Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.009G106800 Populus trichocarpa HOM05D006129 ORTHO05D007446 0.0e+00 1647.9 820 100.0
Sabra09G0081600 Salix brachista HOM05D006129 ORTHO05D007446 0.0e+00 1166.8 659 89.5
Duzib248G0151 Durio zibethinus HOM05D006129 ORTHO05D007446 0.0e+00 1081.6 811 68.7
QL11p038411 Quercus lobata HOM05D006129 ORTHO05D007446 0.0e+00 1081.6 831 66.3
Thecc.02G095400 Theobroma cacao HOM05D006129 ORTHO05D007446 0.0e+00 1080.5 828 66.5
Manes.17G094600 Manihot esculenta HOM05D006129 ORTHO05D007446 2.8e-311 1071.6 836 67.2
Cfa005424 Carpinus fangiana HOM05D006129 ORTHO05D007446 4.3e-310 1067.8 802 67.5
Dinv42121 Davidia involucrata HOM05D006129 ORTHO05D007446 1.6e-309 1065.8 760 71.1
CiPaw.05G055300 Carya illinoinensis HOM05D006129 ORTHO05D007446 1.4e-308 1062.8 801 67.5
Haze_01881 Corylus avellana HOM05D006129 ORTHO05D007446 1.4e-308 1062.8 792 68.1
TWI31G0609 Tripterygium wilfordii HOM05D006129 ORTHO05D007446 1.5e-307 1059.3 810 66.7
TWI79G0519 Tripterygium wilfordii HOM05D006129 ORTHO05D007446 2.0e-307 1058.9 802 68.2
COL.COLO4_11724 Corchorus olitorius HOM05D006129 ORTHO05D007446 3.4e-307 1058.1 740 70.8
GSVIVG01031785001 Vitis vinifera HOM05D006129 ORTHO05D007446 1.1e-305 1053.1 797 67.3
CSS0025307 Camellia sinensis var. sinensis HOM05D006129 ORTHO05D007446 1.6e-301 1039.3 837 65.5
CSS0048591 Camellia sinensis var. sinensis HOM05D006129 ORTHO05D007446 2.1e-301 1038.9 837 65.5
Nn4g23272 Nelumbo nucifera HOM05D006129 ORTHO05D007446 6.1e-301 1037.3 816 64.8
Lj5P206T15 Lonicera japonica HOM05D006129 ORTHO05D007446 5.2e-300 1034.2 772 67.9
Gohir.D01G006000 Gossypium hirsutum HOM05D006129 ORTHO05D007446 2.0e-299 1032.3 814 65.5
CANSAT25G2181 Cannabis sativa HOM05D006129 ORTHO05D007446 1.7e-298 1029.2 805 66.1
Gorai.002G007000 Gossypium raimondii HOM05D006129 ORTHO05D007446 2.2e-298 1028.9 811 65.0
Gohir.A01G005900 Gossypium hirsutum HOM05D006129 ORTHO05D007446 2.0e-296 1022.3 814 65.2
Cpa.g.sc62.53 Carica papaya HOM05D006129 ORTHO05D007446 1.0e-295 1020.0 724 69.8
MD10G1089000 Malus domestica HOM05D006129 ORTHO05D007446 3.9e-295 1018.1 808 65.2
Ciclev10027854m.g Citrus clementina HOM05D006129 ORTHO05D007446 9.5e-294 1013.4 769 66.2
Atru.BG.82.p Acer truncatum HOM05D006129 ORTHO05D007446 1.2e-291 1006.5 662 72.5
RcHm_v2.0_Chr6g0259211 Rosa chinensis HOM05D006129 ORTHO05D007446 2.6e-291 1005.4 776 65.3
FAN27G0179 Fragaria x ananassa HOM05D006129 ORTHO05D007446 7.8e-288 993.8 787 64.2
ClCG07G001810 Citrullus lanatus HOM05D006129 ORTHO05D007446 2.3e-287 992.3 818 62.7
FvH4_2g06900 Fragaria vesca HOM05D006129 ORTHO05D007446 8.6e-287 990.3 689 68.7
MELO3C026699.2 Cucumis melo HOM05D006129 ORTHO05D007446 4.7e-285 984.6 803 62.8
Sed0004701 Sechium edule HOM05D006129 ORTHO05D007446 6.2e-285 984.2 700 67.1
FAN24G2628 Fragaria x ananassa HOM05D006129 ORTHO05D007446 8.9e-284 980.3 689 67.9
Lalb_Chr10g0095451 Lupinus albus HOM05D006129 ORTHO05D007446 8.9e-284 980.3 788 62.4
FAN15G2181 Fragaria x ananassa HOM05D006129 ORTHO05D007446 7.5e-283 977.2 691 68.2
Aqoxy3G03484 Aquilegia oxysepala HOM05D006129 ORTHO05D007446 9.8e-283 976.9 783 63.3
Dinv23594 Davidia involucrata HOM05D006129 ORTHO05D007446 1.7e-282 976.1 781 65.9
Prupe.8G116000 Prunus persica HOM05D006129 ORTHO05D007446 1.9e-281 972.6 779 64.2
CsaV3_3G028800 Cucumis sativus L. HOM05D006129 ORTHO05D007446 4.1e-281 971.5 803 61.4
vmacro02172 Vaccinium macrocarpon HOM05D006129 ORTHO05D007446 2.1e-280 969.1 788 63.2
Lj2g0010354 Lotus japonicus HOM05D006129 ORTHO05D007446 1.7e-279 966.1 751 64.0
Ca_13480_v3 Cicer arietinum L. HOM05D006129 ORTHO05D007446 2.3e-279 965.7 770 62.1
Medtr1g026035 Medicago truncatula HOM05D006129 ORTHO05D007446 3.3e-278 961.8 712 64.5
DCAR_003623 Daucus carota HOM05D006129 ORTHO05D007446 1.2e-277 959.9 755 63.3
Rhsim11G0169300 Rhododendron simsii HOM05D006129 ORTHO05D007446 3.6e-277 958.4 797 62.2
Glyma.20G009700 Glycine max HOM05D006129 ORTHO05D007446 2.3e-276 955.7 681 66.4
PGR042G1055 Punica granatum HOM05D006129 ORTHO05D007446 9.9e-275 950.3 765 63.3
Glyma.07G178800 Glycine max HOM05D006129 ORTHO05D007446 3.8e-274 948.3 693 64.6
TPR.G26422 Trifolium pratense HOM05D006129 ORTHO05D007446 8.4e-274 947.2 753 62.2
TAR371G0476 Trochodendron aralioides HOM05D006129 ORTHO05D007446 3.2e-273 945.3 741 66.0
VMungo0464G0688 Vigna mungo HOM05D006129 ORTHO05D007446 1.3e-271 939.9 687 65.1
Sc08g0000140 Simmondsia chinensis HOM05D006129 ORTHO05D007446 3.0e-271 938.7 785 61.5
arahy.Tifrunner.gnm1.ann1.769PPM Arachis hypogaea HOM05D006129 ORTHO05D007446 6.6e-271 937.6 759 62.2
THA.LOC104807348 Tarenaya hassleriana HOM05D006129 ORTHO05D007446 3.3e-270 935.3 736 63.2
Phvul.002G308800 Phaseolus vulgaris HOM05D006129 ORTHO05D007446 1.1e-268 930.2 693 65.5
Eucgr.L01320 Eucalyptus grandis HOM05D006129 ORTHO05D007446 2.0e-267 926.0 810 59.5
Oeu057674.1 Olea europaea HOM05D006129 ORTHO05D007446 8.4e-266 920.6 823 59.4
Thhalv10022548m.g Eutrema salsugineum HOM05D006129 ORTHO05D007446 8.7e-263 910.6 789 58.0
Peaxi162Scf00789g00530 Petunia axillaris HOM05D006129 ORTHO05D007446 8.7e-263 910.6 830 58.2
Nitab4.5_0007303g0010 Nicotiana tabacum HOM05D006129 ORTHO05D007446 2.1e-261 906.0 797 59.2
Carub.0003s2972 Capsella rubella HOM05D006129 ORTHO05D007446 1.8e-260 902.9 718 61.8
Lsat_1_v5_gn_5_113460 Lactuca sativa HOM05D006129 ORTHO05D007446 1.8e-260 902.9 806 58.2
Nitab4.5_0001453g0090 Nicotiana tabacum HOM05D006129 ORTHO05D007446 6.9e-260 901.0 823 57.4
AL3G47590 Arabidopsis lyrata HOM05D006129 ORTHO05D007446 2.0e-259 899.4 743 60.2
CARHR106180 Cardamine hirsuta HOM05D006129 ORTHO05D007446 1.7e-258 896.3 729 60.4
Actinidia12976 Actinidia chinensis HOM05D006129 ORTHO05D007446 2.2e-258 896.0 841 58.0
Sp3g29130 Schrenkiella parvula HOM05D006129 ORTHO05D007446 2.2e-258 896.0 724 61.6
AT2G15820 Arabidopsis thaliana HOM05D006129 ORTHO05D007446 2.9e-258 895.6 752 59.7
A07p04960 Brassica napus HOM05D006129 ORTHO05D007446 1.9e-257 892.9 658 63.7
CAN.G644.34 Capsicum annuum HOM05D006129 ORTHO05D007446 2.1e-256 889.4 702 64.0
BraA07t28289Z Brassica rapa HOM05D006129 ORTHO05D007446 7.9e-256 887.5 658 63.5
Solyc11g066850.3 Solanum lycopersicum HOM05D006129 ORTHO05D007446 7.9e-256 887.5 746 60.7
BcaC06g36090 Brassica carinata HOM05D006129 ORTHO05D007446 1.3e-255 886.7 784 56.2
C07p07940 Brassica napus HOM05D006129 ORTHO05D007446 1.3e-255 886.7 784 56.2
BolC7t41212H Brassica oleracea HOM05D006129 ORTHO05D007446 1.3e-255 886.7 784 56.2
BcaB03g16332 Brassica carinata HOM05D006129 ORTHO05D007446 5.1e-255 884.8 717 60.0
ECA234G4125 Erigeron canadensis HOM05D006129 ORTHO05D007446 3.7e-253 878.6 781 57.0
HanXRQChr10g0303221 Helianthus annuus HOM05D006129 ORTHO05D007446 6.2e-253 877.9 791 56.6
MSTRG.20134 Avicennia marina HOM05D006129 ORTHO05D007446 9.3e-249 864.0 724 59.8
Aa31LG8G13380 Aethionema arabicum HOM05D006129 ORTHO05D007446 3.0e-247 859.0 728 58.8
EL10Ac9g21818 Beta vulgaris HOM05D006129 ORTHO05D007446 6.7e-247 857.8 776 55.3
Migut.B00306 Erythranthe guttata HOM05D006129 ORTHO05D007446 5.6e-246 854.7 741 57.2
FAN20G2787 Fragaria x ananassa HOM05D006129 ORTHO05D007446 1.2e-243 847.0 621 67.0
Ah.01g006750 Amaranthus hybridus HOM05D006129 ORTHO05D007446 1.0e-242 844.0 821 52.1
AUR62011424 Chenopodium quinoa HOM05D006129 ORTHO05D007446 2.2e-242 842.8 791 54.2
PGSC0003DMG400026525 Solanum tuberosum HOM05D006129 ORTHO05D007446 4.2e-241 838.6 657 63.3
Sopen11g026560 Solanum pennellii HOM05D006129 ORTHO05D007446 5.7e-238 828.2 663 62.6
unitig_744.g24241 Utricularia gibba HOM05D006129 ORTHO05D007446 3.9e-231 805.4 737 54.5
SGA_v2.0_scaffold58G20604 Striga asiatica HOM05D006129 ORTHO05D007446 7.4e-230 801.2 817 51.2
Zm00001eb251880 Zea mays HOM05D006129 ORTHO05D007446 3.1e-228 795.8 690 57.4
ATR0665G475 Amborella trichopoda HOM05D006129 ORTHO05D007446 1.5e-227 793.5 706 56.2
HPP92_022045 Vanilla planifolia HOM05D006129 ORTHO05D007446 7.7e-227 791.2 731 54.2
Os02g0702000 Oryza sativa ssp. japonica HOM05D006129 ORTHO05D007446 1.8e-223 780.0 697 53.8
TAR629G1168 Trochodendron aralioides HOM05D006129 ORTHO05D007446 7.4e-222 774.6 550 69.5
AUR62016636 Chenopodium quinoa HOM05D006129 ORTHO05D007446 1.3e-221 773.9 675 55.9
Medtr0381s0010 Medicago truncatula HOM05D006129 ORTHO05D007446 1.3e-221 773.9 610 62.1
Eucgr.G01504 Eucalyptus grandis HOM05D006129 ORTHO05D007446 1.2e-200 704.1 815 49.8
SEGI_31419 Sequoiadendron giganteum HOM05D006129 ORTHO05D007446 2.3e-183 646.7 685 47.9
CDE04G1903 Ceratophyllum demersum HOM05D006129 ORTHO05D007446 1.5e-182 644.0 721 48.0
Eucgr.L00820 Eucalyptus grandis HOM05D006129 ORTHO05D007446 1.2e-179 634.4 566 58.7
Psat6g001360 Pisum sativum HOM05D006129 ORTHO05D007446 1.8e-175 620.5 799 44.1
Cc02_g18440 Coffea canephora HOM05D006129 ORTHO05D007446 3.6e-152 543.1 472 59.1
Hund00318 Selenicereus undatus HOM05D006129 ORTHO05D007446 8.1e-144 515.4 429 59.4
Atru.chr5.2887 Acer truncatum HOM05D006129 ORTHO05D007446 4.3e-129 466.5 530 49.4
TAR371G0992 Trochodendron aralioides HOM05D006129 ORTHO05D007446 1.2e-118 431.8 768 38.0
Atru.chr5.2823 Acer truncatum HOM05D006129 ORTHO05D007446 4.8e-112 409.8 492 48.2
QL11p038542 Quercus lobata HOM05D006129 ORTHO05D007446 1.1e-108 398.7 304 65.8
TAR371G0058 Trochodendron aralioides HOM05D006129 ORTHO05D007446 5.5e-100 369.8 380 55.3
Pp3c25_10050 Physcomitrium patens HOM05D006129 ORTHO05D007446 1.2e-99 368.6 680 34.4
Atru.chr5.2881 Acer truncatum HOM05D006129 ORTHO05D007446 9.7e-89 332.4 311 56.6
Atru.chr5.2826 Acer truncatum HOM05D006129 ORTHO05D007446 1.8e-87 328.2 372 51.9
SMO356G0628 Selaginella moellendorffii HOM05D006129 ORTHO05D007446 1.9e-76 291.6 704 28.0
AagrBONN_evm.TU.Sc2ySwM_344.1734 Anthoceros agrestis HOM05D006129 ORTHO05D007446 2.5e-76 291.2 662 29.0
Mapoly0036s0055 Marchantia polymorpha HOM05D006129 ORTHO05D007446 3.9e-69 267.3 760 26.6
AagrBONN_evm.TU.Sc2ySwM_344.5085 Anthoceros agrestis HOM05D006129 ORTHO05D007446 1.1e-58 232.6 703 26.3
TAR629G1760 Trochodendron aralioides HOM05D006129 ORTHO05D007446 5.8e-57 226.9 215 56.3
arahy.Tifrunner.gnm1.ann1.SUMB0F Arachis hypogaea HOM05D006129 ORTHO05D007446 4.4e-49 200.7 182 58.8
Pp3c16_23700 Physcomitrium patens HOM05D006129 ORTHO05D007446 3.7e-48 197.6 687 25.0
Cc02_g18430 Coffea canephora HOM05D006129 ORTHO05D007446 2.1e-43 181.8 191 53.4
Atru.chr5.2882 Acer truncatum HOM05D006129 ORTHO05D007446 2.4e-34 151.8 198 44.9
QL11p038477 Quercus lobata HOM05D006129 ORTHO05D007446 1.2e-25 122.9 168 46.4
Atru.chr5.2820 Acer truncatum HOM05D006129 ORTHO05D007446 4.5e-17 94.4 81 56.8
CBR_g8924 Chara braunii HOM05D006129 ORTHO05D007446 6.5e-16 90.5 731 18.9
CBR_g19584 Chara braunii HOM05D006129 ORTHO05D007446 1.3e-13 82.8 610 18.5
RcHm_v2.0_Chr6g0302241 Rosa chinensis HOM05D006129 ORTHO05D007446 2.3e-13 82.0 50 72.0
RcHm_v2.0_Chr1g0376021 Rosa chinensis HOM05D006129 ORTHO05D007446 2.8e-11 75.1 51 66.7
TAR371G0388 Trochodendron aralioides HOM05D001464 ORTHO05D002836 3.7e-11 74.7 55 69.1
RcHm_v2.0_Chr2g0152801 Rosa chinensis HOM05D006129 ORTHO05D007446 6.2e-11 73.9 59 62.7
CANSAT01G2728 Cannabis sativa HOM05D000001 ORTHO05D000003 1.7e-08 65.9 322 21.7
AagrBONN_evm.TU.Sc2ySwM_344.5235 Anthoceros agrestis HOM05D000001 ORTHO05D000003 5.0e-08 64.3 202 25.2
Aa31sc13G80 Aethionema arabicum HOM05D006354 ORTHO05D007773 2.5e-07 62.0 425 19.5
AagrBONN_evm.TU.Sc2ySwM_228.1156 Anthoceros agrestis HOM05D000001 ORTHO05D000003 3.2e-07 61.6 231 25.5
DCAR_017247 Daucus carota HOM05D000891 ORTHO05D000761 3.2e-07 61.6 315 21.9
FAN17G1880 Fragaria x ananassa HOM05D006414 ORTHO05D007780 7.1e-07 60.5 110 29.1
Nitab4.5_0004523g0010 Nicotiana tabacum HOM05D000300 ORTHO05D000383 7.1e-07 60.5 232 25.4
AagrBONN_evm.TU.Sc2ySwM_369.112 Anthoceros agrestis HOM05D000001 ORTHO05D000003 9.3e-07 60.1 377 21.8
CiPaw.01G035200 Carya illinoinensis HOM05D000891 ORTHO05D000761 9.3e-07 60.1 307 22.1
Solyc02g085650.4 Solanum lycopersicum HOM05D001985 ORTHO05D000761 1.6e-06 59.3 307 22.5
AagrBONN_evm.TU.Sc2ySwM_117.4125 Anthoceros agrestis HOM05D000001 ORTHO05D000003 4.6e-06 57.8 263 19.8
CiPaw.13G024800 Carya illinoinensis HOM05D000300 ORTHO05D000383 4.6e-06 57.8 164 26.8
Eucgr.C02463 Eucalyptus grandis HOM05D005973 ORTHO05D007285 4.6e-06 57.8 347 22.2
AagrBONN_evm.TU.Sc2ySwM_117.4077 Anthoceros agrestis HOM05D000001 ORTHO05D000003 6.1e-06 57.4 376 20.5
AagrBONN_evm.TU.Sc2ySwM_228.986 Anthoceros agrestis HOM05D000001 ORTHO05D000003 7.9e-06 57.0 352 21.0
Prupe.1G479200 Prunus persica HOM05D000001 ORTHO05D000003 7.9e-06 57.0 203 26.1


User provided reference genes

Program Settings