Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G009100 Populus trichocarpa HOM05D003850 ORTHO05D004515 4.5e-268 927.5 540 100.0
Sabra06G0006900 Salix brachista HOM05D003850 ORTHO05D004515 3.3e-226 788.5 541 86.0
Potri.016G015100 Populus trichocarpa HOM05D003850 ORTHO05D004515 2.1e-212 742.7 538 83.3
QL05p069776 Quercus lobata HOM05D003850 ORTHO05D004515 4.7e-209 731.5 543 80.3
Ciclev10014841m.g Citrus clementina HOM05D003850 ORTHO05D004515 1.7e-206 723.0 542 80.3
Atru.chr1.2461 Acer truncatum HOM05D003850 ORTHO05D004515 7.1e-205 717.6 543 78.1
Sabra16G0017100 Salix brachista HOM05D003850 ORTHO05D004515 4.8e-201 704.9 569 74.2
Duzib160G0220 Durio zibethinus HOM05D003850 ORTHO05D004515 1.5e-199 699.9 554 76.4
CSS0032808 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 7.9e-196 687.6 539 72.5
CiPaw.09G102000 Carya illinoinensis HOM05D003850 ORTHO05D004515 3.9e-195 685.3 542 76.2
CANSAT56G0590 Cannabis sativa HOM05D003850 ORTHO05D004515 5.1e-195 684.9 542 74.9
Nn1g03331 Nelumbo nucifera HOM05D003850 ORTHO05D004515 1.9e-194 682.9 543 75.3
Sabra16G0000900 Salix brachista HOM05D003850 ORTHO05D004515 2.8e-193 679.1 547 70.0
TAR624G0821 Trochodendron aralioides HOM05D003850 ORTHO05D004515 4.8e-193 678.3 543 75.5
Manes.07G088900 Manihot esculenta HOM05D003850 ORTHO05D004515 8.1e-193 677.6 538 78.1
Eucgr.E03951 Eucalyptus grandis HOM05D003850 ORTHO05D004515 1.5e-191 673.3 545 74.3
Thecc.06G232700 Theobroma cacao HOM05D003850 ORTHO05D004515 4.9e-190 668.3 553 73.8
GSVIVG01003352001 Vitis vinifera HOM05D003850 ORTHO05D004515 1.6e-188 663.3 542 77.7
Aqoxy1G04110 Aquilegia oxysepala HOM05D003850 ORTHO05D004515 3.5e-188 662.1 549 69.9
CSS0007684 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 4.6e-188 661.8 546 73.8
arahy.Tifrunner.gnm1.ann1.C17RPB Arachis hypogaea HOM05D003850 ORTHO05D004515 7.9e-188 661.0 545 72.3
TAR629G2665 Trochodendron aralioides HOM05D003850 ORTHO05D004515 3.9e-187 658.7 539 74.4
MSTRG.7170 Avicennia marina HOM05D003850 ORTHO05D004515 1.5e-186 656.8 542 74.5
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 4.8e-185 651.7 541 75.0
VMungo1215G3075 Vigna mungo HOM05D003850 ORTHO05D004515 8.2e-185 651.0 544 75.2
THA.LOC104812992 Tarenaya hassleriana HOM05D003850 ORTHO05D004515 1.4e-184 650.2 548 71.2
RhsimUnG0025700 Rhododendron simsii HOM05D003850 ORTHO05D004515 1.2e-183 647.1 589 70.5
RhsimUnG0028500 Rhododendron simsii HOM05D003850 ORTHO05D004515 1.2e-183 647.1 589 70.5
arahy.Tifrunner.gnm1.ann1.IIR6TV Arachis hypogaea HOM05D003850 ORTHO05D004515 1.3e-182 643.7 552 70.3
SalBow8G5272 Salvia bowleyana HOM05D003850 ORTHO05D004515 1.1e-181 640.6 554 73.1
Cc09_g00920 Coffea canephora HOM05D003850 ORTHO05D004515 1.4e-181 640.2 542 74.9
Sed0003006 Sechium edule HOM05D003850 ORTHO05D004515 7.9e-180 634.4 545 72.8
Prupe.4G011300 Prunus persica HOM05D003850 ORTHO05D004515 2.3e-179 632.9 543 71.6
PSO210G4264 Papaver somniferum HOM05D003850 ORTHO05D004515 3.9e-179 632.1 546 71.2
Glyma.09G009900 Glycine max HOM05D003850 ORTHO05D004515 6.7e-179 631.3 546 70.7
Gohir.A06G153120 Gossypium hirsutum HOM05D003850 ORTHO05D004515 7.4e-178 627.9 553 74.0
Gorai.010G186300 Gossypium raimondii HOM05D003850 ORTHO05D004515 1.3e-177 627.1 553 74.1
Phvul.006G143600 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 1.6e-177 626.7 545 69.9
VMungo0540G1287 Vigna mungo HOM05D003850 ORTHO05D004515 2.2e-177 626.3 544 69.9
CsaV3_3G028740 Cucumis sativus L. HOM05D003850 ORTHO05D004515 3.7e-177 625.5 541 73.0
Sopen11g006940 Solanum pennellii HOM05D003850 ORTHO05D004515 6.3e-177 624.8 540 69.6
Migut.M01390 Erythranthe guttata HOM05D003850 ORTHO05D004515 8.2e-177 624.4 540 68.9
Phvul.003G083500 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 8.2e-177 624.4 544 74.1
Nitab4.5_0001198g0010 Nicotiana tabacum HOM05D003850 ORTHO05D004515 2.4e-176 622.9 532 71.2
Ca_00718_v3 Cicer arietinum L. HOM05D003850 ORTHO05D004515 5.3e-176 621.7 546 67.8
Gohir.D06G159600 Gossypium hirsutum HOM05D003850 ORTHO05D004515 9.0e-176 620.9 553 73.8
PGR102G0753 Punica granatum HOM05D003850 ORTHO05D004515 2.0e-175 619.8 542 71.8
ECA233G3046 Erigeron canadensis HOM05D003850 ORTHO05D004515 2.9e-174 615.9 548 73.4
vmacro15772 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 6.5e-174 614.8 554 72.2
Cfa000110 Carpinus fangiana HOM05D003850 ORTHO05D004515 2.7e-172 609.4 544 73.2
MBI16_g42266_MAGBIO Magnolia biondii HOM05D003850 ORTHO05D004515 2.7e-172 609.4 545 69.5
Oeu002760.2 Olea europaea HOM05D003850 ORTHO05D004515 2.7e-172 609.4 576 68.9
ClCG07G001740 Citrullus lanatus HOM05D003850 ORTHO05D004515 2.2e-169 599.7 542 71.0
Lalb_Chr20g0119201 Lupinus albus HOM05D003850 ORTHO05D004515 1.1e-168 597.4 550 65.8
TPR.G3343 Trifolium pratense HOM05D003850 ORTHO05D004515 2.4e-168 596.3 567 67.0
SGA_v2.0_scaffold4G01878 Striga asiatica HOM05D003850 ORTHO05D004515 9.1e-168 594.3 527 72.5
AL6G47570 Arabidopsis lyrata HOM05D003850 ORTHO05D004515 2.0e-167 593.2 547 71.3
arahy.Tifrunner.gnm1.ann1.97WSNQ Arachis hypogaea HOM05D003850 ORTHO05D004515 3.4e-167 592.4 555 68.3
COL.COLO4_31876 Corchorus olitorius HOM05D003850 ORTHO05D004515 7.7e-167 591.3 551 67.2
Cpa.g.sc75.120 Carica papaya HOM05D003850 ORTHO05D004515 2.2e-166 589.7 542 72.7
Haze_08659 Corylus avellana HOM05D003850 ORTHO05D004515 2.9e-166 589.3 581 65.7
CiPaw.10G077600 Carya illinoinensis HOM05D003850 ORTHO05D004515 5.0e-166 588.6 492 69.5
arahy.Tifrunner.gnm1.ann1.0C9QHL Arachis hypogaea HOM05D003850 ORTHO05D004515 9.4e-165 584.3 556 69.1
Medtr2g025590 Medicago truncatula HOM05D003850 ORTHO05D004515 3.0e-163 579.3 542 70.7
PSO302G0165 Papaver somniferum HOM05D003850 ORTHO05D004515 5.1e-163 578.6 545 68.1
HPP92_001629 Vanilla planifolia HOM05D003850 ORTHO05D004515 1.1e-162 577.4 539 63.3
Aa31LG9G10040 Aethionema arabicum HOM05D003850 ORTHO05D004515 5.7e-162 575.1 566 68.6
ATR0751G086 Amborella trichopoda HOM05D003850 ORTHO05D004515 9.7e-162 574.3 550 66.4
Glyma.15G114200 Glycine max HOM05D003850 ORTHO05D004515 1.3e-161 573.9 545 65.5
Nitab4.5_0000143g0310 Nicotiana tabacum HOM05D003850 ORTHO05D004515 6.9e-160 568.2 532 67.9
AT4G12610 Arabidopsis thaliana HOM05D003850 ORTHO05D004515 9.1e-160 567.8 547 69.8
PGSC0003DMG400013344 Solanum tuberosum HOM05D003850 ORTHO05D004515 2.0e-159 566.6 503 69.6
MD05G1357300 Malus domestica HOM05D003850 ORTHO05D004515 7.7e-159 564.7 548 67.9
Solyc11g012150.3 Solanum lycopersicum HOM05D003850 ORTHO05D004515 3.2e-157 559.3 503 69.0
Lj2A262G45 Lonicera japonica HOM05D003850 ORTHO05D004515 4.2e-157 558.9 516 71.7
Lj4g0025543 Lotus japonicus HOM05D003850 ORTHO05D004515 4.2e-157 558.9 547 65.4
Peaxi162Scf00558g00516 Petunia axillaris HOM05D003850 ORTHO05D004515 1.6e-156 557.0 484 72.9
Carub.0006s3188 Capsella rubella HOM05D003850 ORTHO05D004515 2.1e-156 556.6 549 68.5
SHI24464 Sapria himalayana HOM05D003850 ORTHO05D004515 2.1e-156 556.6 537 63.3
HanXRQChr15g0470091 Helianthus annuus HOM05D003850 ORTHO05D004515 4.7e-156 555.4 527 71.9
AUR62021872 Chenopodium quinoa HOM05D003850 ORTHO05D004515 8.0e-156 554.7 546 60.3
SEGI_18521 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 1.8e-155 553.5 552 64.1
C03p36090 Brassica napus HOM05D003850 ORTHO05D004515 3.9e-155 552.4 548 68.6
BcaC01g04577 Brassica carinata HOM05D003850 ORTHO05D004515 2.0e-154 550.1 550 68.4
BolC3t15918H Brassica oleracea HOM05D003850 ORTHO05D004515 2.0e-154 550.1 550 68.4
FAN25G3770 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.7e-153 547.0 584 59.9
TWI63G0294 Tripterygium wilfordii HOM05D003850 ORTHO05D004515 8.2e-153 544.7 514 69.5
A03p29830 Brassica napus HOM05D003850 ORTHO05D004515 4.1e-152 542.3 548 67.9
FvH4_3g01042 Fragaria vesca HOM05D003850 ORTHO05D004515 1.6e-151 540.4 558 60.9
BraA03t12173Z Brassica rapa HOM05D003850 ORTHO05D004515 3.5e-151 539.3 550 67.3
CARHR253560 Cardamine hirsuta HOM05D003850 ORTHO05D004515 5.5e-149 531.9 543 67.4
Lj6g0013016 Lotus japonicus HOM05D003850 ORTHO05D004515 1.2e-148 530.8 547 66.7
BcaB01g01757 Brassica carinata HOM05D003850 ORTHO05D004515 9.7e-146 521.2 535 64.7
CAN.G1186.28 Capsicum annuum HOM05D003850 ORTHO05D004515 1.7e-145 520.4 545 62.2
MD10G1331000 Malus domestica HOM05D003850 ORTHO05D004515 1.4e-144 517.3 524 66.0
RcHm_v2.0_Chr5g0001581 Rosa chinensis HOM05D003850 ORTHO05D004515 3.1e-144 516.2 561 62.2
FAN21G1422 Fragaria x ananassa HOM05D003850 ORTHO05D004515 4.1e-144 515.8 576 58.0
Sp6g04900 Schrenkiella parvula HOM05D003850 ORTHO05D004515 5.3e-144 515.4 546 66.7
Thhalv10028564m.g Eutrema salsugineum HOM05D003850 ORTHO05D004515 1.0e-142 511.1 543 65.4
PSO339G3925 Papaver somniferum HOM05D003850 ORTHO05D004515 2.9e-142 509.6 550 62.9
vmacro03646 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 2.9e-142 509.6 565 57.0
Actinidia39269 Actinidia chinensis HOM05D003850 ORTHO05D004515 5.0e-142 508.8 359 77.2
Lsat_1_v5_gn_7_13561 Lactuca sativa HOM05D003850 ORTHO05D004515 3.6e-140 502.7 497 70.8
unitig_748.g7103 Utricularia gibba HOM05D003850 ORTHO05D004515 4.7e-140 502.3 537 60.5
BolC9t56221H Brassica oleracea HOM05D003850 ORTHO05D004515 2.3e-139 500.0 545 63.5
BcaB01g02623 Brassica carinata HOM05D003850 ORTHO05D004515 8.3e-137 491.5 536 63.8
Oeu044421.3 Olea europaea HOM05D003850 ORTHO05D004515 1.8e-136 490.3 835 43.5
EL10Ac8g20176 Beta vulgaris HOM05D003850 ORTHO05D004515 2.7e-135 486.5 550 64.0
MELO3C012788.2 Cucumis melo HOM05D003850 ORTHO05D004515 6.5e-134 481.9 465 70.5
Zm00001eb224360 Zea mays HOM05D003850 ORTHO05D004515 1.1e-133 481.1 488 65.4
BraA09t38246Z Brassica rapa HOM05D003850 ORTHO05D004515 1.5e-133 480.7 549 58.3
CDE04G2591 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 1.2e-132 477.6 542 59.4
Hund23984 Selenicereus undatus HOM05D003850 ORTHO05D004515 4.4e-130 469.2 560 60.0
RhsimUnG0109100 Rhododendron simsii HOM05D003850 ORTHO05D004515 9.8e-130 468.0 532 58.1
Lj8A171G42 Lonicera japonica HOM05D003850 ORTHO05D004515 2.2e-129 466.8 543 52.9
A09p26740 Brassica napus HOM05D003850 ORTHO05D004515 4.3e-125 452.6 541 56.2
Psat1g176560 Pisum sativum HOM05D003850 ORTHO05D004515 1.6e-124 450.7 469 68.9
BcaC04g21251 Brassica carinata HOM05D003850 ORTHO05D004515 1.0e-123 448.0 537 58.8
C09p33830 Brassica napus HOM05D003850 ORTHO05D004515 1.0e-123 448.0 537 58.8
Rhsim13G0146600 Rhododendron simsii HOM05D003850 ORTHO05D004515 3.4e-122 443.0 586 52.7
Duzib235G1223 Durio zibethinus HOM05D003850 ORTHO05D004515 9.2e-120 434.9 412 72.8
Mapoly0105s0015 Marchantia polymorpha HOM05D003850 ORTHO05D004515 2.3e-115 420.2 549 50.6
Pp3c3_2280 Physcomitrium patens HOM05D003850 ORTHO05D004515 5.4e-112 409.1 558 52.0
Zm00001eb398520 Zea mays HOM05D003850 ORTHO05D004515 1.0e-110 404.8 538 47.4
RcHm_v2.0_Chr5g0007791 Rosa chinensis HOM05D003850 ORTHO05D004515 6.6e-110 402.1 553 51.4
CDE06G1774 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 3.3e-109 399.8 325 66.8
QL09p006300 Quercus lobata HOM05D003850 ORTHO05D004515 4.7e-108 396.0 364 76.4
FvH4_2g22070 Fragaria vesca HOM05D003850 ORTHO05D004515 1.6e-103 380.9 552 46.4
DCAR_025996 Daucus carota HOM05D003850 ORTHO05D004515 1.0e-102 378.3 442 63.8
FAN24G0125 Fragaria x ananassa HOM05D003850 ORTHO05D008045 2.5e-101 373.6 552 46.4
AUR62012783 Chenopodium quinoa HOM05D003850 ORTHO05D004515 1.5e-98 364.4 425 56.7
Medtr2g025620 Medicago truncatula HOM05D003850 ORTHO05D004515 2.6e-98 363.6 522 55.6
FAN11G3915 Fragaria x ananassa HOM05D003850 ORTHO05D004515 9.9e-98 361.7 552 46.0
FAN03G2951 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.3e-97 361.3 550 46.2
FAN16G3024 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.7e-97 360.9 549 45.9
FvH4_3g04782 Fragaria vesca HOM05D003850 ORTHO05D004515 2.2e-97 360.5 549 46.3
FAN21G1676 Fragaria x ananassa HOM05D003850 ORTHO05D004515 2.4e-96 357.1 550 46.0
Dinv07398 Davidia involucrata HOM05D003850 ORTHO05D004515 5.6e-93 345.9 321 78.5
TPR.G34491 Trifolium pratense HOM05D003850 ORTHO05D004515 2.3e-86 323.9 195 77.4
AagrBONN_evm.TU.Sc2ySwM_228.4136 Anthoceros agrestis HOM05D003850 ORTHO05D004515 1.1e-83 315.1 353 54.7
TPR.G13041 Trifolium pratense HOM05D003850 ORTHO05D004515 6.0e-79 299.3 367 66.2
Sc17g0007710 Simmondsia chinensis HOM05D003850 ORTHO05D004515 8.4e-73 278.9 371 65.2
Peaxi162Scf00015g02110 Petunia axillaris HOM05D003850 ORTHO05D004515 8.7e-70 268.9 312 57.1
SEGI_38016 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 6.0e-63 246.1 334 47.0
Actinidia11880 Actinidia chinensis HOM05D003850 ORTHO05D004515 1.1e-61 241.9 291 55.3
FAN25G2646 Fragaria x ananassa HOM05D003850 ORTHO05D004515 6.9e-59 232.6 507 38.1
HPP92_001646 Vanilla planifolia HOM05D003850 ORTHO05D004515 1.7e-57 228.0 244 63.9
Gorai.002G145900 Gossypium raimondii HOM05D003850 ORTHO05D004515 1.0e-41 175.6 176 77.8
Lsat_1_v5_gn_5_64561 Lactuca sativa HOM05D003952 ORTHO05D004515 9.4e-40 169.1 165 70.9
CBR_g38333 Chara braunii HOM05D000019 ORTHO05D000002 4.8e-36 156.8 244 42.6
HPP92_001645 Vanilla planifolia HOM05D003850 ORTHO05D004515 4.8e-36 156.8 100 71.0
PSO339G5270 Papaver somniferum HOM05D003850 ORTHO05D004515 3.5e-34 150.6 212 51.9
PSO384G4333 Papaver somniferum HOM05D003850 ORTHO05D004515 4.8e-28 130.2 170 55.9
Gohir.D01G119450 Gossypium hirsutum HOM05D003850 ORTHO05D004515 1.1e-24 119.0 101 76.2
CDE06G0619 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 9.4e-24 115.9 208 47.6
RcHm_v2.0_Chr6g0288941 Rosa chinensis HOM05D003850 ORTHO05D004515 8.0e-23 112.8 293 35.8
TAR629G2548 Trochodendron aralioides HOM05D003850 ORTHO05D004515 3.0e-22 110.9 315 30.8
AagrBONN_evm.TU.Sc2ySwM_228.3786 Anthoceros agrestis HOM05D003850 ORTHO05D004515 2.0e-21 108.2 140 41.4
HPP92_001647 Vanilla planifolia HOM05D003850 ORTHO05D004515 2.8e-20 104.4 109 58.7
Lsat_1_v5_gn_3_78300 Lactuca sativa HOM05D002115 ORTHO05D002263 2.4e-19 101.3 57 84.2
AagrBONN_evm.TU.Sc2ySwM_228.3787 Anthoceros agrestis HOM05D003850 ORTHO05D004515 4.1e-19 100.5 247 36.8
VMungo0720G0179 Vigna mungo HOM05D003850 ORTHO05D004515 5.0e-17 93.6 51 82.4
SEGI_29277 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 6.6e-17 93.2 207 38.2
arahy.Tifrunner.gnm1.ann1.4A53N1 Arachis hypogaea HOM05D003850 ORTHO05D004515 8.6e-17 92.8 98 57.1
arahy.Tifrunner.gnm1.ann1.5H9H8Z Arachis hypogaea HOM05D003850 ORTHO05D004515 1.1e-16 92.4 117 51.3
Eucgr.A01650 Eucalyptus grandis HOM05D002251 ORTHO05D004515 2.8e-15 87.8 54 66.7
arahy.Tifrunner.gnm1.ann1.N7GRQP Arachis hypogaea HOM05D003850 ORTHO05D004515 1.8e-14 85.1 76 61.8
arahy.Tifrunner.gnm1.ann1.UE8YUV Arachis hypogaea HOM05D003850 ORTHO05D004515 1.8e-14 85.1 76 61.8
Nitab4.5_0006771g0010 Nicotiana tabacum HOM05D003850 ORTHO05D004515 7.5e-13 79.7 97 53.6
Nitab4.5_0013082g0020 Nicotiana tabacum HOM05D003850 ORTHO05D004515 9.8e-13 79.3 95 52.6
FAN21G0780 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.3e-12 79.0 210 38.6
CAN.G1186.27 Capsicum annuum HOM05D001620 ORTHO05D005461 1.2e-10 72.4 59 55.9
Aqoxy1G04111 Aquilegia oxysepala HOM05D004257 ORTHO05D004515 5.9e-10 70.1 102 43.1
CARHR253550 Cardamine hirsuta HOM05D003850 ORTHO05D004515 2.9e-09 67.8 64 54.7
SEGI_19210 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 6.6e-09 66.6 130 30.8
arahy.Tifrunner.gnm1.ann1.GFC3N0 Arachis hypogaea HOM05D003850 ORTHO05D004515 4.3e-08 63.9 80 47.5
PSO339G0182 Papaver somniferum HOM05D009217 ORTHO05D009626 4.3e-08 63.9 185 33.5
Aa31LG9G10030 Aethionema arabicum HOM05D003850 ORTHO05D004515 2.1e-07 61.6 53 58.5
CBR_g38329 Chara braunii HOM05D003850 ORTHO05D004515 2.1e-07 61.6 116 35.3


User provided reference genes

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