Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G143600 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 5.3e-269 930.6 541 100.0
VMungo0540G1287 Vigna mungo HOM05D003850 ORTHO05D004515 8.9e-240 833.6 541 88.2
Glyma.09G009900 Glycine max HOM05D003850 ORTHO05D004515 3.9e-227 791.6 542 84.1
Ca_00718_v3 Cicer arietinum L. HOM05D003850 ORTHO05D004515 1.0e-219 766.9 542 80.3
Glyma.15G114200 Glycine max HOM05D003850 ORTHO05D004515 2.4e-213 745.7 541 84.1
Lalb_Chr20g0119201 Lupinus albus HOM05D003850 ORTHO05D004515 1.5e-202 709.9 544 77.2
arahy.Tifrunner.gnm1.ann1.C17RPB Arachis hypogaea HOM05D003850 ORTHO05D004515 2.5e-202 709.1 540 75.6
arahy.Tifrunner.gnm1.ann1.IIR6TV Arachis hypogaea HOM05D003850 ORTHO05D004515 5.3e-200 701.4 542 74.9
TPR.G3343 Trifolium pratense HOM05D003850 ORTHO05D004515 2.5e-194 682.6 566 74.2
VMungo1215G3075 Vigna mungo HOM05D003850 ORTHO05D004515 2.1e-193 679.5 543 74.8
QL05p069776 Quercus lobata HOM05D003850 ORTHO05D004515 1.4e-192 676.8 544 74.1
arahy.Tifrunner.gnm1.ann1.97WSNQ Arachis hypogaea HOM05D003850 ORTHO05D004515 3.8e-190 668.7 555 74.6
CANSAT56G0590 Cannabis sativa HOM05D003850 ORTHO05D004515 9.3e-189 664.1 545 73.4
TAR624G0821 Trochodendron aralioides HOM05D003850 ORTHO05D004515 6.0e-188 661.4 545 72.5
Phvul.003G083500 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 5.1e-187 658.3 544 74.3
Atru.chr1.2461 Acer truncatum HOM05D003850 ORTHO05D004515 3.3e-186 655.6 545 72.1
Nn1g03331 Nelumbo nucifera HOM05D003850 ORTHO05D004515 2.4e-184 649.4 547 70.7
arahy.Tifrunner.gnm1.ann1.0C9QHL Arachis hypogaea HOM05D003850 ORTHO05D004515 1.2e-183 647.1 556 72.1
Ciclev10014841m.g Citrus clementina HOM05D003850 ORTHO05D004515 3.4e-183 645.6 545 71.7
Medtr2g025590 Medicago truncatula HOM05D003850 ORTHO05D004515 3.4e-183 645.6 540 73.1
CSS0032808 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 9.3e-181 637.5 546 68.1
Aqoxy1G04110 Aquilegia oxysepala HOM05D003850 ORTHO05D004515 2.3e-179 632.9 547 68.2
Duzib160G0220 Durio zibethinus HOM05D003850 ORTHO05D004515 6.7e-179 631.3 555 69.0
CSS0007684 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 2.5e-178 629.4 546 68.7
Sed0003006 Sechium edule HOM05D003850 ORTHO05D004515 3.3e-178 629.0 542 70.5
Thecc.06G232700 Theobroma cacao HOM05D003850 ORTHO05D004515 2.2e-177 626.3 555 69.0
CiPaw.09G102000 Carya illinoinensis HOM05D003850 ORTHO05D004515 1.1e-176 624.0 546 69.2
Potri.006G009100 Populus trichocarpa HOM05D003850 ORTHO05D004515 8.5e-174 614.4 545 69.9
Prupe.4G011300 Prunus persica HOM05D003850 ORTHO05D004515 1.1e-173 614.0 545 69.4
Lj4g0025543 Lotus japonicus HOM05D003850 ORTHO05D004515 3.2e-173 612.5 542 70.5
Lj6g0013016 Lotus japonicus HOM05D003850 ORTHO05D004515 5.5e-173 611.7 547 74.4
Migut.M01390 Erythranthe guttata HOM05D003850 ORTHO05D004515 9.4e-173 610.9 543 67.6
Sopen11g006940 Solanum pennellii HOM05D003850 ORTHO05D004515 2.1e-172 609.8 542 67.7
PSO210G4264 Papaver somniferum HOM05D003850 ORTHO05D004515 7.9e-172 607.8 547 70.0
CsaV3_3G028740 Cucumis sativus L. HOM05D003850 ORTHO05D004515 2.3e-171 606.3 541 68.9
TAR629G2665 Trochodendron aralioides HOM05D003850 ORTHO05D004515 2.3e-171 606.3 542 69.2
GSVIVG01003352001 Vitis vinifera HOM05D003850 ORTHO05D004515 6.7e-171 604.7 546 69.8
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 1.3e-169 600.5 544 67.5
Potri.016G015100 Populus trichocarpa HOM05D003850 ORTHO05D004515 1.7e-169 600.1 546 72.5
THA.LOC104812992 Tarenaya hassleriana HOM05D003850 ORTHO05D004515 2.8e-169 599.4 550 64.5
Nitab4.5_0001198g0010 Nicotiana tabacum HOM05D003850 ORTHO05D004515 2.6e-167 592.8 531 67.2
MSTRG.7170 Avicennia marina HOM05D003850 ORTHO05D004515 1.0e-166 590.9 545 65.9
Eucgr.E03951 Eucalyptus grandis HOM05D003850 ORTHO05D004515 1.0e-166 590.9 550 67.3
MBI16_g42266_MAGBIO Magnolia biondii HOM05D003850 ORTHO05D004515 1.4e-165 587.0 548 66.6
RhsimUnG0025700 Rhododendron simsii HOM05D003850 ORTHO05D004515 4.7e-164 582.0 590 63.4
RhsimUnG0028500 Rhododendron simsii HOM05D003850 ORTHO05D004515 4.7e-164 582.0 590 63.4
PGR102G0753 Punica granatum HOM05D003850 ORTHO05D004515 1.0e-163 580.9 547 67.8
Manes.07G088900 Manihot esculenta HOM05D003850 ORTHO05D004515 3.9e-163 578.9 538 67.8
ClCG07G001740 Citrullus lanatus HOM05D003850 ORTHO05D004515 4.4e-162 575.5 541 66.9
Nitab4.5_0000143g0310 Nicotiana tabacum HOM05D003850 ORTHO05D004515 3.7e-161 572.4 530 69.1
Gorai.010G186300 Gossypium raimondii HOM05D003850 ORTHO05D004515 2.0e-159 566.6 552 66.5
Gohir.A06G153120 Gossypium hirsutum HOM05D003850 ORTHO05D004515 7.7e-159 564.7 552 66.1
PSO302G0165 Papaver somniferum HOM05D003850 ORTHO05D004515 7.7e-159 564.7 544 68.8
CiPaw.10G077600 Carya illinoinensis HOM05D003850 ORTHO05D004515 3.8e-158 562.4 498 67.9
Cc09_g00920 Coffea canephora HOM05D003850 ORTHO05D004515 1.1e-157 560.8 546 66.5
Gohir.D06G159600 Gossypium hirsutum HOM05D003850 ORTHO05D004515 5.5e-157 558.5 552 66.1
SalBow8G5272 Salvia bowleyana HOM05D003850 ORTHO05D004515 2.7e-156 556.2 557 64.5
HPP92_001629 Vanilla planifolia HOM05D003850 ORTHO05D004515 1.4e-155 553.9 543 61.9
PGSC0003DMG400013344 Solanum tuberosum HOM05D003850 ORTHO05D004515 5.2e-155 552.0 505 67.1
AL6G47570 Arabidopsis lyrata HOM05D003850 ORTHO05D004515 8.8e-155 551.2 550 63.5
MD05G1357300 Malus domestica HOM05D003850 ORTHO05D004515 4.4e-154 548.9 553 64.0
Sabra06G0006900 Salix brachista HOM05D003850 ORTHO05D004515 7.5e-154 548.1 549 61.7
Solyc11g012150.3 Solanum lycopersicum HOM05D003850 ORTHO05D004515 7.5e-154 548.1 505 66.9
Actinidia39269 Actinidia chinensis HOM05D003850 ORTHO05D004515 3.1e-152 542.7 359 81.1
ECA233G3046 Erigeron canadensis HOM05D003850 ORTHO05D004515 3.1e-152 542.7 551 64.4
vmacro15772 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 7.0e-152 541.6 558 63.4
Oeu002760.2 Olea europaea HOM05D003850 ORTHO05D004515 1.7e-150 537.0 580 61.2
Cfa000110 Carpinus fangiana HOM05D003850 ORTHO05D004515 1.9e-149 533.5 544 63.8
AT4G12610 Arabidopsis thaliana HOM05D003850 ORTHO05D004515 4.7e-148 528.9 559 61.7
ATR0751G086 Amborella trichopoda HOM05D003850 ORTHO05D004515 1.0e-147 527.7 555 59.3
AUR62021872 Chenopodium quinoa HOM05D003850 ORTHO05D004515 1.0e-147 527.7 549 57.9
SGA_v2.0_scaffold4G01878 Striga asiatica HOM05D003850 ORTHO05D004515 1.4e-147 527.3 530 63.0
TWI63G0294 Tripterygium wilfordii HOM05D003850 ORTHO05D004515 3.0e-147 526.2 517 67.1
vmacro03646 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 4.4e-146 522.3 563 56.7
Haze_08659 Corylus avellana HOM05D003850 ORTHO05D004515 9.8e-146 521.2 584 57.0
SEGI_18521 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 2.8e-145 519.6 576 58.3
Sabra16G0017100 Salix brachista HOM05D003850 ORTHO05D004515 1.4e-144 517.3 577 58.1
Aa31LG9G10040 Aethionema arabicum HOM05D003850 ORTHO05D004515 4.1e-144 515.8 583 59.0
Cpa.g.sc75.120 Carica papaya HOM05D003850 ORTHO05D004515 4.5e-143 512.3 543 62.2
Sabra16G0000900 Salix brachista HOM05D003850 ORTHO05D004515 3.8e-142 509.2 553 57.3
FAN25G3770 Fragaria x ananassa HOM05D003850 ORTHO05D004515 6.5e-142 508.4 590 56.4
Carub.0006s3188 Capsella rubella HOM05D003850 ORTHO05D004515 8.6e-142 508.1 549 60.5
COL.COLO4_31876 Corchorus olitorius HOM05D003850 ORTHO05D004515 8.6e-142 508.1 554 57.6
FvH4_3g01042 Fragaria vesca HOM05D003850 ORTHO05D004515 1.0e-139 501.1 564 57.3
Psat1g176560 Pisum sativum HOM05D003850 ORTHO05D004515 1.8e-139 500.4 467 68.7
Peaxi162Scf00558g00516 Petunia axillaris HOM05D003850 ORTHO05D004515 4.0e-139 499.2 498 63.1
unitig_748.g7103 Utricularia gibba HOM05D003850 ORTHO05D004515 5.7e-138 495.4 538 59.9
MD10G1331000 Malus domestica HOM05D003850 ORTHO05D004515 1.7e-137 493.8 514 60.7
CAN.G1186.28 Capsicum annuum HOM05D003850 ORTHO05D004515 3.1e-136 489.6 544 59.2
Lj2A262G45 Lonicera japonica HOM05D003850 ORTHO05D004515 4.1e-136 489.2 515 62.3
RcHm_v2.0_Chr5g0001581 Rosa chinensis HOM05D003850 ORTHO05D004515 1.6e-135 487.3 562 58.2
SHI24464 Sapria himalayana HOM05D003850 ORTHO05D004515 2.7e-135 486.5 539 57.7
CARHR253560 Cardamine hirsuta HOM05D003850 ORTHO05D004515 4.5e-135 485.7 546 59.5
HanXRQChr15g0470091 Helianthus annuus HOM05D003850 ORTHO05D004515 1.7e-134 483.8 532 61.7
PSO339G3925 Papaver somniferum HOM05D003850 ORTHO05D004515 2.1e-132 476.9 551 57.5
BcaC01g04577 Brassica carinata HOM05D003850 ORTHO05D004515 4.7e-132 475.7 550 58.5
BolC3t15918H Brassica oleracea HOM05D003850 ORTHO05D004515 4.7e-132 475.7 550 58.5
C03p36090 Brassica napus HOM05D003850 ORTHO05D004515 6.1e-132 475.3 548 58.6
A03p29830 Brassica napus HOM05D003850 ORTHO05D004515 1.5e-130 470.7 548 58.2
BraA03t12173Z Brassica rapa HOM05D003850 ORTHO05D004515 7.5e-130 468.4 549 57.7
FAN21G1422 Fragaria x ananassa HOM05D003850 ORTHO05D004515 9.8e-130 468.0 582 54.3
Hund23984 Selenicereus undatus HOM05D003850 ORTHO05D004515 1.3e-129 467.6 557 59.1
Thhalv10028564m.g Eutrema salsugineum HOM05D003850 ORTHO05D004515 2.2e-129 466.8 546 57.5
MELO3C012788.2 Cucumis melo HOM05D003850 ORTHO05D004515 2.4e-128 463.4 465 65.8
BcaB01g01757 Brassica carinata HOM05D003850 ORTHO05D004515 5.9e-127 458.8 538 56.5
BraA09t38246Z Brassica rapa HOM05D003850 ORTHO05D004515 5.9e-127 458.8 542 57.0
RhsimUnG0109100 Rhododendron simsii HOM05D003850 ORTHO05D004515 3.9e-126 456.1 524 55.5
BcaB01g02623 Brassica carinata HOM05D003850 ORTHO05D004515 3.6e-124 449.5 536 59.0
Sp6g04900 Schrenkiella parvula HOM05D003850 ORTHO05D004515 3.6e-124 449.5 564 55.3
Zm00001eb224360 Zea mays HOM05D003850 ORTHO05D004515 1.8e-123 447.2 489 59.9
Lsat_1_v5_gn_7_13561 Lactuca sativa HOM05D003850 ORTHO05D004515 3.1e-123 446.4 500 62.2
BolC9t56221H Brassica oleracea HOM05D003850 ORTHO05D004515 5.2e-123 445.7 541 54.7
Oeu044421.3 Olea europaea HOM05D003850 ORTHO05D004515 5.2e-123 445.7 840 41.5
A09p26740 Brassica napus HOM05D003850 ORTHO05D004515 1.2e-122 444.5 542 58.1
Rhsim13G0146600 Rhododendron simsii HOM05D003850 ORTHO05D004515 1.3e-118 431.0 578 50.3
CDE04G2591 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 2.3e-118 430.3 546 55.3
EL10Ac8g20176 Beta vulgaris HOM05D003850 ORTHO05D004515 2.3e-115 420.2 548 56.4
BcaC04g21251 Brassica carinata HOM05D003850 ORTHO05D004515 5.2e-115 419.1 540 57.2
C09p33830 Brassica napus HOM05D003850 ORTHO05D004515 5.2e-115 419.1 540 57.2
Medtr2g025620 Medicago truncatula HOM05D003850 ORTHO05D004515 1.1e-112 411.4 522 57.3
Lj8A171G42 Lonicera japonica HOM05D003850 ORTHO05D004515 1.9e-112 410.6 546 49.6
RcHm_v2.0_Chr5g0007791 Rosa chinensis HOM05D003850 ORTHO05D004515 7.8e-111 405.2 554 52.0
CDE06G1774 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 1.8e-107 394.0 326 66.6
Pp3c3_2280 Physcomitrium patens HOM05D003850 ORTHO05D004515 6.8e-107 392.1 559 48.3
Duzib235G1223 Durio zibethinus HOM05D003850 ORTHO05D004515 3.2e-104 383.3 409 63.1
Mapoly0105s0015 Marchantia polymorpha HOM05D003850 ORTHO05D004515 2.7e-103 380.2 551 48.6
FAN11G3915 Fragaria x ananassa HOM05D003850 ORTHO05D004515 3.3e-101 373.2 552 48.9
FvH4_3g04782 Fragaria vesca HOM05D003850 ORTHO05D004515 4.3e-101 372.9 552 49.5
Zm00001eb398520 Zea mays HOM05D003850 ORTHO05D004515 3.6e-100 369.8 541 44.4
FAN16G3024 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.8e-99 367.5 552 48.7
FAN21G1676 Fragaria x ananassa HOM05D003850 ORTHO05D004515 2.6e-98 363.6 541 49.4
FAN03G2951 Fragaria x ananassa HOM05D003850 ORTHO05D004515 5.8e-98 362.5 541 49.2
QL09p006300 Quercus lobata HOM05D003850 ORTHO05D004515 5.4e-96 355.9 365 67.9
DCAR_025996 Daucus carota HOM05D003850 ORTHO05D004515 2.7e-95 353.6 454 57.7
TPR.G34491 Trifolium pratense HOM05D003850 ORTHO05D004515 7.8e-95 352.1 195 86.7
FvH4_2g22070 Fragaria vesca HOM05D003850 ORTHO05D004515 1.5e-93 347.8 553 44.5
AUR62012783 Chenopodium quinoa HOM05D003850 ORTHO05D004515 1.9e-93 347.4 428 54.2
TPR.G13041 Trifolium pratense HOM05D003850 ORTHO05D004515 1.9e-93 347.4 367 68.7
FAN24G0125 Fragaria x ananassa HOM05D003850 ORTHO05D008045 2.6e-90 337.0 553 44.1
Dinv07398 Davidia involucrata HOM05D003850 ORTHO05D004515 7.9e-79 298.9 325 64.6
AagrBONN_evm.TU.Sc2ySwM_228.4136 Anthoceros agrestis HOM05D003850 ORTHO05D004515 1.3e-78 298.1 371 48.2
Peaxi162Scf00015g02110 Petunia axillaris HOM05D003850 ORTHO05D004515 7.1e-72 275.8 311 59.5
SEGI_38016 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 6.7e-70 269.2 334 49.4
Sc17g0007710 Simmondsia chinensis HOM05D003850 ORTHO05D004515 5.7e-61 239.6 368 55.2
FAN25G2646 Fragaria x ananassa HOM05D003850 ORTHO05D004515 3.4e-58 230.3 507 39.6
HPP92_001646 Vanilla planifolia HOM05D003850 ORTHO05D004515 7.7e-58 229.2 246 63.8
Actinidia11880 Actinidia chinensis HOM05D003850 ORTHO05D004515 2.7e-55 220.7 337 51.0
Gorai.002G145900 Gossypium raimondii HOM05D003850 ORTHO05D004515 3.2e-40 170.6 176 68.2
Lsat_1_v5_gn_5_64561 Lactuca sativa HOM05D003952 ORTHO05D004515 2.6e-37 161.0 165 59.4
HPP92_001645 Vanilla planifolia HOM05D003850 ORTHO05D004515 7.5e-37 159.5 100 74.0
CBR_g38333 Chara braunii HOM05D000019 ORTHO05D000002 3.7e-36 157.1 241 44.4
TAR629G2548 Trochodendron aralioides HOM05D003850 ORTHO05D004515 2.8e-28 131.0 313 35.1
Gohir.D01G119450 Gossypium hirsutum HOM05D003850 ORTHO05D004515 4.8e-28 130.2 102 80.4
arahy.Tifrunner.gnm1.ann1.5H9H8Z Arachis hypogaea HOM05D003850 ORTHO05D004515 5.4e-27 126.7 110 74.5
arahy.Tifrunner.gnm1.ann1.4A53N1 Arachis hypogaea HOM05D003850 ORTHO05D004515 1.7e-25 121.7 113 73.5
RcHm_v2.0_Chr6g0288941 Rosa chinensis HOM05D003850 ORTHO05D004515 1.1e-24 119.0 268 39.6
PSO339G5270 Papaver somniferum HOM05D003850 ORTHO05D004515 4.2e-24 117.1 211 43.1
CDE06G0619 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 1.6e-23 115.2 209 46.9
arahy.Tifrunner.gnm1.ann1.N7GRQP Arachis hypogaea HOM05D003850 ORTHO05D004515 2.0e-21 108.2 77 80.5
arahy.Tifrunner.gnm1.ann1.UE8YUV Arachis hypogaea HOM05D003850 ORTHO05D004515 2.0e-21 108.2 77 80.5
AagrBONN_evm.TU.Sc2ySwM_228.3786 Anthoceros agrestis HOM05D003850 ORTHO05D004515 1.3e-20 105.5 140 40.7
VMungo0720G0179 Vigna mungo HOM05D003850 ORTHO05D004515 3.7e-20 104.0 51 92.2
arahy.Tifrunner.gnm1.ann1.GFC3N0 Arachis hypogaea HOM05D003850 ORTHO05D004515 3.8e-17 94.0 94 64.9
PSO384G4333 Papaver somniferum HOM05D003850 ORTHO05D004515 2.5e-16 91.3 175 44.6
Eucgr.A01650 Eucalyptus grandis HOM05D002251 ORTHO05D004515 8.0e-15 86.3 55 69.1
Lsat_1_v5_gn_3_78300 Lactuca sativa HOM05D002115 ORTHO05D002263 1.0e-14 85.9 56 75.0
HPP92_001647 Vanilla planifolia HOM05D003850 ORTHO05D004515 1.0e-14 85.9 112 51.8
AagrBONN_evm.TU.Sc2ySwM_228.3787 Anthoceros agrestis HOM05D003850 ORTHO05D004515 2.9e-12 77.8 239 31.8
CAN.G1186.27 Capsicum annuum HOM05D001620 ORTHO05D005461 1.4e-11 75.5 59 61.0
Nitab4.5_0013082g0020 Nicotiana tabacum HOM05D003850 ORTHO05D004515 1.4e-11 75.5 71 57.7
FAN21G0780 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.2e-10 72.4 211 40.3
SEGI_29277 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 1.6e-10 72.0 209 33.5
Aqoxy1G04111 Aquilegia oxysepala HOM05D004257 ORTHO05D004515 2.7e-10 71.2 78 55.1
Nitab4.5_0006771g0010 Nicotiana tabacum HOM05D003850 ORTHO05D004515 7.8e-10 69.7 72 55.6
CARHR253550 Cardamine hirsuta HOM05D003850 ORTHO05D004515 1.2e-07 62.4 64 50.0
SEGI_19210 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 2.8e-07 61.2 130 29.2
Aa31LG9G10030 Aethionema arabicum HOM05D003850 ORTHO05D004515 3.6e-07 60.8 53 56.6
PSO339G0182 Papaver somniferum HOM05D009217 ORTHO05D009626 5.2e-06 57.0 102 38.2


User provided reference genes

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