Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO801G0146 Papaver somniferum HOM05D003686 ORTHO05D004322 7.4e-102 374.0 207 100.0
PSO339G4974 Papaver somniferum HOM05D003686 ORTHO05D004322 1.0e-82 310.5 208 87.5
Aqoxy2G03146 Aquilegia oxysepala HOM05D003686 ORTHO05D004322 9.4e-57 224.2 204 60.8
TAR636G2878 Trochodendron aralioides HOM05D003686 ORTHO05D004322 1.9e-49 199.9 215 59.1
TAR362G1277 Trochodendron aralioides HOM05D003686 ORTHO05D004322 6.1e-48 194.9 211 57.8
Potri.003G058400 Populus trichocarpa HOM05D003686 ORTHO05D004322 4.0e-47 192.2 202 61.4
Gorai.004G053600 Gossypium raimondii HOM05D003686 ORTHO05D004322 6.8e-47 191.4 197 62.9
Eucgr.A00286 Eucalyptus grandis HOM05D003686 ORTHO05D004322 4.4e-46 188.7 205 60.5
TAR365G0683 Trochodendron aralioides HOM05D003686 ORTHO05D004322 5.7e-46 188.3 216 56.0
Glyma.10G021900 Glycine max HOM05D003686 ORTHO05D004322 1.7e-45 186.8 205 56.6
Glyma.02G152300 Glycine max HOM05D003686 ORTHO05D004322 4.9e-45 185.3 205 62.0
Gohir.A08G043900 Gossypium hirsutum HOM05D003686 ORTHO05D004322 4.9e-45 185.3 204 56.9
Nn1g08910 Nelumbo nucifera HOM05D003686 ORTHO05D004322 4.9e-45 185.3 192 58.9
CANSAT78G2257 Cannabis sativa HOM05D003686 ORTHO05D004322 6.3e-45 184.9 215 57.7
Haze_04804 Corylus avellana HOM05D003686 ORTHO05D004322 3.1e-44 182.6 207 57.0
Gohir.D08G053600 Gossypium hirsutum HOM05D003686 ORTHO05D004322 9.2e-44 181.0 197 61.9
COL.COLO4_08036 Corchorus olitorius HOM05D003686 ORTHO05D004322 1.2e-43 180.6 200 62.5
Phvul.007G166600 Phaseolus vulgaris HOM05D003686 ORTHO05D004322 7.8e-43 177.9 205 63.9
Atru.chr5.1287 Acer truncatum HOM05D003686 ORTHO05D004322 2.3e-42 176.4 204 59.3
Lalb_Chr06g0163281 Lupinus albus HOM05D003686 ORTHO05D004322 3.8e-42 175.6 207 59.9
TWI14G0352 Tripterygium wilfordii HOM05D003686 ORTHO05D004322 3.8e-42 175.6 205 60.5
FAN20G0133 Fragaria x ananassa HOM05D003686 ORTHO05D004322 5.0e-42 175.3 199 58.3
FAN27G0391 Fragaria x ananassa HOM05D003686 ORTHO05D004322 5.0e-42 175.3 199 58.3
Manes.01G213100 Manihot esculenta HOM05D003686 ORTHO05D004322 6.6e-42 174.9 201 57.7
Migut.N00130 Erythranthe guttata HOM05D003686 ORTHO05D004322 2.5e-41 172.9 189 56.6
GSVIVG01011011001 Vitis vinifera HOM05D003686 ORTHO05D004322 2.5e-41 172.9 129 71.3
QL07p015848 Quercus lobata HOM05D003686 ORTHO05D004322 4.3e-41 172.2 206 54.9
QL93p0358_0011 Quercus lobata HOM05D003686 ORTHO05D004322 5.6e-41 171.8 205 56.1
Gorai.007G132200 Gossypium raimondii HOM05D003686 ORTHO05D004322 7.3e-41 171.4 203 63.5
Eucgr.B02749 Eucalyptus grandis HOM05D003686 ORTHO05D004322 9.5e-41 171.0 206 64.6
Gohir.A11G118400 Gossypium hirsutum HOM05D003686 ORTHO05D004322 1.2e-40 170.6 203 62.6
QL04p005272 Quercus lobata HOM05D003686 ORTHO05D004322 1.6e-40 170.2 206 52.4
FAN15G3346 Fragaria x ananassa HOM05D003686 ORTHO05D004322 2.1e-40 169.9 202 57.4
Os02g0266100 Oryza sativa ssp. japonica HOM05D003686 ORTHO05D004322 2.1e-40 169.9 125 72.0
VMungo0720G0802 Vigna mungo HOM05D003686 ORTHO05D004322 2.1e-40 169.9 214 54.7
Gohir.D11G123300 Gossypium hirsutum HOM05D003686 ORTHO05D004322 2.8e-40 169.5 202 53.5
FvH4_2g24650 Fragaria vesca HOM05D003686 ORTHO05D004322 4.7e-40 168.7 199 57.3
RcHm_v2.0_Chr6g0292481 Rosa chinensis HOM05D003686 ORTHO05D004322 4.7e-40 168.7 203 53.2
Solyc01g067830.3 Solanum lycopersicum HOM05D003686 ORTHO05D004322 4.7e-40 168.7 190 54.2
Lalb_Chr02g0143061 Lupinus albus HOM05D003686 ORTHO05D004322 6.1e-40 168.3 205 59.0
TWI23G0547 Tripterygium wilfordii HOM05D003686 ORTHO05D004322 6.1e-40 168.3 198 63.1
CiPaw.07G099200 Carya illinoinensis HOM05D003686 ORTHO05D004322 1.8e-39 166.8 205 56.1
Ciclev10022350m.g Citrus clementina HOM05D003686 ORTHO05D004322 1.8e-39 166.8 192 65.6
CDE11G0890 Ceratophyllum demersum HOM05D003686 ORTHO05D004322 2.3e-39 166.4 131 68.7
Sed0010038 Sechium edule HOM05D003686 ORTHO05D004322 4.0e-39 165.6 192 59.4
Manes.05G068800 Manihot esculenta HOM05D003686 ORTHO05D004322 8.9e-39 164.5 199 60.3
CARHR251560 Cardamine hirsuta HOM05D003686 ORTHO05D004322 1.2e-38 164.1 126 68.3
Actinidia00703 Actinidia chinensis HOM05D003686 ORTHO05D004322 1.5e-38 163.7 205 56.1
Sopen01g029780 Solanum pennellii HOM05D003686 ORTHO05D004322 2.0e-38 163.3 190 58.9
AT4G03120 Arabidopsis thaliana HOM05D003686 ORTHO05D004322 2.6e-38 162.9 123 69.9
Duzib133G0241 Durio zibethinus HOM05D003686 ORTHO05D004322 2.6e-38 162.9 203 58.1
CAN.G185.6 Capsicum annuum HOM05D003686 ORTHO05D004322 3.4e-38 162.5 185 61.1
PGR031G1643 Punica granatum HOM05D003686 ORTHO05D004322 4.4e-38 162.2 131 70.2
arahy.Tifrunner.gnm1.ann1.MV1AMG Arachis hypogaea HOM05D003686 ORTHO05D004322 5.8e-38 161.8 204 58.3
DCAR_007018 Daucus carota HOM05D003686 ORTHO05D004322 5.8e-38 161.8 198 52.5
Nn2g12370 Nelumbo nucifera HOM05D003686 ORTHO05D004322 5.8e-38 161.8 198 54.0
TPR.G15798 Trifolium pratense HOM05D003686 ORTHO05D004322 5.8e-38 161.8 205 58.5
Ca_10377_v3 Cicer arietinum L. HOM05D003686 ORTHO05D004322 7.5e-38 161.4 212 52.8
Ca_29655_v3 Cicer arietinum L. HOM05D003686 ORTHO05D004322 7.5e-38 161.4 212 52.8
Prupe.8G251800 Prunus persica HOM05D003686 ORTHO05D004322 9.8e-38 161.0 122 69.7
MSTRG.21821 Avicennia marina HOM05D003686 ORTHO05D004322 2.2e-37 159.8 129 66.7
ATR0706G002 Amborella trichopoda HOM05D003686 ORTHO05D004322 6.4e-37 158.3 220 48.2
Cfa010467 Carpinus fangiana HOM05D003686 ORTHO05D004322 8.3e-37 157.9 126 69.8
ClCG09G006530 Citrullus lanatus HOM05D003686 ORTHO05D004322 1.1e-36 157.5 191 59.7
Medtr1g088990 Medicago truncatula HOM05D003686 ORTHO05D004322 1.1e-36 157.5 212 59.0
BcaB05g23688 Brassica carinata HOM05D003686 ORTHO05D004322 1.4e-36 157.1 127 68.5
BcaB05g23689 Brassica carinata HOM05D003686 ORTHO05D004322 1.4e-36 157.1 127 68.5
Carub.0006s3393 Capsella rubella HOM05D003686 ORTHO05D004322 1.9e-36 156.8 122 67.2
MD11G1297300 Malus domestica HOM05D003686 ORTHO05D004322 4.1e-36 155.6 206 51.9
Sp6g03160 Schrenkiella parvula HOM05D003686 ORTHO05D004322 4.1e-36 155.6 123 69.1
Zm00001eb203990 Zea mays HOM05D003686 ORTHO05D004322 4.1e-36 155.6 128 64.1
THA.LOC104826011 Tarenaya hassleriana HOM05D003686 ORTHO05D004322 7.0e-36 154.8 126 66.7
PSO384G1591 Papaver somniferum HOM05D000185 ORTHO05D000105 1.2e-35 154.1 193 51.8
Lj1g0025208 Lotus japonicus HOM05D003686 ORTHO05D004322 1.6e-35 153.7 198 49.0
Lj5g0005016 Lotus japonicus HOM05D003686 ORTHO05D004322 1.6e-35 153.7 221 47.5
A03p30600 Brassica napus HOM05D003686 ORTHO05D004322 7.8e-35 151.4 123 67.5
CsaV3_7G028310 Cucumis sativus L. HOM05D003686 ORTHO05D004322 7.8e-35 151.4 191 60.7
Medtr7g107640 Medicago truncatula HOM05D003686 ORTHO05D004322 1.0e-34 151.0 126 69.0
PSO384G1636 Papaver somniferum HOM05D000185 ORTHO05D000105 1.0e-34 151.0 193 51.3
Thecc.10G102800 Theobroma cacao HOM05D003686 ORTHO05D004322 1.0e-34 151.0 112 70.5
CiPaw.08G100800 Carya illinoinensis HOM05D003686 ORTHO05D004322 1.3e-34 150.6 198 55.1
Dinv11293 Davidia involucrata HOM05D003686 ORTHO05D004322 1.3e-34 150.6 217 47.0
Thhalv10028986m.g Eutrema salsugineum HOM05D003686 ORTHO05D004322 1.7e-34 150.2 201 61.2
Rhsim13G0017700 Rhododendron simsii HOM05D003686 ORTHO05D004322 2.3e-34 149.8 216 47.2
Dinv11297 Davidia involucrata HOM05D003686 ORTHO05D004322 3.0e-34 149.4 217 47.0
MD03G1275200 Malus domestica HOM05D003686 ORTHO05D004322 3.9e-34 149.1 221 47.1
Cpa.g.sc9.157 Carica papaya HOM05D003686 ORTHO05D004322 6.6e-34 148.3 199 55.8
Solyc06g008860.3 Solanum lycopersicum HOM05D003686 ORTHO05D004322 6.6e-34 148.3 201 47.3
BcaB01g02510 Brassica carinata HOM05D003686 ORTHO05D004322 1.1e-33 147.5 115 68.7
A09p02440 Brassica napus HOM05D003686 ORTHO05D004322 1.1e-33 147.5 187 51.3
BraA09t35891Z Brassica rapa HOM05D003686 ORTHO05D004322 1.1e-33 147.5 187 51.3
vmacro17192 Vaccinium macrocarpon HOM05D003686 ORTHO05D004322 1.1e-33 147.5 201 46.8
BraA03t12240Z Brassica rapa HOM05D003686 ORTHO05D004322 1.9e-33 146.7 121 66.9
Peaxi162Scf01364g00015 Petunia axillaris HOM05D003686 ORTHO05D004322 1.9e-33 146.7 106 70.8
BcaC01g06704 Brassica carinata HOM05D003686 ORTHO05D004322 2.5e-33 146.4 115 67.8
C03p37160 Brassica napus HOM05D003686 ORTHO05D004322 3.3e-33 146.0 126 65.9
DCAR_012430 Daucus carota HOM05D003686 ORTHO05D004322 4.3e-33 145.6 197 51.3
Duzib138G0197 Durio zibethinus HOM05D003686 ORTHO05D004322 4.3e-33 145.6 202 56.4
PGSC0003DMG400022854 Solanum tuberosum HOM05D003686 ORTHO05D004322 4.3e-33 145.6 187 55.1
BolC3t16013H Brassica oleracea HOM05D003686 ORTHO05D004322 5.6e-33 145.2 121 66.1
Mapoly0103s0046 Marchantia polymorpha HOM05D003686 ORTHO05D004322 5.6e-33 145.2 134 61.9
Sopen06g003610 Solanum pennellii HOM05D003686 ORTHO05D004322 5.6e-33 145.2 201 46.8
PGSC0003DMG400021997 Solanum tuberosum HOM05D003686 ORTHO05D004322 5.6e-33 145.2 201 47.8
Ca_09109_v3 Cicer arietinum L. HOM05D003686 ORTHO05D004322 7.3e-33 144.8 175 53.1
Lsat_1_v5_gn_5_188760 Lactuca sativa HOM05D003686 ORTHO05D004322 9.5e-33 144.4 209 52.6
BcaB01g01979 Brassica carinata HOM05D003686 ORTHO05D004322 1.2e-32 144.1 189 49.2
MELO3C015891.2 Cucumis melo HOM05D003686 ORTHO05D004322 1.2e-32 144.1 191 58.1
Nitab4.5_0000295g0050 Nicotiana tabacum HOM05D003686 ORTHO05D004322 2.1e-32 143.3 201 49.8
Psat3g024960 Pisum sativum HOM05D003686 ORTHO05D004322 3.6e-32 142.5 114 66.7
TPR.G18851 Trifolium pratense HOM05D004763 ORTHO05D007492 3.6e-32 142.5 228 44.7
Sabra03G0032800 Salix brachista HOM05D003686 ORTHO05D004322 4.7e-32 142.1 184 51.6
THA.LOC104817532 Tarenaya hassleriana HOM05D003686 ORTHO05D004322 8.0e-32 141.4 124 58.9
BraA02t07500Z Brassica rapa HOM05D003686 ORTHO05D004322 1.1e-31 141.0 121 62.8
Hma1.2p1_0643F.1_g194700 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 2.3e-31 139.8 122 65.6
Hma1.2p1_0643F.1_g194711 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 2.3e-31 139.8 122 65.6
BolC9t53184H Brassica oleracea HOM05D003686 ORTHO05D004322 4.0e-31 139.0 187 48.7
AUR62025901 Chenopodium quinoa HOM05D003686 ORTHO05D004322 4.0e-31 139.0 201 49.8
AUR62025902 Chenopodium quinoa HOM05D003686 ORTHO05D004322 4.0e-31 139.0 201 49.8
AUR62029649 Chenopodium quinoa HOM05D003686 ORTHO05D004322 4.0e-31 139.0 198 49.5
ECA248G2178 Erigeron canadensis HOM05D003686 ORTHO05D004322 8.9e-31 137.9 128 63.3
unitig_61.g26148 Utricularia gibba HOM05D003686 ORTHO05D004322 8.9e-31 137.9 130 61.5
arahy.Tifrunner.gnm1.ann1.TAZ1K7 Arachis hypogaea HOM05D003686 ORTHO05D004322 1.2e-30 137.5 234 49.6
Migut.N02118 Erythranthe guttata HOM05D003686 ORTHO05D004322 1.2e-30 137.5 199 60.3
Migut.O00643 Erythranthe guttata HOM05D003686 ORTHO05D004322 1.2e-30 137.5 199 60.3
ECA247G2101 Erigeron canadensis HOM05D003686 ORTHO05D004322 2.0e-30 136.7 123 62.6
Cc01_g20160 Coffea canephora HOM05D003686 ORTHO05D004322 2.6e-30 136.3 216 42.6
SGA_v2.0_scaffold36G14363 Striga asiatica HOM05D003686 ORTHO05D004322 3.4e-30 136.0 135 59.3
Mapoly0087s0074 Marchantia polymorpha HOM05D003686 ORTHO05D004322 4.4e-30 135.6 184 48.4
Sc25g0004660 Simmondsia chinensis HOM05D003686 ORTHO05D004322 4.4e-30 135.6 128 61.7
CSS0048633 Camellia sinensis var. sinensis HOM05D003686 ORTHO05D004322 7.5e-30 134.8 206 49.0
CAN.G1006.23 Capsicum annuum HOM05D003686 ORTHO05D004322 7.5e-30 134.8 185 51.4
Hma1.2p1_0643F.1_g194695 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 7.5e-30 134.8 111 66.7
Hma1.2p1_0643F.1_g194710 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 7.5e-30 134.8 111 66.7
Nitab4.5_0004238g0080 Nicotiana tabacum HOM05D003686 ORTHO05D004322 7.5e-30 134.8 202 47.0
FAN20G1534 Fragaria x ananassa HOM05D003686 ORTHO05D004322 9.8e-30 134.4 182 54.4
BolC2t10013H Brassica oleracea HOM05D003686 ORTHO05D004322 2.2e-29 133.3 128 62.5
EL10Ac2g03326 Beta vulgaris HOM05D003686 ORTHO05D004322 2.9e-29 132.9 224 45.1
Sed0008045 Sechium edule HOM05D003686 ORTHO05D004322 4.9e-29 132.1 204 49.0
BcaC03g16209 Brassica carinata HOM05D003686 ORTHO05D004322 6.4e-29 131.7 125 62.4
Pp3c4_170 Physcomitrium patens HOM05D003686 ORTHO05D004322 6.4e-29 131.7 127 59.8
Oeu022800.1 Olea europaea HOM05D003686 ORTHO05D004322 8.3e-29 131.3 101 68.3
Oeu022802.1 Olea europaea HOM05D003686 ORTHO05D004322 8.3e-29 131.3 101 68.3
SGA_v2.0_scaffold172G39059 Striga asiatica HOM05D003686 ORTHO05D004322 8.3e-29 131.3 222 45.0
Ah.12g061550 Amaranthus hybridus HOM05D003686 ORTHO05D004322 1.1e-28 131.0 128 57.8
Pp3c12_26180 Physcomitrium patens HOM05D003686 ORTHO05D004322 1.1e-28 131.0 129 59.7
A02p25120 Brassica napus HOM05D003686 ORTHO05D004322 1.4e-28 130.6 137 59.1
FAN24G2968 Fragaria x ananassa HOM05D003686 ORTHO05D004322 2.4e-28 129.8 182 51.6
HanXRQChr01g0002781 Helianthus annuus HOM05D003686 ORTHO05D004322 2.4e-28 129.8 216 44.0
HanXRQChr11g0330151 Helianthus annuus HOM05D003686 ORTHO05D004322 3.2e-28 129.4 193 44.0
Psat6g168000 Pisum sativum HOM05D003686 ORTHO05D004322 4.1e-28 129.0 195 49.2
Nitab4.5_0001149g0030 Nicotiana tabacum HOM05D003686 ORTHO05D004322 9.2e-28 127.9 187 49.2
Nitab4.5_0001624g0040 Nicotiana tabacum HOM05D003686 ORTHO05D004322 1.6e-27 127.1 187 48.1
MSTRG.12592 Avicennia marina HOM05D003686 ORTHO05D004322 3.5e-27 125.9 103 62.1
AagrBONN_evm.TU.Sc2ySwM_228.930 Anthoceros agrestis HOM05D003686 ORTHO05D004322 1.3e-26 124.0 114 60.5
COL.COLO4_34092 Corchorus olitorius HOM05D003686 ORTHO05D004322 1.7e-26 123.6 114 61.4
SalBow8G5349 Salvia bowleyana HOM05D003686 ORTHO05D004322 3.0e-26 122.9 148 47.3
SalBow6G6913 Salvia bowleyana HOM05D003686 ORTHO05D004322 3.9e-26 122.5 193 46.1
Lj3A810T51 Lonicera japonica HOM05D003686 ORTHO05D004322 2.1e-24 116.7 172 46.5
SGA_v2.0_scaffold89G27564 Striga asiatica HOM05D003686 ORTHO05D004322 4.7e-24 115.5 232 40.5
unitig_22.g6331 Utricularia gibba HOM05D003686 ORTHO05D004322 2.3e-23 113.2 129 52.7
HPP92_021461 Vanilla planifolia HOM05D003686 ORTHO05D004322 3.1e-23 112.8 113 61.1
Psat3g182400 Pisum sativum HOM05D003686 ORTHO05D004322 5.2e-23 112.1 59 83.1
HPP92_021468 Vanilla planifolia HOM05D003686 ORTHO05D004322 2.6e-22 109.8 95 58.9
Psat0s3642g0040 Pisum sativum HOM05D000068 ORTHO05D025728 3.4e-22 109.4 59 84.7
PSO384G1563 Papaver somniferum HOM05D003686 ORTHO05D004322 1.3e-21 107.5 158 46.8
CSS0007511 Camellia sinensis var. sinensis HOM05D003686 ORTHO05D004322 2.2e-21 106.7 111 60.4
CSS0037271 Camellia sinensis var. sinensis HOM05D003686 ORTHO05D004322 2.2e-21 106.7 111 60.4
C09p02540 Brassica napus HOM05D003686 ORTHO05D004322 1.9e-20 103.6 172 44.2
Hund24902 Selenicereus undatus HOM05D003686 ORTHO05D004322 1.9e-20 103.6 111 55.9
Lj2P1184T34 Lonicera japonica HOM05D003686 ORTHO05D004322 9.2e-20 101.3 189 42.9
PSO384G1681 Papaver somniferum HOM05D003686 ORTHO05D004322 7.8e-19 98.2 79 64.6
Peaxi162Scf00936g00218 Petunia axillaris HOM05D003686 ORTHO05D004322 3.0e-18 96.3 114 57.0
vmacro02511 Vaccinium macrocarpon HOM05D003686 ORTHO05D004322 3.0e-18 96.3 91 59.3
Peaxi162Scf01067g00002 Petunia axillaris HOM05D003686 ORTHO05D004322 1.1e-17 94.4 98 59.2
Cre09.g401300 Chlamydomonas reinhardtii HOM05D003686 ORTHO05D004322 2.6e-14 83.2 43 83.7
Duzib211G0369 Durio zibethinus HOM05D003686 ORTHO05D004322 1.9e-12 77.0 83 56.6
vmacro14959 Vaccinium macrocarpon HOM05D003686 ORTHO05D004322 7.1e-12 75.1 198 35.9
Lj5g0025755 Lotus japonicus HOM05D003686 ORTHO05D009933 1.9e-09 67.0 59 59.3
QL93p0358_0018 Quercus lobata HOM05D003686 ORTHO05D004322 4.3e-09 65.9 71 59.2
QL07p015856 Quercus lobata HOM05D003686 ORTHO05D004322 3.6e-08 62.8 71 57.7
PRCOL_00005459 Prasinoderma coloniale HOM05D003686 ORTHO05D004322 1.1e-07 61.2 95 43.2
vmacro14957 Vaccinium macrocarpon HOM05D003686 ORTHO05D004322 2.0e-06 57.0 170 34.1
PSO384G1108 Papaver somniferum HOM05D000185 ORTHO05D000105 4.4e-06 55.8 37 75.7


User provided reference genes

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