Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G308800 Phaseolus vulgaris HOM05D006129 ORTHO05D007446 0.0e+00 1528.8 761 100.0
VMungo0464G0688 Vigna mungo HOM05D006129 ORTHO05D007446 0.0e+00 1387.5 762 90.4
Glyma.20G009700 Glycine max HOM05D006129 ORTHO05D007446 0.0e+00 1278.8 742 86.5
Glyma.07G178800 Glycine max HOM05D006129 ORTHO05D007446 0.0e+00 1268.4 759 83.8
Ca_13480_v3 Cicer arietinum L. HOM05D006129 ORTHO05D007446 0.0e+00 1153.3 785 74.6
Lalb_Chr10g0095451 Lupinus albus HOM05D006129 ORTHO05D007446 0.0e+00 1145.2 765 74.5
Lj2g0010354 Lotus japonicus HOM05D006129 ORTHO05D007446 0.0e+00 1135.9 731 77.8
Medtr1g026035 Medicago truncatula HOM05D006129 ORTHO05D007446 0.0e+00 1118.6 759 74.2
TPR.G26422 Trifolium pratense HOM05D006129 ORTHO05D007446 0.0e+00 1109.7 754 73.7
arahy.Tifrunner.gnm1.ann1.769PPM Arachis hypogaea HOM05D006129 ORTHO05D007446 5.0e-305 1050.8 745 71.9
CiPaw.05G055300 Carya illinoinensis HOM05D006129 ORTHO05D007446 3.3e-293 1011.5 763 64.7
Haze_01881 Corylus avellana HOM05D006129 ORTHO05D007446 1.3e-289 999.6 785 62.5
Cfa005424 Carpinus fangiana HOM05D006129 ORTHO05D007446 1.7e-289 999.2 784 62.1
CANSAT25G2181 Cannabis sativa HOM05D006129 ORTHO05D007446 1.8e-286 989.2 774 62.7
QL11p038411 Quercus lobata HOM05D006129 ORTHO05D007446 2.3e-286 988.8 821 60.7
GSVIVG01031785001 Vitis vinifera HOM05D006129 ORTHO05D007446 5.2e-286 987.6 667 69.4
Duzib248G0151 Durio zibethinus HOM05D006129 ORTHO05D007446 1.1e-283 979.9 690 67.8
Thecc.02G095400 Theobroma cacao HOM05D006129 ORTHO05D007446 1.1e-283 979.9 690 68.0
Atru.BG.82.p Acer truncatum HOM05D006129 ORTHO05D007446 5.9e-282 974.2 658 69.0
TWI31G0609 Tripterygium wilfordii HOM05D006129 ORTHO05D007446 1.7e-281 972.6 691 66.7
TWI79G0519 Tripterygium wilfordii HOM05D006129 ORTHO05D007446 1.7e-281 972.6 691 66.9
COL.COLO4_11724 Corchorus olitorius HOM05D006129 ORTHO05D007446 8.6e-281 970.3 693 67.0
MD10G1089000 Malus domestica HOM05D006129 ORTHO05D007446 2.5e-280 968.8 787 62.3
RcHm_v2.0_Chr6g0259211 Rosa chinensis HOM05D006129 ORTHO05D007446 6.8e-278 960.7 690 66.4
Dinv42121 Davidia involucrata HOM05D006129 ORTHO05D007446 5.7e-277 957.6 698 66.0
ClCG07G001810 Citrullus lanatus HOM05D006129 ORTHO05D007446 2.8e-276 955.3 690 67.2
CSS0025307 Camellia sinensis var. sinensis HOM05D006129 ORTHO05D007446 5.9e-274 947.6 688 66.6
CSS0048591 Camellia sinensis var. sinensis HOM05D006129 ORTHO05D007446 5.9e-274 947.6 688 66.6
Ciclev10027854m.g Citrus clementina HOM05D006129 ORTHO05D007446 1.7e-273 946.0 694 65.9
Gohir.D01G006000 Gossypium hirsutum HOM05D006129 ORTHO05D007446 2.3e-273 945.7 690 65.7
FvH4_2g06900 Fragaria vesca HOM05D006129 ORTHO05D007446 4.3e-272 941.4 683 65.0
Cpa.g.sc62.53 Carica papaya HOM05D006129 ORTHO05D007446 5.6e-272 941.0 697 64.8
Gorai.002G007000 Gossypium raimondii HOM05D006129 ORTHO05D007446 1.6e-271 939.5 690 65.2
Lj5P206T15 Lonicera japonica HOM05D006129 ORTHO05D007446 1.0e-270 936.8 752 61.6
Sed0004701 Sechium edule HOM05D006129 ORTHO05D007446 1.4e-270 936.4 694 65.3
FAN27G0179 Fragaria x ananassa HOM05D006129 ORTHO05D007446 3.0e-270 935.3 691 64.3
Gohir.A01G005900 Gossypium hirsutum HOM05D006129 ORTHO05D007446 3.0e-270 935.3 690 64.8
Prupe.8G116000 Prunus persica HOM05D006129 ORTHO05D007446 3.0e-270 935.3 772 60.8
MELO3C026699.2 Cucumis melo HOM05D006129 ORTHO05D007446 4.0e-270 934.9 689 65.3
Nn4g23272 Nelumbo nucifera HOM05D006129 ORTHO05D007446 3.4e-269 931.8 691 65.4
FAN24G2628 Fragaria x ananassa HOM05D006129 ORTHO05D007446 4.4e-269 931.4 683 64.4
CsaV3_3G028800 Cucumis sativus L. HOM05D006129 ORTHO05D007446 2.9e-268 928.7 696 64.8
Potri.009G106800 Populus trichocarpa HOM05D006129 ORTHO05D007446 2.9e-268 928.7 693 65.5
Manes.17G094600 Manihot esculenta HOM05D006129 ORTHO05D007446 3.7e-268 928.3 687 64.8
FAN15G2181 Fragaria x ananassa HOM05D006129 ORTHO05D007446 5.4e-267 924.5 739 61.4
vmacro02172 Vaccinium macrocarpon HOM05D006129 ORTHO05D007446 1.7e-265 919.5 744 61.4
Medtr0381s0010 Medicago truncatula HOM05D006129 ORTHO05D007446 4.3e-264 914.8 610 74.4
PGR042G1055 Punica granatum HOM05D006129 ORTHO05D007446 9.5e-264 913.7 766 59.0
Eucgr.L01320 Eucalyptus grandis HOM05D006129 ORTHO05D007446 2.8e-263 912.1 694 63.7
Rhsim11G0169300 Rhododendron simsii HOM05D006129 ORTHO05D007446 6.8e-262 907.5 743 61.1
THA.LOC104807348 Tarenaya hassleriana HOM05D006129 ORTHO05D007446 2.4e-259 899.0 704 60.9
Aqoxy3G03484 Aquilegia oxysepala HOM05D006129 ORTHO05D007446 3.0e-257 892.1 778 58.0
DCAR_003623 Daucus carota HOM05D006129 ORTHO05D007446 8.6e-257 890.6 679 62.3
Dinv23594 Davidia involucrata HOM05D006129 ORTHO05D007446 3.1e-254 882.1 688 63.1
TAR371G0476 Trochodendron aralioides HOM05D006129 ORTHO05D007446 4.0e-254 881.7 625 67.5
Carub.0003s2972 Capsella rubella HOM05D006129 ORTHO05D007446 6.4e-252 874.4 682 61.4
Thhalv10022548m.g Eutrema salsugineum HOM05D006129 ORTHO05D007446 3.2e-251 872.1 696 60.5
Sp3g29130 Schrenkiella parvula HOM05D006129 ORTHO05D007446 9.2e-251 870.5 737 59.0
Sc08g0000140 Simmondsia chinensis HOM05D006129 ORTHO05D007446 2.1e-250 869.4 663 63.0
AL3G47590 Arabidopsis lyrata HOM05D006129 ORTHO05D007446 2.7e-250 869.0 652 62.4
CARHR106180 Cardamine hirsuta HOM05D006129 ORTHO05D007446 1.6e-247 859.8 700 59.7
A07p04960 Brassica napus HOM05D006129 ORTHO05D007446 5.2e-246 854.7 747 57.3
Oeu057674.1 Olea europaea HOM05D006129 ORTHO05D007446 1.5e-245 853.2 686 59.3
BraA07t28289Z Brassica rapa HOM05D006129 ORTHO05D007446 7.6e-245 850.9 732 57.8
AT2G15820 Arabidopsis thaliana HOM05D006129 ORTHO05D007446 6.4e-244 847.8 685 59.4
BcaC06g36090 Brassica carinata HOM05D006129 ORTHO05D007446 9.2e-243 844.0 758 56.6
C07p07940 Brassica napus HOM05D006129 ORTHO05D007446 9.2e-243 844.0 758 56.6
BolC7t41212H Brassica oleracea HOM05D006129 ORTHO05D007446 9.2e-243 844.0 758 56.6
Nitab4.5_0007303g0010 Nicotiana tabacum HOM05D006129 ORTHO05D007446 1.0e-241 840.5 761 56.1
BcaB03g16332 Brassica carinata HOM05D006129 ORTHO05D007446 6.6e-241 837.8 658 60.9
Nitab4.5_0001453g0090 Nicotiana tabacum HOM05D006129 ORTHO05D007446 8.7e-241 837.4 718 57.2
Peaxi162Scf00789g00530 Petunia axillaris HOM05D006129 ORTHO05D007446 8.7e-241 837.4 764 55.8
CAN.G644.34 Capsicum annuum HOM05D006129 ORTHO05D007446 1.1e-240 837.0 661 60.1
Actinidia12976 Actinidia chinensis HOM05D006129 ORTHO05D007446 2.5e-240 835.9 689 60.1
Aa31LG8G13380 Aethionema arabicum HOM05D006129 ORTHO05D007446 1.3e-236 823.5 670 60.4
Lsat_1_v5_gn_5_113460 Lactuca sativa HOM05D006129 ORTHO05D007446 1.9e-235 819.7 695 57.4
ECA234G4125 Erigeron canadensis HOM05D006129 ORTHO05D007446 4.2e-235 818.5 725 54.9
Migut.B00306 Erythranthe guttata HOM05D006129 ORTHO05D007446 1.0e-233 813.9 687 56.5
Solyc11g066850.3 Solanum lycopersicum HOM05D006129 ORTHO05D007446 3.9e-233 812.0 661 57.6
HanXRQChr10g0303221 Helianthus annuus HOM05D006129 ORTHO05D007446 3.3e-232 808.9 682 56.3
MSTRG.20134 Avicennia marina HOM05D006129 ORTHO05D007446 1.6e-231 806.6 689 57.2
FAN20G2787 Fragaria x ananassa HOM05D006129 ORTHO05D007446 1.4e-230 803.5 610 64.3
AUR62011424 Chenopodium quinoa HOM05D006129 ORTHO05D007446 3.8e-228 795.4 678 56.2
EL10Ac9g21818 Beta vulgaris HOM05D006129 ORTHO05D007446 2.7e-226 789.3 746 53.5
Ah.01g006750 Amaranthus hybridus HOM05D006129 ORTHO05D007446 1.8e-225 786.6 660 56.5
unitig_744.g24241 Utricularia gibba HOM05D006129 ORTHO05D007446 4.8e-223 778.5 686 53.6
ATR0665G475 Amborella trichopoda HOM05D006129 ORTHO05D007446 9.0e-222 774.2 688 55.4
Sabra09G0081600 Salix brachista HOM05D006129 ORTHO05D007446 2.6e-221 772.7 633 61.5
HPP92_022045 Vanilla planifolia HOM05D006129 ORTHO05D007446 5.8e-221 771.5 693 54.7
PGSC0003DMG400026525 Solanum tuberosum HOM05D006129 ORTHO05D007446 1.7e-220 770.0 648 56.8
Sopen11g026560 Solanum pennellii HOM05D006129 ORTHO05D007446 3.9e-217 758.8 648 56.3
Zm00001eb251880 Zea mays HOM05D006129 ORTHO05D007446 1.9e-216 756.5 677 54.2
Os02g0702000 Oryza sativa ssp. japonica HOM05D006129 ORTHO05D007446 4.8e-215 751.9 665 52.9
AUR62016636 Chenopodium quinoa HOM05D006129 ORTHO05D007446 1.5e-213 746.9 607 58.6
SGA_v2.0_scaffold58G20604 Striga asiatica HOM05D006129 ORTHO05D007446 8.7e-209 731.1 665 52.8
Psat6g001360 Pisum sativum HOM05D006129 ORTHO05D007446 2.5e-208 729.6 770 53.9
TAR629G1168 Trochodendron aralioides HOM05D006129 ORTHO05D007446 1.4e-198 697.2 533 63.4
Eucgr.G01504 Eucalyptus grandis HOM05D006129 ORTHO05D007446 3.8e-196 689.1 695 51.7
Eucgr.L00820 Eucalyptus grandis HOM05D006129 ORTHO05D007446 1.7e-175 620.5 464 64.9
SEGI_31419 Sequoiadendron giganteum HOM05D006129 ORTHO05D007446 2.3e-169 600.1 758 43.4
CDE04G1903 Ceratophyllum demersum HOM05D006129 ORTHO05D007446 3.5e-165 586.3 644 46.9
Cc02_g18440 Coffea canephora HOM05D006129 ORTHO05D007446 7.6e-136 488.8 455 53.6
Hund00318 Selenicereus undatus HOM05D006129 ORTHO05D007446 1.7e-135 487.6 370 61.6
Atru.chr5.2887 Acer truncatum HOM05D006129 ORTHO05D007446 2.4e-121 440.7 485 48.0
TAR371G0992 Trochodendron aralioides HOM05D006129 ORTHO05D007446 2.9e-111 407.1 697 37.9
Atru.chr5.2823 Acer truncatum HOM05D006129 ORTHO05D007446 6.7e-108 396.0 493 46.0
QL11p038542 Quercus lobata HOM05D006129 ORTHO05D007446 1.9e-102 377.9 304 63.5
Pp3c25_10050 Physcomitrium patens HOM05D006129 ORTHO05D007446 3.7e-90 337.0 655 31.3
TAR371G0058 Trochodendron aralioides HOM05D006129 ORTHO05D007446 2.5e-86 324.3 269 59.9
Atru.chr5.2881 Acer truncatum HOM05D006129 ORTHO05D007446 1.1e-81 308.9 267 55.4
Atru.chr5.2826 Acer truncatum HOM05D006129 ORTHO05D007446 3.4e-80 303.9 285 57.2
AagrBONN_evm.TU.Sc2ySwM_344.1734 Anthoceros agrestis HOM05D006129 ORTHO05D007446 1.0e-71 275.8 647 28.1
SMO356G0628 Selaginella moellendorffii HOM05D006129 ORTHO05D007446 4.7e-69 266.9 679 26.5
Mapoly0036s0055 Marchantia polymorpha HOM05D006129 ORTHO05D007446 1.4e-60 238.8 662 25.4
AagrBONN_evm.TU.Sc2ySwM_344.5085 Anthoceros agrestis HOM05D006129 ORTHO05D007446 5.7e-51 206.8 649 24.2
TAR629G1760 Trochodendron aralioides HOM05D006129 ORTHO05D007446 2.4e-49 201.4 245 46.5
arahy.Tifrunner.gnm1.ann1.SUMB0F Arachis hypogaea HOM05D006129 ORTHO05D007446 6.1e-45 186.8 169 59.8
Cc02_g18430 Coffea canephora HOM05D006129 ORTHO05D007446 4.7e-37 160.6 102 66.7
Pp3c16_23700 Physcomitrium patens HOM05D006129 ORTHO05D007446 4.7e-37 160.6 679 22.4
Atru.chr5.2882 Acer truncatum HOM05D006129 ORTHO05D007446 1.1e-33 149.4 198 42.4
QL11p038477 Quercus lobata HOM05D006129 ORTHO05D007446 5.4e-25 120.6 165 47.3
CBR_g8924 Chara braunii HOM05D006129 ORTHO05D007446 1.7e-15 89.0 686 19.4
CBR_g19584 Chara braunii HOM05D006129 ORTHO05D007446 3.0e-15 88.2 629 19.4
RcHm_v2.0_Chr6g0302241 Rosa chinensis HOM05D006129 ORTHO05D007446 8.1e-13 80.1 50 66.0
Atru.chr5.2820 Acer truncatum HOM05D006129 ORTHO05D007446 1.8e-12 79.0 81 46.9
RcHm_v2.0_Chr1g0376021 Rosa chinensis HOM05D006129 ORTHO05D007446 9.9e-11 73.2 53 58.5
RcHm_v2.0_Chr2g0152801 Rosa chinensis HOM05D006129 ORTHO05D007446 1.7e-10 72.4 61 55.7
FvH4_3g28010 Fragaria vesca HOM05D000001 ORTHO05D000003 9.3e-09 66.6 427 19.4
FAN11G1860 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.6e-08 65.9 244 22.1
FAN25G0122 Fragaria x ananassa HOM05D000001 ORTHO05D000003 2.1e-08 65.5 243 21.0
FAN25G0874 Fragaria x ananassa HOM05D000189 ORTHO05D000474 2.1e-08 65.5 243 21.0
FAN21G2622 Fragaria x ananassa HOM05D000001 ORTHO05D000003 6.0e-08 63.9 244 21.7
TWI38G0189 Tripterygium wilfordii HOM05D007956 ORTHO05D010152 1.0e-07 63.2 239 24.7
AagrBONN_evm.TU.Sc2ySwM_362.870 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.7e-07 62.4 423 20.8
Manes.01G273600 Manihot esculenta HOM05D000300 ORTHO05D000383 1.7e-07 62.4 164 28.0
Cc02_g25250 Coffea canephora HOM05D000300 ORTHO05D000383 2.3e-07 62.0 193 28.0
ECA248G1627 Erigeron canadensis HOM05D000001 ORTHO05D000003 2.3e-07 62.0 256 23.0
FAN16G1783 Fragaria x ananassa HOM05D000001 ORTHO05D000003 2.3e-07 62.0 244 20.9
CiPaw.01G035200 Carya illinoinensis HOM05D000891 ORTHO05D000761 3.9e-07 61.2 308 24.4
Aqoxy1G02530 Aquilegia oxysepala HOM05D000001 ORTHO05D000003 5.1e-07 60.8 303 23.1
Aqoxy1G02533 Aquilegia oxysepala HOM05D000001 ORTHO05D000003 5.1e-07 60.8 303 23.1
Eucgr.J00110 Eucalyptus grandis HOM05D000001 ORTHO05D000003 5.1e-07 60.8 362 20.2
Nitab4.5_0000563g0220 Nicotiana tabacum HOM05D000300 ORTHO05D000383 5.1e-07 60.8 156 26.3
Nitab4.5_0007060g0020 Nicotiana tabacum HOM05D000300 ORTHO05D000383 5.1e-07 60.8 156 26.3
Peaxi162Scf00853g00422 Petunia axillaris HOM05D000300 ORTHO05D000383 5.1e-07 60.8 156 26.3
Lalb_Chr08g0237681 Lupinus albus HOM05D000001 ORTHO05D000003 6.6e-07 60.5 422 20.6
Lalb_Chr12g0200631 Lupinus albus HOM05D001779 ORTHO05D001753 8.7e-07 60.1 340 20.0
Manes.05G056400 Manihot esculenta HOM05D000300 ORTHO05D000383 8.7e-07 60.1 185 25.4
Solyc01g089870.3 Solanum lycopersicum HOM05D000300 ORTHO05D000383 8.7e-07 60.1 157 28.0
COL.COLO4_22110 Corchorus olitorius HOM05D000891 ORTHO05D000761 1.5e-06 59.3 226 25.7
Sopen01g035710 Solanum pennellii HOM05D000300 ORTHO05D000383 1.5e-06 59.3 157 28.0
ClCG07G009040 Citrullus lanatus HOM05D000891 ORTHO05D000761 1.9e-06 58.9 225 26.2
CsaV3_7G026080 Cucumis sativus L. HOM05D001779 ORTHO05D001753 1.9e-06 58.9 202 26.2
Prupe.7G151800 Prunus persica HOM05D000891 ORTHO05D000761 1.9e-06 58.9 276 23.9
TAR369G0412 Trochodendron aralioides HOM05D000001 ORTHO05D000003 1.9e-06 58.9 368 23.1
AagrBONN_evm.TU.Sc2ySwM_228.1156 Anthoceros agrestis HOM05D000001 ORTHO05D000003 3.3e-06 58.2 329 20.4
Migut.B00737 Erythranthe guttata HOM05D000001 ORTHO05D000003 4.3e-06 57.8 175 26.3
QL06p048956 Quercus lobata HOM05D000001 ORTHO05D000003 4.3e-06 57.8 243 22.6
RcHm_v2.0_Chr3g0448241 Rosa chinensis HOM05D000001 ORTHO05D000003 5.6e-06 57.4 242 19.8
ECA248G3482 Erigeron canadensis HOM05D000300 ORTHO05D000383 7.3e-06 57.0 168 23.2
SEGI_27186 Sequoiadendron giganteum HOM05D006156 ORTHO05D007699 7.3e-06 57.0 134 22.4
Solyc02g085650.4 Solanum lycopersicum HOM05D001985 ORTHO05D000761 7.3e-06 57.0 256 23.0
Glyma.03G108100 Glycine max HOM05D000300 ORTHO05D000383 9.6e-06 56.6 192 25.5
PSO017G3749 Papaver somniferum HOM05D000001 ORTHO05D000003 9.6e-06 56.6 161 24.8
Prupe.7G236400 Prunus persica HOM05D000001 ORTHO05D000003 9.6e-06 56.6 212 23.6
VMungo0720G2996 Vigna mungo HOM05D000001 ORTHO05D004269 9.6e-06 56.6 191 26.7


User provided reference genes

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