Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G083500 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 2.7e-252 875.2 541 100.0
VMungo1215G3075 Vigna mungo HOM05D003850 ORTHO05D004515 9.5e-234 813.5 542 91.1
arahy.Tifrunner.gnm1.ann1.C17RPB Arachis hypogaea HOM05D003850 ORTHO05D004515 1.3e-198 696.8 541 74.9
QL05p069776 Quercus lobata HOM05D003850 ORTHO05D004515 4.6e-196 688.3 544 76.8
arahy.Tifrunner.gnm1.ann1.IIR6TV Arachis hypogaea HOM05D003850 ORTHO05D004515 4.3e-194 681.8 543 73.5
Ca_00718_v3 Cicer arietinum L. HOM05D003850 ORTHO05D004515 9.6e-194 680.6 545 74.3
Phvul.006G143600 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 5.3e-192 674.9 544 74.3
Glyma.09G009900 Glycine max HOM05D003850 ORTHO05D004515 1.9e-189 666.4 544 73.7
Nn1g03331 Nelumbo nucifera HOM05D003850 ORTHO05D004515 1.6e-185 653.3 546 73.6
TAR624G0821 Trochodendron aralioides HOM05D003850 ORTHO05D004515 1.4e-184 650.2 544 73.3
Medtr2g025590 Medicago truncatula HOM05D003850 ORTHO05D004515 3.1e-184 649.0 542 78.8
CANSAT56G0590 Cannabis sativa HOM05D003850 ORTHO05D004515 1.2e-183 647.1 544 70.4
VMungo0540G1287 Vigna mungo HOM05D003850 ORTHO05D004515 1.0e-182 644.0 544 71.9
Ciclev10014841m.g Citrus clementina HOM05D003850 ORTHO05D004515 1.7e-182 643.3 546 74.7
CiPaw.09G102000 Carya illinoinensis HOM05D003850 ORTHO05D004515 1.6e-180 636.7 544 73.7
arahy.Tifrunner.gnm1.ann1.97WSNQ Arachis hypogaea HOM05D003850 ORTHO05D004515 2.1e-180 636.3 556 73.2
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 2.3e-179 632.9 543 74.4
TPR.G3343 Trifolium pratense HOM05D003850 ORTHO05D004515 2.3e-179 632.9 568 70.6
arahy.Tifrunner.gnm1.ann1.0C9QHL Arachis hypogaea HOM05D003850 ORTHO05D004515 5.1e-179 631.7 556 74.3
CSS0007684 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 3.3e-178 629.0 546 71.4
Potri.006G009100 Populus trichocarpa HOM05D003850 ORTHO05D004515 5.7e-178 628.2 544 74.1
CSS0032808 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 9.7e-178 627.5 545 68.6
Lj4g0025543 Lotus japonicus HOM05D003850 ORTHO05D004515 6.3e-177 624.8 544 74.4
Atru.chr1.2461 Acer truncatum HOM05D003850 ORTHO05D004515 8.2e-177 624.4 547 71.5
Duzib160G0220 Durio zibethinus HOM05D003850 ORTHO05D004515 5.3e-176 621.7 554 69.0
GSVIVG01003352001 Vitis vinifera HOM05D003850 ORTHO05D004515 2.9e-174 615.9 545 75.2
Lalb_Chr20g0119201 Lupinus albus HOM05D003850 ORTHO05D004515 1.2e-172 610.5 544 67.6
TAR629G2665 Trochodendron aralioides HOM05D003850 ORTHO05D004515 2.7e-172 609.4 541 71.3
Sed0003006 Sechium edule HOM05D003850 ORTHO05D004515 7.9e-172 607.8 544 70.0
Eucgr.E03951 Eucalyptus grandis HOM05D003850 ORTHO05D004515 1.0e-171 607.4 549 70.7
MSTRG.7170 Avicennia marina HOM05D003850 ORTHO05D004515 1.4e-171 607.1 544 69.3
CsaV3_3G028740 Cucumis sativus L. HOM05D003850 ORTHO05D004515 3.9e-171 605.5 542 72.0
Cfa000110 Carpinus fangiana HOM05D003850 ORTHO05D004515 5.1e-171 605.1 543 75.7
Thecc.06G232700 Theobroma cacao HOM05D003850 ORTHO05D004515 1.7e-169 600.1 554 67.5
Aqoxy1G04110 Aquilegia oxysepala HOM05D003850 ORTHO05D004515 1.8e-168 596.7 548 64.2
RhsimUnG0025700 Rhododendron simsii HOM05D003850 ORTHO05D004515 2.4e-168 596.3 588 67.9
RhsimUnG0028500 Rhododendron simsii HOM05D003850 ORTHO05D004515 2.4e-168 596.3 588 67.9
ClCG07G001740 Citrullus lanatus HOM05D003850 ORTHO05D004515 2.2e-166 589.7 542 72.1
Glyma.15G114200 Glycine max HOM05D003850 ORTHO05D004515 2.9e-166 589.3 544 67.3
Prupe.4G011300 Prunus persica HOM05D003850 ORTHO05D004515 1.4e-165 587.0 545 68.8
Manes.07G088900 Manihot esculenta HOM05D003850 ORTHO05D004515 1.2e-164 583.9 541 72.1
THA.LOC104812992 Tarenaya hassleriana HOM05D003850 ORTHO05D004515 1.6e-164 583.6 549 65.9
Gohir.A06G153120 Gossypium hirsutum HOM05D003850 ORTHO05D004515 6.1e-164 581.6 552 70.3
Haze_08659 Corylus avellana HOM05D003850 ORTHO05D004515 3.9e-163 578.9 583 66.9
Gorai.010G186300 Gossypium raimondii HOM05D003850 ORTHO05D004515 5.2e-163 578.6 552 69.9
PGR102G0753 Punica granatum HOM05D003850 ORTHO05D004515 1.5e-162 577.0 546 69.6
Cc09_g00920 Coffea canephora HOM05D003850 ORTHO05D004515 1.3e-161 573.9 545 71.7
Gohir.D06G159600 Gossypium hirsutum HOM05D003850 ORTHO05D004515 7.0e-160 568.2 552 69.2
MBI16_g42266_MAGBIO Magnolia biondii HOM05D003850 ORTHO05D004515 7.0e-160 568.2 547 67.8
Migut.M01390 Erythranthe guttata HOM05D003850 ORTHO05D004515 1.6e-159 567.0 542 63.3
Cpa.g.sc75.120 Carica papaya HOM05D003850 ORTHO05D004515 7.7e-159 564.7 547 73.1
Potri.016G015100 Populus trichocarpa HOM05D003850 ORTHO05D004515 1.3e-158 563.9 544 68.6
Nitab4.5_0001198g0010 Nicotiana tabacum HOM05D003850 ORTHO05D004515 1.7e-158 563.5 532 66.7
SalBow8G5272 Salvia bowleyana HOM05D003850 ORTHO05D004515 2.2e-158 563.1 555 68.5
Sopen11g006940 Solanum pennellii HOM05D003850 ORTHO05D004515 2.2e-158 563.1 543 64.8
vmacro15772 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 2.2e-158 563.1 557 70.2
Oeu002760.2 Olea europaea HOM05D003850 ORTHO05D004515 4.2e-157 558.9 579 65.6
SGA_v2.0_scaffold4G01878 Striga asiatica HOM05D003850 ORTHO05D004515 7.2e-157 558.1 530 71.1
Sabra06G0006900 Salix brachista HOM05D003850 ORTHO05D004515 9.4e-157 557.8 547 66.9
Sabra16G0017100 Salix brachista HOM05D003850 ORTHO05D004515 1.6e-156 557.0 575 61.7
Lj6g0013016 Lotus japonicus HOM05D003850 ORTHO05D004515 2.1e-156 556.6 549 71.6
ECA233G3046 Erigeron canadensis HOM05D003850 ORTHO05D004515 1.8e-155 553.5 551 68.6
PSO210G4264 Papaver somniferum HOM05D003850 ORTHO05D004515 5.2e-155 552.0 548 65.9
AL6G47570 Arabidopsis lyrata HOM05D003850 ORTHO05D004515 7.5e-154 548.1 550 69.3
MD05G1357300 Malus domestica HOM05D003850 ORTHO05D004515 6.3e-153 545.0 554 67.7
COL.COLO4_31876 Corchorus olitorius HOM05D003850 ORTHO05D004515 8.2e-153 544.7 552 64.1
Sabra16G0000900 Salix brachista HOM05D003850 ORTHO05D004515 1.4e-152 543.9 552 59.4
TWI63G0294 Tripterygium wilfordii HOM05D003850 ORTHO05D004515 1.0e-150 537.7 514 71.4
AUR62021872 Chenopodium quinoa HOM05D003850 ORTHO05D004515 3.2e-149 532.7 545 58.7
Nitab4.5_0000143g0310 Nicotiana tabacum HOM05D003850 ORTHO05D004515 5.5e-149 531.9 531 64.8
HPP92_001629 Vanilla planifolia HOM05D003850 ORTHO05D004515 9.4e-149 531.2 539 58.8
AT4G12610 Arabidopsis thaliana HOM05D003850 ORTHO05D004515 1.4e-147 527.3 551 68.2
FAN25G3770 Fragaria x ananassa HOM05D003850 ORTHO05D004515 4.0e-147 525.8 587 60.5
ATR0751G086 Amborella trichopoda HOM05D003850 ORTHO05D004515 1.5e-146 523.9 550 63.3
CiPaw.10G077600 Carya illinoinensis HOM05D003850 ORTHO05D004515 9.8e-146 521.2 498 65.5
Aa31LG9G10040 Aethionema arabicum HOM05D003850 ORTHO05D004515 2.8e-145 519.6 564 65.6
Lj2A262G45 Lonicera japonica HOM05D003850 ORTHO05D004515 1.8e-144 516.9 517 69.1
FvH4_3g01042 Fragaria vesca HOM05D003850 ORTHO05D004515 5.4e-144 515.4 562 62.1
SEGI_18521 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 2.7e-143 513.1 552 61.6
MD10G1331000 Malus domestica HOM05D003850 ORTHO05D004515 2.9e-142 509.6 516 70.7
PSO302G0165 Papaver somniferum HOM05D003850 ORTHO05D004515 6.5e-142 508.4 544 62.9
CARHR253560 Cardamine hirsuta HOM05D003850 ORTHO05D004515 7.2e-141 505.0 547 69.5
Carub.0006s3188 Capsella rubella HOM05D003850 ORTHO05D004515 1.2e-140 504.2 549 66.1
Psat1g176560 Pisum sativum HOM05D003850 ORTHO05D004515 1.2e-140 504.2 469 77.6
RcHm_v2.0_Chr5g0001581 Rosa chinensis HOM05D003850 ORTHO05D004515 8.0e-140 501.5 563 63.9
PGSC0003DMG400013344 Solanum tuberosum HOM05D003850 ORTHO05D004515 1.2e-138 497.7 506 63.6
Solyc11g012150.3 Solanum lycopersicum HOM05D003850 ORTHO05D004515 2.0e-138 496.9 506 64.0
CAN.G1186.28 Capsicum annuum HOM05D003850 ORTHO05D004515 4.4e-138 495.7 550 62.9
HanXRQChr15g0470091 Helianthus annuus HOM05D003850 ORTHO05D004515 7.5e-138 495.0 530 67.4
Actinidia39269 Actinidia chinensis HOM05D003850 ORTHO05D004515 4.9e-137 492.3 359 76.6
PSO339G3925 Papaver somniferum HOM05D003850 ORTHO05D004515 2.4e-136 490.0 552 63.8
Peaxi162Scf00558g00516 Petunia axillaris HOM05D003850 ORTHO05D004515 4.1e-136 489.2 488 67.6
SHI24464 Sapria himalayana HOM05D003850 ORTHO05D004515 7.0e-136 488.4 539 57.1
unitig_748.g7103 Utricularia gibba HOM05D003850 ORTHO05D004515 7.0e-136 488.4 539 61.4
FAN21G1422 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.0e-134 484.6 580 58.6
Hund23984 Selenicereus undatus HOM05D003850 ORTHO05D004515 1.0e-134 484.6 557 65.2
BcaC01g04577 Brassica carinata HOM05D003850 ORTHO05D004515 3.8e-134 482.6 550 64.7
C03p36090 Brassica napus HOM05D003850 ORTHO05D004515 3.8e-134 482.6 548 64.8
BolC3t15918H Brassica oleracea HOM05D003850 ORTHO05D004515 3.8e-134 482.6 550 64.7
A03p29830 Brassica napus HOM05D003850 ORTHO05D004515 1.6e-132 477.2 548 64.2
BraA03t12173Z Brassica rapa HOM05D003850 ORTHO05D004515 4.7e-132 475.7 550 63.6
vmacro03646 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 8.0e-132 474.9 565 53.6
Thhalv10028564m.g Eutrema salsugineum HOM05D003850 ORTHO05D004515 2.4e-128 463.4 547 64.4
BcaB01g01757 Brassica carinata HOM05D003850 ORTHO05D004515 7.0e-128 461.8 539 60.9
Sp6g04900 Schrenkiella parvula HOM05D003850 ORTHO05D004515 1.7e-126 457.2 554 63.5
MELO3C012788.2 Cucumis melo HOM05D003850 ORTHO05D004515 1.5e-125 454.1 466 68.7
Lj8A171G42 Lonicera japonica HOM05D003850 ORTHO05D004515 8.0e-124 448.4 546 50.5
EL10Ac8g20176 Beta vulgaris HOM05D003850 ORTHO05D004515 1.1e-123 448.0 548 62.8
BolC9t56221H Brassica oleracea HOM05D003850 ORTHO05D004515 5.2e-123 445.7 553 60.2
CDE04G2591 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 3.4e-122 443.0 547 58.5
BraA09t38246Z Brassica rapa HOM05D003850 ORTHO05D004515 5.4e-120 435.6 553 57.1
Lsat_1_v5_gn_7_13561 Lactuca sativa HOM05D003850 ORTHO05D004515 7.0e-120 435.3 500 65.2
BcaB01g02623 Brassica carinata HOM05D003850 ORTHO05D004515 6.0e-119 432.2 537 60.0
RhsimUnG0109100 Rhododendron simsii HOM05D003850 ORTHO05D004515 3.9e-118 429.5 533 53.7
Oeu044421.3 Olea europaea HOM05D003850 ORTHO05D004515 5.0e-118 429.1 839 40.6
Zm00001eb224360 Zea mays HOM05D003850 ORTHO05D004515 1.8e-115 420.6 488 59.0
Medtr2g025620 Medicago truncatula HOM05D003850 ORTHO05D004515 1.1e-112 411.4 524 63.5
A09p26740 Brassica napus HOM05D003850 ORTHO05D004515 7.8e-111 405.2 544 55.3
Rhsim13G0146600 Rhododendron simsii HOM05D003850 ORTHO05D004515 1.3e-110 404.4 587 48.7
Mapoly0105s0015 Marchantia polymorpha HOM05D003850 ORTHO05D004515 2.0e-106 390.6 553 49.7
CDE06G1774 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 4.4e-106 389.4 321 65.4
RcHm_v2.0_Chr5g0007791 Rosa chinensis HOM05D003850 ORTHO05D004515 9.9e-106 388.3 556 52.5
BcaC04g21251 Brassica carinata HOM05D003850 ORTHO05D004515 4.9e-105 386.0 542 55.7
C09p33830 Brassica napus HOM05D003850 ORTHO05D004515 4.9e-105 386.0 542 55.7
Pp3c3_2280 Physcomitrium patens HOM05D003850 ORTHO05D004515 1.9e-104 384.0 558 50.4
Zm00001eb398520 Zea mays HOM05D003850 ORTHO05D004515 9.0e-99 365.2 540 42.2
Duzib235G1223 Durio zibethinus HOM05D003850 ORTHO05D004515 1.1e-96 358.2 411 63.7
QL09p006300 Quercus lobata HOM05D003850 ORTHO05D004515 2.4e-96 357.1 365 70.7
FvH4_2g22070 Fragaria vesca HOM05D003850 ORTHO05D004515 3.5e-95 353.2 553 44.1
FvH4_3g04782 Fragaria vesca HOM05D003850 ORTHO05D004515 6.0e-95 352.4 554 47.1
FAN16G3024 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.0e-94 351.7 558 46.6
FAN11G3915 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.7e-94 350.9 558 46.6
FAN21G1676 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.9e-93 347.4 559 46.3
FAN03G2951 Fragaria x ananassa HOM05D003850 ORTHO05D004515 4.3e-93 346.3 559 46.2
FAN24G0125 Fragaria x ananassa HOM05D003850 ORTHO05D008045 1.3e-92 344.7 553 43.9
AUR62012783 Chenopodium quinoa HOM05D003850 ORTHO05D004515 1.6e-92 344.4 424 54.7
TPR.G13041 Trifolium pratense HOM05D003850 ORTHO05D004515 2.6e-90 337.0 368 72.6
TPR.G34491 Trifolium pratense HOM05D003850 ORTHO05D004515 2.6e-90 337.0 195 82.1
DCAR_025996 Daucus carota HOM05D003850 ORTHO05D004515 1.3e-89 334.7 443 60.5
Dinv07398 Davidia involucrata HOM05D003850 ORTHO05D004515 3.1e-83 313.5 324 73.8
AagrBONN_evm.TU.Sc2ySwM_228.4136 Anthoceros agrestis HOM05D003850 ORTHO05D004515 7.6e-74 282.3 346 53.2
Sc17g0007710 Simmondsia chinensis HOM05D003850 ORTHO05D004515 1.3e-70 271.6 370 67.3
SEGI_38016 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 4.5e-66 256.5 331 52.6
Peaxi162Scf00015g02110 Petunia axillaris HOM05D003850 ORTHO05D004515 1.1e-64 251.9 310 54.8
FAN25G2646 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.0e-54 218.8 511 38.9
HPP92_001646 Vanilla planifolia HOM05D003850 ORTHO05D004515 4.4e-53 213.4 244 61.5
Actinidia11880 Actinidia chinensis HOM05D003850 ORTHO05D004515 1.1e-48 198.7 353 49.0
HPP92_001645 Vanilla planifolia HOM05D003850 ORTHO05D004515 2.4e-35 154.5 101 68.3
Lsat_1_v5_gn_5_64561 Lactuca sativa HOM05D003952 ORTHO05D004515 1.4e-30 138.7 165 67.3
Gorai.002G145900 Gossypium raimondii HOM05D003850 ORTHO05D004515 4.0e-30 137.1 176 70.5
CBR_g38333 Chara braunii HOM05D000019 ORTHO05D000002 7.5e-29 132.9 241 38.2
CDE06G0619 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 9.5e-24 115.9 210 49.0
PSO339G5270 Papaver somniferum HOM05D003850 ORTHO05D004515 9.5e-24 115.9 213 43.7
arahy.Tifrunner.gnm1.ann1.5H9H8Z Arachis hypogaea HOM05D003850 ORTHO05D004515 3.0e-22 110.9 110 64.5
AagrBONN_evm.TU.Sc2ySwM_228.3786 Anthoceros agrestis HOM05D003850 ORTHO05D004515 1.2e-21 109.0 136 42.6
arahy.Tifrunner.gnm1.ann1.4A53N1 Arachis hypogaea HOM05D003850 ORTHO05D004515 2.0e-21 108.2 113 62.8
RcHm_v2.0_Chr6g0288941 Rosa chinensis HOM05D003850 ORTHO05D004515 2.6e-21 107.8 280 36.1
PSO384G4333 Papaver somniferum HOM05D003850 ORTHO05D004515 2.2e-20 104.8 176 46.0
VMungo0720G0179 Vigna mungo HOM05D003850 ORTHO05D004515 1.2e-18 99.0 51 86.3
Eucgr.A01650 Eucalyptus grandis HOM05D002251 ORTHO05D004515 2.0e-18 98.2 54 75.9
arahy.Tifrunner.gnm1.ann1.N7GRQP Arachis hypogaea HOM05D003850 ORTHO05D004515 2.7e-18 97.8 74 74.3
arahy.Tifrunner.gnm1.ann1.UE8YUV Arachis hypogaea HOM05D003850 ORTHO05D004515 2.7e-18 97.8 74 74.3
Gohir.D01G119450 Gossypium hirsutum HOM05D003850 ORTHO05D004515 2.7e-18 97.8 76 84.2
TAR629G2548 Trochodendron aralioides HOM05D003850 ORTHO05D004515 8.6e-17 92.8 99 46.5
Lsat_1_v5_gn_3_78300 Lactuca sativa HOM05D002115 ORTHO05D002263 4.3e-16 90.5 56 80.4
HPP92_001647 Vanilla planifolia HOM05D003850 ORTHO05D004515 1.2e-15 89.0 111 50.5
Nitab4.5_0013082g0020 Nicotiana tabacum HOM05D003850 ORTHO05D004515 8.0e-15 86.3 98 50.0
SEGI_29277 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 1.0e-14 85.9 208 37.5
AagrBONN_evm.TU.Sc2ySwM_228.3787 Anthoceros agrestis HOM05D003850 ORTHO05D004515 6.8e-14 83.2 244 36.1
arahy.Tifrunner.gnm1.ann1.GFC3N0 Arachis hypogaea HOM05D003850 ORTHO05D004515 7.5e-13 79.7 94 55.3
Nitab4.5_0006771g0010 Nicotiana tabacum HOM05D003850 ORTHO05D004515 7.5e-13 79.7 100 50.0
Aqoxy1G04111 Aquilegia oxysepala HOM05D004257 ORTHO05D004515 5.4e-11 73.6 65 53.8
CAN.G1186.27 Capsicum annuum HOM05D001620 ORTHO05D005461 1.6e-10 72.0 59 61.0
FAN21G0780 Fragaria x ananassa HOM05D003850 ORTHO05D004515 2.0e-10 71.6 212 40.6
Aa31LG9G10030 Aethionema arabicum HOM05D003850 ORTHO05D004515 6.2e-07 60.1 54 59.3
CARHR253550 Cardamine hirsuta HOM05D003850 ORTHO05D004515 1.4e-06 58.9 64 48.4
CBR_g38329 Chara braunii HOM05D003850 ORTHO05D004515 5.2e-06 57.0 91 36.3


User provided reference genes

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