Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO675G6932 Papaver somniferum HOM05D002849 ORTHO05D007186 2.1e-213 745.3 365 100.0
PSO541G1452 Papaver somniferum HOM05D002849 ORTHO05D007186 5.9e-203 710.7 365 96.4
FvH4_2g37771 Fragaria vesca HOM05D002849 ORTHO05D007186 1.9e-185 652.5 356 88.5
Prupe.1G356900 Prunus persica HOM05D002849 ORTHO05D007186 3.2e-185 651.7 357 87.7
Duzib093G2127 Durio zibethinus HOM05D002849 ORTHO05D007186 1.6e-184 649.4 344 89.8
Potri.005G083500 Populus trichocarpa HOM05D002849 ORTHO05D007186 2.1e-184 649.0 344 90.1
CSS0035799 Camellia sinensis var. sinensis HOM05D002849 ORTHO05D007186 8.0e-184 647.1 347 89.0
Thecc.08G055100 Theobroma cacao HOM05D002849 ORTHO05D007186 1.4e-183 646.4 344 89.5
TWI56G0831 Tripterygium wilfordii HOM05D002849 ORTHO05D007186 1.8e-183 646.0 344 89.2
CiPaw.08G071100 Carya illinoinensis HOM05D002849 ORTHO05D007186 8.8e-183 643.7 358 86.6
CANSAT11G2551 Cannabis sativa HOM05D002849 ORTHO05D007186 1.1e-182 643.3 359 86.6
Migut.N03194 Erythranthe guttata HOM05D002849 ORTHO05D007186 4.4e-182 641.3 344 88.7
Carub.0004s2686 Capsella rubella HOM05D002849 ORTHO05D007186 2.2e-181 639.0 345 87.8
Atru.chr13.175_Atru.chr13.176 Acer truncatum HOM05D002849 ORTHO05D007186 3.7e-181 638.3 347 87.6
AL2G36230 Arabidopsis lyrata HOM05D002849 ORTHO05D007186 3.7e-181 638.3 356 86.0
PGR083G0750 Punica granatum HOM05D002849 ORTHO05D007186 4.8e-181 637.9 358 85.5
Aqoxy6G01855 Aquilegia oxysepala HOM05D002849 ORTHO05D007186 6.3e-181 637.5 357 85.7
Manes.08G142100 Manihot esculenta HOM05D002849 ORTHO05D007186 6.3e-181 637.5 357 85.4
Dinv39573 Davidia involucrata HOM05D002849 ORTHO05D007186 8.2e-181 637.1 358 85.5
AL4G43230 Arabidopsis lyrata HOM05D002849 ORTHO05D007186 1.1e-180 636.7 349 87.1
AT2G44270 Arabidopsis thaliana HOM05D002849 ORTHO05D007186 1.1e-180 636.7 349 87.4
Ciclev10001644m.g Citrus clementina HOM05D002849 ORTHO05D007186 1.1e-180 636.7 344 88.7
Nn6g31840 Nelumbo nucifera HOM05D002849 ORTHO05D007186 1.1e-180 636.7 356 86.8
CARHR069720 Cardamine hirsuta HOM05D002849 ORTHO05D007186 1.8e-180 636.0 342 88.0
Sp4g26340 Schrenkiella parvula HOM05D002849 ORTHO05D007186 1.8e-180 636.0 343 87.8
Cc10_g00890 Coffea canephora HOM05D002849 ORTHO05D007186 2.4e-180 635.6 346 88.4
Thhalv10018770m.g Eutrema salsugineum HOM05D002849 ORTHO05D007186 3.1e-180 635.2 356 85.4
THA.LOC104811452 Tarenaya hassleriana HOM05D002849 ORTHO05D007186 1.6e-179 632.9 351 86.0
Carub.0002s2306 Capsella rubella HOM05D002849 ORTHO05D007186 2.0e-179 632.5 357 85.2
Eucgr.F03540 Eucalyptus grandis HOM05D002849 ORTHO05D007186 3.5e-179 631.7 342 87.7
Sc02g0008960 Simmondsia chinensis HOM05D002849 ORTHO05D007186 3.5e-179 631.7 355 84.8
Gohir.D05G184300 Gossypium hirsutum HOM05D002849 ORTHO05D007186 5.9e-179 630.9 355 85.4
Gorai.009G189800 Gossypium raimondii HOM05D002849 ORTHO05D007186 5.9e-179 630.9 355 85.4
Gohir.A05G181300 Gossypium hirsutum HOM05D002849 ORTHO05D007186 1.3e-178 629.8 355 85.1
Hund05132 Selenicereus undatus HOM05D002849 ORTHO05D007186 1.7e-178 629.4 342 87.4
TAR376G0763 Trochodendron aralioides HOM05D002849 ORTHO05D007186 4.2e-177 624.8 356 85.4
MELO3C011328.2 Cucumis melo HOM05D002849 ORTHO05D007186 5.5e-177 624.4 345 86.4
GSVIVG01008705001 Vitis vinifera HOM05D002849 ORTHO05D007186 7.2e-177 624.0 356 85.1
vmacro21838 Vaccinium macrocarpon HOM05D002849 ORTHO05D007186 9.4e-177 623.6 398 77.9
A05p04470 Brassica napus HOM05D002849 ORTHO05D007186 2.1e-176 622.5 381 80.3
MD08G1004800 Malus domestica HOM05D002849 ORTHO05D007186 2.7e-176 622.1 357 84.6
Sed0011348 Sechium edule HOM05D002849 ORTHO05D007186 2.7e-176 622.1 345 86.4
Rhsim06G0009600 Rhododendron simsii HOM05D002849 ORTHO05D007186 8.0e-176 620.5 392 79.3
Aa31LG1G25890 Aethionema arabicum HOM05D002849 ORTHO05D007186 1.8e-175 619.4 355 83.9
Lj1g0000302 Lotus japonicus HOM05D002849 ORTHO05D007186 1.8e-175 619.4 345 85.8
BraA05t19423Z Brassica rapa HOM05D002849 ORTHO05D007186 3.0e-175 618.6 391 78.3
Lsat_1_v5_gn_3_7661 Lactuca sativa HOM05D002849 ORTHO05D007186 2.6e-174 615.5 344 86.9
Glyma.04G002200 Glycine max HOM05D002849 ORTHO05D007186 1.7e-173 612.8 342 84.5
Medtr3g118250 Medicago truncatula HOM05D002849 ORTHO05D007186 2.2e-173 612.5 342 84.2
C04p05180 Brassica napus HOM05D002849 ORTHO05D007186 3.7e-173 611.7 364 81.3
ClCG08G013910 Citrullus lanatus HOM05D002849 ORTHO05D007186 3.7e-173 611.7 347 85.3
FAN20G1564 Fragaria x ananassa HOM05D002849 ORTHO05D007186 1.1e-172 610.1 356 83.7
FAN27G2060 Fragaria x ananassa HOM05D002849 ORTHO05D007186 1.8e-172 609.4 356 83.7
Ca_15284_v3 Cicer arietinum L. HOM05D002849 ORTHO05D007186 5.3e-172 607.8 344 83.4
Ca_15420_v3 Cicer arietinum L. HOM05D002849 ORTHO05D007186 5.3e-172 607.8 344 83.4
ECA246G5259 Erigeron canadensis HOM05D002849 ORTHO05D007186 2.7e-171 605.5 319 89.7
BolC4t22158H Brassica oleracea HOM05D002849 ORTHO05D007186 3.5e-171 605.1 393 76.3
BraA07t31703Z Brassica rapa HOM05D002849 ORTHO05D007186 5.0e-170 601.3 363 81.3
Cfa017767 Carpinus fangiana HOM05D002849 ORTHO05D007186 1.1e-169 600.1 325 88.6
QL02p013578 Quercus lobata HOM05D002849 ORTHO05D007186 1.1e-169 600.1 398 75.6
Oeu046334.1 Olea europaea HOM05D002849 ORTHO05D007186 2.5e-169 599.0 335 86.3
BcaB02g08806 Brassica carinata HOM05D002849 ORTHO05D007186 6.8e-167 590.9 359 80.8
Zm00001eb255730 Zea mays HOM05D002849 ORTHO05D007186 8.8e-167 590.5 348 81.9
BcaNung06602 Brassica carinata HOM05D002849 ORTHO05D007186 1.2e-166 590.1 359 80.5
Phvul.009G117600 Phaseolus vulgaris HOM05D002849 ORTHO05D007186 1.5e-166 589.7 342 80.7
HPP92_024207 Vanilla planifolia HOM05D002849 ORTHO05D007186 2.6e-166 589.0 353 82.2
Os02g0762300 Oryza sativa ssp. japonica HOM05D002849 ORTHO05D007186 4.4e-166 588.2 348 81.6
Hma1.2p1_1100F.1_g257100 Hydrangea macrophylla HOM05D002849 ORTHO05D007186 3.7e-165 585.1 360 80.6
MBI08_g35553_MAGBIO Magnolia biondii HOM05D002849 ORTHO05D007186 4.8e-165 584.7 347 82.4
arahy.Tifrunner.gnm1.ann1.ID8SUW Arachis hypogaea HOM05D002849 ORTHO05D007186 2.4e-164 582.4 356 79.8
Haze_22739 Corylus avellana HOM05D002849 ORTHO05D007186 5.4e-164 581.3 363 79.6
C06p50120 Brassica napus HOM05D002849 ORTHO05D007186 1.5e-161 573.2 347 81.3
Lj4A14T52 Lonicera japonica HOM05D002849 ORTHO05D007186 1.2e-160 570.1 418 71.1
Nitab4.5_0001131g0060 Nicotiana tabacum HOM05D002849 ORTHO05D007186 2.8e-160 568.9 367 77.1
unitig_744.g24607 Utricularia gibba HOM05D002849 ORTHO05D007186 8.0e-160 567.4 347 80.1
CsaV3_2G024550 Cucumis sativus L. HOM05D000201 ORTHO05D000490 3.4e-158 562.0 368 75.5
A07p41740 Brassica napus HOM05D002849 ORTHO05D007186 1.3e-157 560.1 297 88.2
Os01g0598900 Oryza sativa ssp. japonica HOM05D002849 ORTHO05D007186 1.3e-157 560.1 326 82.5
SGA_v2.0_scaffold19G08599 Striga asiatica HOM05D002849 ORTHO05D007186 2.4e-156 555.8 449 65.0
BcaC08g47111 Brassica carinata HOM05D002849 ORTHO05D007186 1.2e-155 553.5 355 77.2
DCAR_016752 Daucus carota HOM05D002022 ORTHO05D002056 1.6e-155 553.1 318 84.6
Mapoly0148s0040 Marchantia polymorpha HOM05D002849 ORTHO05D007186 2.7e-155 552.4 340 76.8
Sp5g31310 Schrenkiella parvula HOM05D002849 ORTHO05D007186 1.2e-152 543.5 355 77.2
Pp3c27_3320 Physcomitrium patens HOM05D002849 ORTHO05D007186 1.2e-150 537.0 332 75.9
SMO118G0346 Selaginella moellendorffii HOM05D002849 ORTHO05D007186 1.2e-150 537.0 332 74.4
Cfa014032 Carpinus fangiana HOM05D002849 ORTHO05D007186 5.8e-150 534.6 326 80.7
COL.COLO4_21615 Corchorus olitorius HOM05D002849 ORTHO05D007186 2.7e-147 525.8 344 77.3
Lalb_Chr23g0264921 Lupinus albus HOM05D002849 ORTHO05D007186 6.6e-146 521.2 376 70.7
BolC6t40052H Brassica oleracea HOM05D002849 ORTHO05D007186 1.1e-145 520.4 350 74.6
EL10Ac2g04301 Beta vulgaris HOM05D002849 ORTHO05D007186 7.3e-145 517.7 356 73.6
VMungo1309G1771 Vigna mungo HOM05D002849 ORTHO05D007186 2.3e-143 512.7 342 72.2
BcaC08g47284 Brassica carinata HOM05D002849 ORTHO05D007186 8.9e-143 510.8 351 73.5
CBR_g55299 Chara braunii HOM05D002849 ORTHO05D007186 3.7e-141 505.4 317 72.6
arahy.Tifrunner.gnm1.ann1.D80FKX Arachis hypogaea HOM05D002849 ORTHO05D007186 4.9e-141 505.0 356 71.3
MD15G1004300 Malus domestica HOM05D002849 ORTHO05D007186 1.4e-140 503.4 370 69.7
Cre16.g666100 Chlamydomonas reinhardtii HOM05D002849 ORTHO05D007186 3.1e-135 485.7 310 73.2
AagrBONN_evm.TU.Sc2ySwM_344.4630 Anthoceros agrestis HOM05D002849 ORTHO05D007186 2.1e-128 463.0 256 84.8
TPR.G36468 Trifolium pratense HOM05D002849 ORTHO05D007186 3.6e-128 462.2 289 76.8
AUR62013834 Chenopodium quinoa HOM05D002849 ORTHO05D007186 4.7e-128 461.8 364 66.5
SHI05854 Sapria himalayana HOM05D002849 ORTHO05D007186 4.3e-121 438.7 312 69.6
Haze_27194 Corylus avellana HOM05D002849 ORTHO05D007186 1.3e-120 437.2 332 62.3
AT1G76170 Arabidopsis thaliana HOM05D002849 ORTHO05D007186 6.9e-119 431.4 238 86.6
AUR62036771 Chenopodium quinoa HOM05D002849 ORTHO05D007186 5.4e-116 421.8 321 68.8
PRCOL_00001104 Prasinoderma coloniale HOM05D002849 ORTHO05D007186 7.1e-116 421.4 324 63.0
Solyc08g074590.2 Solanum lycopersicum HOM05D002849 ORTHO05D007186 1.6e-115 420.2 227 88.1
Sopen08g023190 Solanum pennellii HOM05D002849 ORTHO05D007186 1.6e-115 420.2 227 88.1
RcHm_v2.0_Chr6g0303961 Rosa chinensis HOM05D002849 ORTHO05D007186 4.6e-115 418.7 233 86.3
HanXRQChr17g0533361 Helianthus annuus HOM05D002849 ORTHO05D007186 6.0e-115 418.3 219 90.9
Cpa.g.sc26.233 Carica papaya HOM05D002849 ORTHO05D007186 2.3e-114 416.4 343 64.7
CARHR139450 Cardamine hirsuta HOM05D002849 ORTHO05D007186 8.7e-114 414.5 214 91.1
ATR0661G072 Amborella trichopoda HOM05D002849 ORTHO05D007186 8.1e-112 407.9 228 87.3
HPP92_024246 Vanilla planifolia HOM05D002849 ORTHO05D007186 8.1e-112 407.9 239 82.8
Nitab4.5_0000907g0040 Nicotiana tabacum HOM05D002849 ORTHO05D007186 4.9e-109 398.7 352 61.4
Peaxi162Scf00166g00641 Petunia axillaris HOM05D002849 ORTHO05D007186 1.0e-106 391.0 225 84.4
Cfa027047 Carpinus fangiana HOM05D002849 ORTHO05D007186 5.5e-100 368.6 442 46.4
TAR628G0269 Trochodendron aralioides HOM05D002849 ORTHO05D007186 1.8e-98 363.6 229 79.5
Ah.01g004180 Amaranthus hybridus HOM05D002849 ORTHO05D007186 2.7e-83 313.2 221 71.9
Psat5g001160 Pisum sativum HOM05D002849 ORTHO05D007186 3.8e-69 266.2 202 66.8
Lj9A176T24 Lonicera japonica HOM05D002849 ORTHO05D007186 5.3e-63 245.7 211 62.1
Peaxi162Scf00445g00105 Petunia axillaris HOM05D002849 ORTHO05D007186 7.2e-60 235.3 353 42.2
VMungo1309G1925 Vigna mungo HOM05D002849 ORTHO05D007186 5.7e-57 225.7 269 48.7
CARHR139440 Cardamine hirsuta HOM05D002849 ORTHO05D007186 5.4e-55 219.2 129 82.2
Peaxi162Scf00166g00633 Petunia axillaris HOM05D002849 ORTHO05D007186 4.9e-48 196.1 114 79.8
HanXRQChr17g0533371 Helianthus annuus HOM05D002849 ORTHO05D007186 6.3e-48 195.7 115 78.3
ATR0661G077 Amborella trichopoda HOM05D002849 ORTHO05D007186 2.9e-45 186.8 122 73.0
SalBow6G3808 Salvia bowleyana HOM05D002849 ORTHO05D007186 2.4e-39 167.2 101 79.2
RcHm_v2.0_Chr6g0303951 Rosa chinensis HOM05D002849 ORTHO05D007186 7.8e-38 162.2 94 78.7
Prupe.3G237200 Prunus persica HOM05D002849 ORTHO05D007186 5.0e-37 159.5 83 89.2
SpUn0523_0010 Schrenkiella parvula HOM05D002849 ORTHO05D007186 1.8e-34 151.0 117 68.4
FAN08G3136 Fragaria x ananassa HOM05D002849 ORTHO05D007186 8.6e-29 132.1 77 85.7
MELO3C004787.2 Cucumis melo HOM05D002849 ORTHO05D007186 1.8e-26 124.4 95 66.3
MELO3C012882.2 Cucumis melo HOM05D002849 ORTHO05D007186 3.5e-22 110.2 77 68.8
Gorai.007G371200 Gossypium raimondii HOM05D002849 ORTHO05D047384 2.1e-19 100.9 70 70.0
Gohir.D11G341150 Gossypium hirsutum HOM05D002849 ORTHO05D047384 1.2e-17 95.1 75 65.3
MELO3C034170.2 Cucumis melo HOM05D002849 ORTHO05D007186 1.5e-17 94.7 57 75.4
MELO3C003855.2 Cucumis melo HOM05D002849 ORTHO05D007186 1.9e-15 87.8 60 70.0
BolC5t33314H Brassica oleracea HOM05D002849 ORTHO05D024297 5.6e-12 76.3 77 53.2
C05p45940 Brassica napus HOM05D002849 ORTHO05D024297 9.6e-12 75.5 93 51.6
TAR276G0001 Trochodendron aralioides HOM05D002849 ORTHO05D051491 1.2e-11 75.1 54 68.5
AL7G13010 Arabidopsis lyrata HOM05D002849 ORTHO05D007186 2.0e-09 67.8 34 79.4
BcaB01g01492 Brassica carinata HOM05D002849 ORTHO05D027174 7.6e-09 65.9 44 72.7
Actinidia17029 Actinidia chinensis HOM05D000148 ORTHO05D000081 1.7e-08 64.7 31 87.1
A05p30360 Brassica napus HOM05D002849 ORTHO05D024297 4.6e-06 56.6 38 68.4
BraA05t21874Z Brassica rapa HOM05D002849 ORTHO05D024297 4.6e-06 56.6 38 68.4


User provided reference genes

Program Settings