Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400026525 Solanum tuberosum HOM05D006129 ORTHO05D007446 0.0e+00 1326.6 662 100.0
Solyc11g066850.3 Solanum lycopersicum HOM05D006129 ORTHO05D007446 0.0e+00 1255.4 665 94.3
Sopen11g026560 Solanum pennellii HOM05D006129 ORTHO05D007446 0.0e+00 1253.4 665 94.6
CAN.G644.34 Capsicum annuum HOM05D006129 ORTHO05D007446 0.0e+00 1203.3 653 90.8
Peaxi162Scf00789g00530 Petunia axillaris HOM05D006129 ORTHO05D007446 0.0e+00 1139.8 654 85.5
Nitab4.5_0007303g0010 Nicotiana tabacum HOM05D006129 ORTHO05D007446 0.0e+00 1118.2 656 84.9
Nitab4.5_0001453g0090 Nicotiana tabacum HOM05D006129 ORTHO05D007446 0.0e+00 1101.7 686 80.8
Dinv42121 Davidia involucrata HOM05D006129 ORTHO05D007446 5.5e-276 954.1 655 71.0
Lj5P206T15 Lonicera japonica HOM05D006129 ORTHO05D007446 6.1e-267 924.1 657 67.9
Duzib248G0151 Durio zibethinus HOM05D006129 ORTHO05D007446 1.8e-263 912.5 656 68.0
QL11p038411 Quercus lobata HOM05D006129 ORTHO05D007446 1.8e-263 912.5 652 67.2
CSS0025307 Camellia sinensis var. sinensis HOM05D006129 ORTHO05D007446 1.2e-262 909.8 655 67.6
CSS0048591 Camellia sinensis var. sinensis HOM05D006129 ORTHO05D007446 1.2e-262 909.8 655 67.6
GSVIVG01031785001 Vitis vinifera HOM05D006129 ORTHO05D007446 7.7e-262 907.1 654 65.7
Thecc.02G095400 Theobroma cacao HOM05D006129 ORTHO05D007446 1.0e-258 896.7 656 66.3
Cfa005424 Carpinus fangiana HOM05D006129 ORTHO05D007446 4.0e-258 894.8 651 65.4
Haze_01881 Corylus avellana HOM05D006129 ORTHO05D007446 5.2e-258 894.4 650 65.7
CiPaw.05G055300 Carya illinoinensis HOM05D006129 ORTHO05D007446 3.7e-256 888.3 655 66.7
TWI79G0519 Tripterygium wilfordii HOM05D006129 ORTHO05D007446 6.3e-256 887.5 653 66.0
Nn4g23272 Nelumbo nucifera HOM05D006129 ORTHO05D007446 4.5e-254 881.3 654 65.7
TWI31G0609 Tripterygium wilfordii HOM05D006129 ORTHO05D007446 5.9e-254 880.9 653 65.1
DCAR_003623 Daucus carota HOM05D006129 ORTHO05D007446 1.7e-253 879.4 663 64.3
COL.COLO4_11724 Corchorus olitorius HOM05D006129 ORTHO05D007446 5.0e-253 877.9 660 64.7
Rhsim11G0169300 Rhododendron simsii HOM05D006129 ORTHO05D007446 1.6e-251 872.8 661 64.4
vmacro02172 Vaccinium macrocarpon HOM05D006129 ORTHO05D007446 3.6e-251 871.7 654 64.7
Oeu057674.1 Olea europaea HOM05D006129 ORTHO05D007446 3.4e-249 865.1 653 65.2
Cpa.g.sc62.53 Carica papaya HOM05D006129 ORTHO05D007446 4.4e-249 864.8 649 65.3
CANSAT25G2181 Cannabis sativa HOM05D006129 ORTHO05D007446 2.4e-247 859.0 657 62.1
Gohir.D01G006000 Gossypium hirsutum HOM05D006129 ORTHO05D007446 7.0e-247 857.4 655 64.1
RcHm_v2.0_Chr6g0259211 Rosa chinensis HOM05D006129 ORTHO05D007446 4.6e-246 854.7 656 62.3
Gorai.002G007000 Gossypium raimondii HOM05D006129 ORTHO05D007446 1.3e-245 853.2 655 63.8
Aqoxy3G03484 Aquilegia oxysepala HOM05D006129 ORTHO05D007446 3.0e-245 852.0 653 63.6
Dinv23594 Davidia involucrata HOM05D006129 ORTHO05D007446 1.9e-244 849.4 655 63.5
Manes.17G094600 Manihot esculenta HOM05D006129 ORTHO05D007446 1.9e-244 849.4 656 63.1
MD10G1089000 Malus domestica HOM05D006129 ORTHO05D007446 2.5e-244 849.0 653 62.5
Gohir.A01G005900 Gossypium hirsutum HOM05D006129 ORTHO05D007446 1.2e-243 846.7 655 63.4
Atru.BG.82.p Acer truncatum HOM05D006129 ORTHO05D007446 8.0e-243 844.0 619 64.6
Potri.009G106800 Populus trichocarpa HOM05D006129 ORTHO05D007446 1.8e-242 842.8 657 63.3
Ciclev10027854m.g Citrus clementina HOM05D006129 ORTHO05D007446 2.0e-241 839.3 654 61.5
FAN27G0179 Fragaria x ananassa HOM05D006129 ORTHO05D007446 1.9e-239 832.8 657 60.0
FvH4_2g06900 Fragaria vesca HOM05D006129 ORTHO05D007446 2.4e-239 832.4 645 60.8
MELO3C026699.2 Cucumis melo HOM05D006129 ORTHO05D007446 7.0e-239 830.9 654 61.5
MSTRG.20134 Avicennia marina HOM05D006129 ORTHO05D007446 6.0e-238 827.8 653 62.0
FAN15G2181 Fragaria x ananassa HOM05D006129 ORTHO05D007446 1.3e-237 826.6 647 60.7
Lj2g0010354 Lotus japonicus HOM05D006129 ORTHO05D007446 2.3e-237 825.9 649 61.5
FAN24G2628 Fragaria x ananassa HOM05D006129 ORTHO05D007446 5.1e-237 824.7 645 60.3
Eucgr.L01320 Eucalyptus grandis HOM05D006129 ORTHO05D007446 4.3e-236 821.6 654 62.1
Prupe.8G116000 Prunus persica HOM05D006129 ORTHO05D007446 5.6e-236 821.2 643 61.7
TAR371G0476 Trochodendron aralioides HOM05D006129 ORTHO05D007446 5.6e-236 821.2 584 68.7
ClCG07G001810 Citrullus lanatus HOM05D006129 ORTHO05D007446 2.1e-235 819.3 650 60.9
Sc08g0000140 Simmondsia chinensis HOM05D006129 ORTHO05D007446 2.1e-235 819.3 650 61.1
CsaV3_3G028800 Cucumis sativus L. HOM05D006129 ORTHO05D007446 4.7e-235 818.1 658 60.2
Lsat_1_v5_gn_5_113460 Lactuca sativa HOM05D006129 ORTHO05D007446 5.2e-234 814.7 644 61.5
Sed0004701 Sechium edule HOM05D006129 ORTHO05D007446 2.0e-233 812.8 656 59.3
Medtr1g026035 Medicago truncatula HOM05D006129 ORTHO05D007446 2.6e-233 812.4 649 59.3
Migut.B00306 Erythranthe guttata HOM05D006129 ORTHO05D007446 2.2e-232 809.3 648 60.3
THA.LOC104807348 Tarenaya hassleriana HOM05D006129 ORTHO05D007446 6.4e-232 807.7 655 59.7
Actinidia12976 Actinidia chinensis HOM05D006129 ORTHO05D007446 2.4e-231 805.8 648 62.3
Ca_13480_v3 Cicer arietinum L. HOM05D006129 ORTHO05D007446 9.2e-231 803.9 649 59.3
Lalb_Chr10g0095451 Lupinus albus HOM05D006129 ORTHO05D007446 2.7e-230 802.4 649 58.6
ECA234G4125 Erigeron canadensis HOM05D006129 ORTHO05D007446 6.0e-230 801.2 644 60.1
PGR042G1055 Punica granatum HOM05D006129 ORTHO05D007446 7.8e-230 800.8 657 60.1
Glyma.20G009700 Glycine max HOM05D006129 ORTHO05D007446 1.3e-229 800.0 649 58.2
Thhalv10022548m.g Eutrema salsugineum HOM05D006129 ORTHO05D007446 1.9e-228 796.2 649 58.1
EL10Ac9g21818 Beta vulgaris HOM05D006129 ORTHO05D007446 2.5e-228 795.8 661 56.1
TPR.G26422 Trifolium pratense HOM05D006129 ORTHO05D007446 7.3e-228 794.3 649 58.2
A07p04960 Brassica napus HOM05D006129 ORTHO05D007446 1.6e-227 793.1 626 58.9
HanXRQChr10g0303221 Helianthus annuus HOM05D006129 ORTHO05D007446 1.6e-227 793.1 650 60.2
Carub.0003s2972 Capsella rubella HOM05D006129 ORTHO05D007446 3.1e-226 788.9 649 57.8
CARHR106180 Cardamine hirsuta HOM05D006129 ORTHO05D007446 6.8e-226 787.7 655 57.4
unitig_744.g24241 Utricularia gibba HOM05D006129 ORTHO05D007446 6.8e-226 787.7 655 58.0
BraA07t28289Z Brassica rapa HOM05D006129 ORTHO05D007446 1.2e-225 786.9 626 58.8
Glyma.07G178800 Glycine max HOM05D006129 ORTHO05D007446 1.2e-225 786.9 649 57.5
AL3G47590 Arabidopsis lyrata HOM05D006129 ORTHO05D007446 2.6e-225 785.8 651 57.5
Sp3g29130 Schrenkiella parvula HOM05D006129 ORTHO05D007446 1.7e-224 783.1 626 59.4
BcaB03g16332 Brassica carinata HOM05D006129 ORTHO05D007446 4.2e-223 778.5 626 58.5
BcaC06g36090 Brassica carinata HOM05D006129 ORTHO05D007446 2.1e-222 776.2 626 58.1
C07p07940 Brassica napus HOM05D006129 ORTHO05D007446 2.1e-222 776.2 626 58.1
BolC7t41212H Brassica oleracea HOM05D006129 ORTHO05D007446 2.1e-222 776.2 626 58.1
Phvul.002G308800 Phaseolus vulgaris HOM05D006129 ORTHO05D007446 1.0e-221 773.9 648 56.8
VMungo0464G0688 Vigna mungo HOM05D006129 ORTHO05D007446 2.3e-221 772.7 620 57.7
AT2G15820 Arabidopsis thaliana HOM05D006129 ORTHO05D007446 8.7e-221 770.8 663 56.4
arahy.Tifrunner.gnm1.ann1.769PPM Arachis hypogaea HOM05D006129 ORTHO05D007446 9.6e-220 767.3 650 57.5
AUR62011424 Chenopodium quinoa HOM05D006129 ORTHO05D007446 4.0e-218 761.9 626 56.7
FAN20G2787 Fragaria x ananassa HOM05D006129 ORTHO05D007446 4.9e-216 755.0 618 59.1
SGA_v2.0_scaffold58G20604 Striga asiatica HOM05D006129 ORTHO05D007446 1.1e-212 743.8 661 55.5
Aa31LG8G13380 Aethionema arabicum HOM05D006129 ORTHO05D007446 4.8e-211 738.4 631 56.1
Ah.01g006750 Amaranthus hybridus HOM05D006129 ORTHO05D007446 4.8e-211 738.4 628 55.1
TAR629G1168 Trochodendron aralioides HOM05D006129 ORTHO05D007446 4.0e-202 708.8 543 62.8
Os02g0702000 Oryza sativa ssp. japonica HOM05D006129 ORTHO05D007446 2.6e-201 706.1 638 52.5
ATR0665G475 Amborella trichopoda HOM05D006129 ORTHO05D007446 1.9e-199 699.9 655 53.1
AUR62016636 Chenopodium quinoa HOM05D006129 ORTHO05D007446 1.9e-199 699.9 573 57.6
HPP92_022045 Vanilla planifolia HOM05D006129 ORTHO05D007446 1.3e-197 693.7 653 52.1
Zm00001eb251880 Zea mays HOM05D006129 ORTHO05D007446 9.6e-196 687.6 621 53.1
Medtr0381s0010 Medicago truncatula HOM05D006129 ORTHO05D007446 1.0e-192 677.6 610 54.8
Sabra09G0081600 Salix brachista HOM05D006129 ORTHO05D007446 5.1e-189 665.2 527 63.2
Eucgr.G01504 Eucalyptus grandis HOM05D006129 ORTHO05D007446 1.5e-172 610.5 659 49.5
SEGI_31419 Sequoiadendron giganteum HOM05D006129 ORTHO05D007446 2.2e-163 580.1 649 45.5
Cc02_g18440 Coffea canephora HOM05D006129 ORTHO05D007446 1.1e-154 551.2 463 59.6
Eucgr.L00820 Eucalyptus grandis HOM05D006129 ORTHO05D007446 7.5e-148 528.5 411 62.5
CDE04G1903 Ceratophyllum demersum HOM05D006129 ORTHO05D007446 1.4e-146 524.2 601 45.8
Psat6g001360 Pisum sativum HOM05D006129 ORTHO05D007446 6.8e-141 505.4 649 42.4
Hund00318 Selenicereus undatus HOM05D006129 ORTHO05D007446 7.1e-122 442.2 325 61.8
Atru.chr5.2887 Acer truncatum HOM05D006129 ORTHO05D007446 4.2e-106 389.8 441 47.6
TAR371G0992 Trochodendron aralioides HOM05D006129 ORTHO05D007446 5.6e-103 379.4 515 43.3
QL11p038542 Quercus lobata HOM05D006129 ORTHO05D007446 1.1e-93 348.6 337 55.2
Atru.chr5.2823 Acer truncatum HOM05D006129 ORTHO05D007446 1.5e-87 328.2 441 43.8
Pp3c25_10050 Physcomitrium patens HOM05D006129 ORTHO05D007446 5.5e-82 309.7 641 31.5
Atru.chr5.2881 Acer truncatum HOM05D006129 ORTHO05D007446 3.4e-68 263.8 225 57.3
Atru.chr5.2826 Acer truncatum HOM05D006129 ORTHO05D007446 5.9e-68 263.1 249 55.8
TAR371G0058 Trochodendron aralioides HOM05D006129 ORTHO05D007446 2.5e-66 257.7 224 58.0
AagrBONN_evm.TU.Sc2ySwM_344.1734 Anthoceros agrestis HOM05D006129 ORTHO05D007446 9.7e-63 245.7 623 28.1
SMO356G0628 Selaginella moellendorffii HOM05D006129 ORTHO05D007446 1.7e-62 245.0 672 26.8
Mapoly0036s0055 Marchantia polymorpha HOM05D006129 ORTHO05D007446 1.3e-59 235.3 637 26.1
AagrBONN_evm.TU.Sc2ySwM_344.5085 Anthoceros agrestis HOM05D006129 ORTHO05D007446 1.1e-50 205.7 639 25.7
TAR629G1760 Trochodendron aralioides HOM05D006129 ORTHO05D007446 7.5e-39 166.4 91 81.3
Pp3c16_23700 Physcomitrium patens HOM05D006129 ORTHO05D007446 3.2e-34 151.0 636 24.4
Atru.chr5.2882 Acer truncatum HOM05D006129 ORTHO05D007446 1.2e-28 132.5 198 38.4
arahy.Tifrunner.gnm1.ann1.SUMB0F Arachis hypogaea HOM05D006129 ORTHO05D007446 1.3e-27 129.0 71 78.9
Cc02_g18430 Coffea canephora HOM05D006129 ORTHO05D007446 2.2e-22 111.7 60 76.7
CBR_g19584 Chara braunii HOM05D006129 ORTHO05D007446 3.1e-16 91.3 660 18.2
CBR_g8924 Chara braunii HOM05D006129 ORTHO05D007446 9.2e-13 79.7 237 24.9
Sc19g0008130 Simmondsia chinensis HOM05D002649 ORTHO05D002838 2.8e-09 68.2 271 23.6
HanXRQChr04g0108171 Helianthus annuus HOM05D001779 ORTHO05D001753 5.8e-07 60.5 201 26.4
QL11p038477 Quercus lobata HOM05D006129 ORTHO05D007446 9.8e-07 59.7 35 68.6
CANSAT01G2728 Cannabis sativa HOM05D000001 ORTHO05D000003 2.2e-06 58.5 203 27.1
ECA236G0552 Erigeron canadensis HOM05D001779 ORTHO05D001753 2.9e-06 58.2 201 25.9
CsaV3_7G026080 Cucumis sativus L. HOM05D001779 ORTHO05D001753 4.9e-06 57.4 205 25.4
Cc09_g07760 Coffea canephora HOM05D005973 ORTHO05D007285 8.3e-06 56.6 144 27.8
Lalb_Chr12g0200631 Lupinus albus HOM05D001779 ORTHO05D001753 8.3e-06 56.6 342 20.2


User provided reference genes

Program Settings