Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G058400 Populus trichocarpa HOM05D003686 ORTHO05D004322 1.3e-106 389.8 203 100.0
Sabra03G0032800 Salix brachista HOM05D003686 ORTHO05D004322 2.1e-85 319.3 186 89.2
Manes.01G213100 Manihot esculenta HOM05D003686 ORTHO05D004322 5.0e-79 298.1 210 78.1
Eucgr.A00286 Eucalyptus grandis HOM05D003686 ORTHO05D004322 1.7e-74 283.1 209 73.7
Atru.chr5.1287 Acer truncatum HOM05D003686 ORTHO05D004322 1.2e-72 276.9 207 75.8
TAR636G2878 Trochodendron aralioides HOM05D003686 ORTHO05D004322 1.2e-72 276.9 207 72.0
QL07p015848 Quercus lobata HOM05D003686 ORTHO05D004322 1.6e-72 276.6 208 71.6
QL04p005272 Quercus lobata HOM05D003686 ORTHO05D004322 2.7e-72 275.8 208 70.7
QL93p0358_0011 Quercus lobata HOM05D003686 ORTHO05D004322 7.8e-72 274.2 208 74.0
Haze_04804 Corylus avellana HOM05D003686 ORTHO05D004322 3.0e-71 272.3 204 71.1
TWI14G0352 Tripterygium wilfordii HOM05D003686 ORTHO05D004322 5.1e-71 271.6 202 72.8
CiPaw.07G099200 Carya illinoinensis HOM05D003686 ORTHO05D004322 2.8e-69 265.8 203 70.9
Gorai.004G053600 Gossypium raimondii HOM05D003686 ORTHO05D004322 3.1e-68 262.3 204 72.5
COL.COLO4_08036 Corchorus olitorius HOM05D003686 ORTHO05D004322 4.0e-68 261.9 208 71.2
Glyma.10G021900 Glycine max HOM05D003686 ORTHO05D004322 4.0e-68 261.9 209 67.5
VMungo0720G0802 Vigna mungo HOM05D003686 ORTHO05D004322 6.8e-68 261.2 207 69.1
TAR362G1277 Trochodendron aralioides HOM05D003686 ORTHO05D004322 1.3e-66 256.9 200 69.0
TAR365G0683 Trochodendron aralioides HOM05D003686 ORTHO05D004322 2.2e-66 256.1 207 66.2
Gohir.D11G123300 Gossypium hirsutum HOM05D003686 ORTHO05D004322 4.9e-66 255.0 209 66.5
Gohir.A08G043900 Gossypium hirsutum HOM05D003686 ORTHO05D004322 2.4e-65 252.7 204 69.1
CANSAT78G2257 Cannabis sativa HOM05D003686 ORTHO05D004322 3.2e-65 252.3 214 67.3
Rhsim13G0017700 Rhododendron simsii HOM05D003686 ORTHO05D004322 3.2e-65 252.3 223 62.8
Glyma.02G152300 Glycine max HOM05D003686 ORTHO05D004322 5.4e-65 251.5 209 68.9
Gohir.D08G053600 Gossypium hirsutum HOM05D003686 ORTHO05D004322 5.4e-65 251.5 203 71.4
PGR031G1643 Punica granatum HOM05D003686 ORTHO05D004322 1.0e-63 247.3 206 65.5
Duzib133G0241 Durio zibethinus HOM05D003686 ORTHO05D004322 1.3e-63 246.9 209 68.4
Eucgr.B02749 Eucalyptus grandis HOM05D003686 ORTHO05D004322 1.3e-63 246.9 204 71.6
Manes.05G068800 Manihot esculenta HOM05D003686 ORTHO05D004322 3.9e-63 245.4 209 68.9
Actinidia00703 Actinidia chinensis HOM05D003686 ORTHO05D004322 6.6e-63 244.6 208 68.8
TWI23G0547 Tripterygium wilfordii HOM05D003686 ORTHO05D004322 6.6e-63 244.6 202 69.3
Lalb_Chr06g0163281 Lupinus albus HOM05D003686 ORTHO05D004322 1.1e-62 243.8 210 67.6
Nn1g08910 Nelumbo nucifera HOM05D003686 ORTHO05D004322 1.1e-62 243.8 203 67.0
Ciclev10022350m.g Citrus clementina HOM05D003686 ORTHO05D004322 3.3e-62 242.3 204 70.6
Aqoxy2G03146 Aquilegia oxysepala HOM05D003686 ORTHO05D004322 1.6e-61 240.0 198 66.2
Cpa.g.sc9.157 Carica papaya HOM05D003686 ORTHO05D004322 2.8e-61 239.2 207 62.8
RcHm_v2.0_Chr6g0292481 Rosa chinensis HOM05D003686 ORTHO05D004322 4.7e-61 238.4 206 64.1
Phvul.007G166600 Phaseolus vulgaris HOM05D003686 ORTHO05D004322 1.4e-60 236.9 209 66.5
TPR.G15798 Trifolium pratense HOM05D003686 ORTHO05D004322 4.0e-60 235.3 208 67.8
Lalb_Chr02g0143061 Lupinus albus HOM05D003686 ORTHO05D004322 5.2e-60 235.0 210 65.2
Gorai.007G132200 Gossypium raimondii HOM05D003686 ORTHO05D004322 1.2e-59 233.8 209 66.0
Gohir.A11G118400 Gossypium hirsutum HOM05D003686 ORTHO05D004322 5.8e-59 231.5 209 65.1
Ca_10377_v3 Cicer arietinum L. HOM05D003686 ORTHO05D004322 1.7e-58 229.9 204 60.8
Ca_29655_v3 Cicer arietinum L. HOM05D003686 ORTHO05D004322 1.7e-58 229.9 204 60.8
Dinv11293 Davidia involucrata HOM05D003686 ORTHO05D004322 4.9e-58 228.4 206 65.0
Sed0010038 Sechium edule HOM05D003686 ORTHO05D004322 4.9e-58 228.4 203 68.0
vmacro17192 Vaccinium macrocarpon HOM05D003686 ORTHO05D004322 4.9e-58 228.4 203 62.1
Dinv11297 Davidia involucrata HOM05D003686 ORTHO05D004322 1.4e-57 226.9 206 64.6
FAN20G0133 Fragaria x ananassa HOM05D003686 ORTHO05D004322 1.4e-57 226.9 204 62.7
FAN27G0391 Fragaria x ananassa HOM05D003686 ORTHO05D004322 1.4e-57 226.9 204 62.7
Lj1g0025208 Lotus japonicus HOM05D003686 ORTHO05D004322 1.2e-56 223.8 206 61.2
FAN15G3346 Fragaria x ananassa HOM05D003686 ORTHO05D004322 6.0e-56 221.5 207 61.8
arahy.Tifrunner.gnm1.ann1.MV1AMG Arachis hypogaea HOM05D003686 ORTHO05D004322 3.9e-55 218.8 210 61.9
FvH4_2g24650 Fragaria vesca HOM05D003686 ORTHO05D004322 3.9e-55 218.8 204 61.3
Nn2g12370 Nelumbo nucifera HOM05D003686 ORTHO05D004322 6.6e-55 218.0 186 65.1
GSVIVG01011011001 Vitis vinifera HOM05D003686 ORTHO05D004322 8.7e-55 217.6 160 76.9
CiPaw.08G100800 Carya illinoinensis HOM05D003686 ORTHO05D004322 1.5e-54 216.9 204 65.7
TPR.G18851 Trifolium pratense HOM05D004763 ORTHO05D007492 5.6e-54 214.9 230 54.3
Thecc.10G102800 Theobroma cacao HOM05D003686 ORTHO05D004322 7.3e-54 214.5 209 62.7
Ca_09109_v3 Cicer arietinum L. HOM05D003686 ORTHO05D004322 1.1e-52 210.7 175 65.1
CsaV3_7G028310 Cucumis sativus L. HOM05D003686 ORTHO05D004322 2.4e-52 209.5 204 64.7
ClCG09G006530 Citrullus lanatus HOM05D003686 ORTHO05D004322 6.9e-52 208.0 206 63.6
Duzib138G0197 Durio zibethinus HOM05D003686 ORTHO05D004322 1.5e-51 206.8 212 59.0
Cfa010467 Carpinus fangiana HOM05D003686 ORTHO05D004322 2.0e-51 206.5 119 83.2
MELO3C015891.2 Cucumis melo HOM05D003686 ORTHO05D004322 3.4e-51 205.7 204 63.7
DCAR_007018 Daucus carota HOM05D003686 ORTHO05D004322 3.4e-51 205.7 215 62.3
Lj5g0005016 Lotus japonicus HOM05D003686 ORTHO05D004322 3.4e-51 205.7 222 55.9
Lsat_1_v5_gn_5_188760 Lactuca sativa HOM05D003686 ORTHO05D004322 1.1e-49 200.7 221 57.5
ATR0706G002 Amborella trichopoda HOM05D003686 ORTHO05D004322 5.4e-49 198.4 207 58.9
HanXRQChr11g0330151 Helianthus annuus HOM05D003686 ORTHO05D004322 2.7e-48 196.1 205 58.0
CDE11G0890 Ceratophyllum demersum HOM05D003686 ORTHO05D004322 3.5e-48 195.7 131 76.3
MD03G1275200 Malus domestica HOM05D003686 ORTHO05D004322 3.5e-48 195.7 208 54.8
Prupe.8G251800 Prunus persica HOM05D003686 ORTHO05D004322 7.9e-48 194.5 208 58.7
Medtr1g088990 Medicago truncatula HOM05D003686 ORTHO05D004322 1.0e-47 194.1 211 60.7
HanXRQChr01g0002781 Helianthus annuus HOM05D003686 ORTHO05D004322 1.7e-47 193.4 226 54.9
PSO801G0146 Papaver somniferum HOM05D003686 ORTHO05D004322 5.1e-47 191.8 202 61.4
Psat6g168000 Pisum sativum HOM05D003686 ORTHO05D004322 5.1e-47 191.8 191 63.9
MSTRG.21821 Avicennia marina HOM05D003686 ORTHO05D004322 6.6e-47 191.4 196 55.6
Cc01_g20160 Coffea canephora HOM05D003686 ORTHO05D004322 6.6e-47 191.4 225 53.3
MD11G1297300 Malus domestica HOM05D003686 ORTHO05D004322 1.5e-46 190.3 207 54.6
Solyc01g067830.3 Solanum lycopersicum HOM05D003686 ORTHO05D004322 1.9e-46 189.9 184 56.0
arahy.Tifrunner.gnm1.ann1.TAZ1K7 Arachis hypogaea HOM05D003686 ORTHO05D004322 4.3e-46 188.7 240 52.1
FAN20G1534 Fragaria x ananassa HOM05D003686 ORTHO05D004322 2.8e-45 186.0 187 59.4
Nitab4.5_0004238g0080 Nicotiana tabacum HOM05D003686 ORTHO05D004322 2.8e-45 186.0 209 54.5
ECA248G2178 Erigeron canadensis HOM05D003686 ORTHO05D004322 3.6e-45 185.7 274 45.3
Migut.N00130 Erythranthe guttata HOM05D003686 ORTHO05D004322 6.2e-45 184.9 197 57.4
Hma1.2p1_0643F.1_g194700 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 6.2e-45 184.9 116 78.4
Hma1.2p1_0643F.1_g194711 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 6.2e-45 184.9 116 78.4
Nitab4.5_0000295g0050 Nicotiana tabacum HOM05D003686 ORTHO05D004322 6.2e-45 184.9 209 54.1
Os02g0266100 Oryza sativa ssp. japonica HOM05D003686 ORTHO05D004322 8.1e-45 184.5 126 76.2
Solyc06g008860.3 Solanum lycopersicum HOM05D003686 ORTHO05D004322 8.1e-45 184.5 218 52.3
Sopen06g003610 Solanum pennellii HOM05D003686 ORTHO05D004322 1.4e-44 183.7 218 52.3
PGSC0003DMG400021997 Solanum tuberosum HOM05D003686 ORTHO05D004322 1.8e-44 183.3 210 53.8
CAN.G185.6 Capsicum annuum HOM05D003686 ORTHO05D004322 3.1e-44 182.6 201 55.2
Thhalv10028986m.g Eutrema salsugineum HOM05D003686 ORTHO05D004322 4.0e-44 182.2 206 59.2
Sp6g03160 Schrenkiella parvula HOM05D003686 ORTHO05D004322 4.0e-44 182.2 119 77.3
Psat3g024960 Pisum sativum HOM05D003686 ORTHO05D004322 5.3e-44 181.8 182 61.0
ECA247G2101 Erigeron canadensis HOM05D003686 ORTHO05D004322 6.9e-44 181.4 252 50.4
Medtr7g107640 Medicago truncatula HOM05D003686 ORTHO05D004322 6.9e-44 181.4 182 62.1
FAN24G2968 Fragaria x ananassa HOM05D003686 ORTHO05D004322 9.0e-44 181.0 187 56.7
A03p30600 Brassica napus HOM05D003686 ORTHO05D004322 1.2e-43 180.6 204 59.3
CARHR251560 Cardamine hirsuta HOM05D003686 ORTHO05D004322 1.5e-43 180.3 122 74.6
BcaB05g23688 Brassica carinata HOM05D003686 ORTHO05D004322 4.5e-43 178.7 120 76.7
BcaB05g23689 Brassica carinata HOM05D003686 ORTHO05D004322 4.5e-43 178.7 120 76.7
Sopen01g029780 Solanum pennellii HOM05D003686 ORTHO05D004322 5.8e-43 178.3 184 58.7
THA.LOC104826011 Tarenaya hassleriana HOM05D003686 ORTHO05D004322 5.8e-43 178.3 208 55.3
Hma1.2p1_0643F.1_g194695 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 1.3e-42 177.2 176 57.4
Hma1.2p1_0643F.1_g194710 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 1.3e-42 177.2 176 57.4
THA.LOC104817532 Tarenaya hassleriana HOM05D003686 ORTHO05D004322 1.3e-42 177.2 122 73.8
C03p37160 Brassica napus HOM05D003686 ORTHO05D004322 2.2e-42 176.4 121 74.4
BraA03t12240Z Brassica rapa HOM05D003686 ORTHO05D004322 3.8e-42 175.6 202 58.9
Sed0008045 Sechium edule HOM05D003686 ORTHO05D004322 6.4e-42 174.9 203 55.7
AT4G03120 Arabidopsis thaliana HOM05D003686 ORTHO05D004322 8.4e-42 174.5 120 75.8
BolC3t16013H Brassica oleracea HOM05D003686 ORTHO05D004322 3.2e-41 172.6 118 74.6
DCAR_012430 Daucus carota HOM05D003686 ORTHO05D004322 3.2e-41 172.6 209 54.5
Lj2P1184T34 Lonicera japonica HOM05D003686 ORTHO05D004322 3.2e-41 172.6 188 56.4
BcaB01g02510 Brassica carinata HOM05D003686 ORTHO05D004322 5.5e-41 171.8 110 77.3
BcaC01g06704 Brassica carinata HOM05D003686 ORTHO05D004322 1.2e-40 170.6 110 76.4
Zm00001eb203990 Zea mays HOM05D003686 ORTHO05D004322 1.6e-40 170.2 131 70.2
BcaB01g01979 Brassica carinata HOM05D003686 ORTHO05D004322 3.5e-40 169.1 204 56.9
CAN.G1006.23 Capsicum annuum HOM05D003686 ORTHO05D004322 1.3e-39 167.2 212 50.5
BolC2t10013H Brassica oleracea HOM05D003686 ORTHO05D004322 6.7e-39 164.9 122 72.1
SGA_v2.0_scaffold172G39059 Striga asiatica HOM05D003686 ORTHO05D004322 6.7e-39 164.9 221 49.3
BolC9t53184H Brassica oleracea HOM05D003686 ORTHO05D004322 1.1e-38 164.1 202 56.4
BraA02t07500Z Brassica rapa HOM05D003686 ORTHO05D004322 1.1e-38 164.1 150 62.7
BcaC03g16209 Brassica carinata HOM05D003686 ORTHO05D004322 1.5e-38 163.7 117 72.6
Mapoly0087s0074 Marchantia polymorpha HOM05D003686 ORTHO05D004322 1.9e-38 163.3 174 55.7
PSO339G4974 Papaver somniferum HOM05D003686 ORTHO05D004322 2.5e-38 162.9 203 54.2
A09p02440 Brassica napus HOM05D003686 ORTHO05D004322 7.4e-38 161.4 208 53.8
BraA09t35891Z Brassica rapa HOM05D003686 ORTHO05D004322 7.4e-38 161.4 208 53.8
CSS0048633 Camellia sinensis var. sinensis HOM05D003686 ORTHO05D004322 7.4e-38 161.4 215 52.6
Nitab4.5_0001149g0030 Nicotiana tabacum HOM05D003686 ORTHO05D004322 4.8e-37 158.7 184 51.6
Carub.0006s3393 Capsella rubella HOM05D003686 ORTHO05D004322 1.4e-36 157.1 203 53.7
vmacro14959 Vaccinium macrocarpon HOM05D003686 ORTHO05D004322 1.4e-36 157.1 212 47.6
PGSC0003DMG400022854 Solanum tuberosum HOM05D003686 ORTHO05D004322 4.0e-36 155.6 183 55.2
SGA_v2.0_scaffold36G14363 Striga asiatica HOM05D003686 ORTHO05D004322 6.9e-36 154.8 189 55.0
Peaxi162Scf01364g00015 Petunia axillaris HOM05D003686 ORTHO05D004322 4.5e-35 152.1 109 67.0
unitig_61.g26148 Utricularia gibba HOM05D003686 ORTHO05D004322 5.8e-35 151.8 197 49.2
Nitab4.5_0001624g0040 Nicotiana tabacum HOM05D003686 ORTHO05D004322 7.6e-35 151.4 184 50.0
Mapoly0103s0046 Marchantia polymorpha HOM05D003686 ORTHO05D004322 3.8e-34 149.1 220 49.5
HPP92_021461 Vanilla planifolia HOM05D003686 ORTHO05D004322 3.8e-34 149.1 181 52.5
CSS0007511 Camellia sinensis var. sinensis HOM05D003686 ORTHO05D004322 1.4e-33 147.1 106 70.8
CSS0037271 Camellia sinensis var. sinensis HOM05D003686 ORTHO05D004322 1.4e-33 147.1 106 70.8
COL.COLO4_34092 Corchorus olitorius HOM05D003686 ORTHO05D004322 1.9e-33 146.7 119 67.2
SalBow6G6913 Salvia bowleyana HOM05D003686 ORTHO05D004322 1.9e-33 146.7 208 49.5
A02p25120 Brassica napus HOM05D003686 ORTHO05D004322 1.2e-32 144.1 197 53.3
Sc25g0004660 Simmondsia chinensis HOM05D003686 ORTHO05D004322 6.0e-32 141.7 189 51.9
AUR62025901 Chenopodium quinoa HOM05D003686 ORTHO05D004322 7.9e-32 141.4 200 49.5
AUR62025902 Chenopodium quinoa HOM05D003686 ORTHO05D004322 7.9e-32 141.4 200 49.5
QL07p015856 Quercus lobata HOM05D003686 ORTHO05D004322 7.9e-32 141.4 196 48.5
Pp3c4_170 Physcomitrium patens HOM05D003686 ORTHO05D004322 1.8e-31 140.2 121 63.6
Pp3c12_26180 Physcomitrium patens HOM05D003686 ORTHO05D004322 2.3e-31 139.8 121 62.8
QL93p0358_0018 Quercus lobata HOM05D003686 ORTHO05D004322 3.9e-31 139.0 196 48.0
Ah.12g061550 Amaranthus hybridus HOM05D003686 ORTHO05D004322 8.7e-31 137.9 162 57.4
AUR62029649 Chenopodium quinoa HOM05D003686 ORTHO05D004322 8.7e-31 137.9 199 48.2
EL10Ac2g03326 Beta vulgaris HOM05D003686 ORTHO05D004322 2.5e-30 136.3 224 44.2
Migut.N02118 Erythranthe guttata HOM05D003686 ORTHO05D004322 2.5e-30 136.3 117 65.8
Migut.O00643 Erythranthe guttata HOM05D003686 ORTHO05D004322 2.5e-30 136.3 117 65.8
AagrBONN_evm.TU.Sc2ySwM_228.930 Anthoceros agrestis HOM05D003686 ORTHO05D004322 1.6e-29 133.7 90 73.3
Oeu022800.1 Olea europaea HOM05D003686 ORTHO05D004322 2.8e-29 132.9 98 70.4
Oeu022802.1 Olea europaea HOM05D003686 ORTHO05D004322 2.8e-29 132.9 98 70.4
SalBow8G5349 Salvia bowleyana HOM05D003686 ORTHO05D004322 6.3e-29 131.7 172 52.3
MSTRG.12592 Avicennia marina HOM05D003686 ORTHO05D004322 8.2e-29 131.3 89 74.2
vmacro02511 Vaccinium macrocarpon HOM05D003686 ORTHO05D004322 1.1e-28 131.0 189 52.4
C09p02540 Brassica napus HOM05D003686 ORTHO05D004322 6.9e-28 128.3 187 52.9
vmacro14957 Vaccinium macrocarpon HOM05D003686 ORTHO05D004322 2.6e-27 126.3 192 46.4
Lj3A810T51 Lonicera japonica HOM05D003686 ORTHO05D004322 2.9e-26 122.9 174 47.1
SGA_v2.0_scaffold89G27564 Striga asiatica HOM05D003686 ORTHO05D004322 2.9e-26 122.9 198 41.9
Peaxi162Scf00936g00218 Petunia axillaris HOM05D003686 ORTHO05D004322 5.0e-26 122.1 171 49.7
Hund24902 Selenicereus undatus HOM05D003686 ORTHO05D004322 1.6e-24 117.1 145 53.1
Psat3g182400 Pisum sativum HOM05D003686 ORTHO05D004322 2.7e-24 116.3 62 83.9
Peaxi162Scf01067g00002 Petunia axillaris HOM05D003686 ORTHO05D004322 1.0e-23 114.4 96 60.4
unitig_22.g6331 Utricularia gibba HOM05D003686 ORTHO05D004322 1.3e-23 114.0 127 52.8
Psat0s3642g0040 Pisum sativum HOM05D000068 ORTHO05D025728 1.8e-23 113.6 62 85.5
HPP92_021468 Vanilla planifolia HOM05D003686 ORTHO05D004322 6.7e-23 111.7 56 92.9
Duzib211G0369 Durio zibethinus HOM05D003686 ORTHO05D004322 1.3e-21 107.5 129 55.8
Cre09.g401300 Chlamydomonas reinhardtii HOM05D003686 ORTHO05D004322 7.4e-14 81.6 41 82.9
Lj5g0025755 Lotus japonicus HOM05D003686 ORTHO05D009933 4.1e-12 75.9 66 60.6
Lj5g0006065 Lotus japonicus HOM05D003686 ORTHO05D004322 2.5e-09 66.6 91 42.9
PSO384G1563 Papaver somniferum HOM05D003686 ORTHO05D004322 5.5e-09 65.5 80 52.5
PSO384G1681 Papaver somniferum HOM05D003686 ORTHO05D004322 5.5e-09 65.5 80 52.5
CSS0028767 Camellia sinensis var. sinensis HOM05D003686 ORTHO05D004322 9.4e-09 64.7 102 49.0
CSS0035418 Camellia sinensis var. sinensis HOM05D003686 ORTHO05D004322 9.4e-09 64.7 102 49.0
Aa31LG5G2650 Aethionema arabicum HOM05D003686 ORTHO05D004322 2.7e-08 63.2 124 38.7
PSO384G1636 Papaver somniferum HOM05D000185 ORTHO05D000105 7.9e-08 61.6 184 37.0
PRCOL_00005459 Prasinoderma coloniale HOM05D003686 ORTHO05D004322 7.9e-08 61.6 41 65.9
PSO384G1591 Papaver somniferum HOM05D000185 ORTHO05D000105 1.4e-07 60.8 184 37.0


User provided reference genes

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