pratense HOM05D005431 ORTHO05D006762 4.9e-16 90.1 54 77.8
SHI14712 Sapria himalayana HOM05D000001 ORTHO05D009229 3.2e-15 87.4 45 88.9
SHI14714 Sapria himalayana HOM05D005431 ORTHO05D006762 1.3e-13 82.0 49 81.6
C08p12570 Brassica napus HOM05D005431 ORTHO05D006762 1.1e-12 79.0 49 77.6
BolC8t48895H Brassica oleracea HOM05D005431 ORTHO05D006762 1.1e-12 79.0 49 77.6
RcHm_v2.0_Chr5g0076741 Rosa chinensis HOM05D005431 ORTHO05D006762 4.0e-10 70.5 62 62.9
SMO116G0263 Selaginella moellendorffii HOM05D005431 ORTHO05D006762 5.3e-10 70.1 83 44.6
SGA_v2.0_scaffold612G53193 Striga asiatica HOM05D005431 ORTHO05D006762 9.0e-10 69.3 50 64.0
CAN.G134.235 Capsicum annuum HOM05D005431 ORTHO05D006762 1.5e-09 68.6 56 57.1
Ah.14g086750 Amaranthus hybridus HOM05D005431 ORTHO05D006762 4.5e-09 67.0 46 65.2
ClCG02G009830 Citrullus lanatus HOM05D005431 ORTHO05D006762 4.9e-08 63.5 41 80.5
SHI14719 Sapria himalayana HOM05D005431 ORTHO05D006762 6.5e-08 63.2 33 87.9
SHI14720 Sapria himalayana HOM05D005431 ORTHO05D006762 5.5e-07 60.1 54 53.7
SEGI_17961 Sequoiadendron giganteum HOM05D005431 ORTHO05D006762 9.3e-07 59.3 118 37.3
Potri.019G121400 Populus trichocarpa HOM05D002411 ORTHO05D002564 3.5e-06 57.4 90 36.7
SEGI_34663 Sequoiadendron giganteum HOM05D002411 ORTHO05D002564 3.5e-06 57.4 89 33.7
Lsat_1_v5_gn_6_94960 Lactuca sativa HOM05D005431 ORTHO05D003355 4.6e-06 57.0 48 56.2


User provided reference genes

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