Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400001606 Solanum tuberosum HOM05D005431 ORTHO05D006762 4.2e-243 844.3 453 100.0
Solyc01g110820.4 Solanum lycopersicum HOM05D005431 ORTHO05D006762 5.2e-225 784.3 453 92.5
Sopen01g052890 Solanum pennellii HOM05D005431 ORTHO05D006762 2.0e-221 772.3 453 92.7
Peaxi162Scf00362g01188 Petunia axillaris HOM05D005431 ORTHO05D006762 4.7e-202 708.0 458 86.0
Nitab4.5_0001364g0090 Nicotiana tabacum HOM05D005431 ORTHO05D006762 3.0e-180 635.6 427 83.1
Lj1A1139T47 Lonicera japonica HOM05D005431 ORTHO05D006762 2.3e-156 556.2 450 65.6
Thecc.05G259000 Theobroma cacao HOM05D005431 ORTHO05D006762 6.2e-154 548.1 451 67.2
Dinv18088 Davidia involucrata HOM05D005431 ORTHO05D006762 5.8e-152 541.6 452 65.9
COL.COLO4_08630 Corchorus olitorius HOM05D005431 ORTHO05D006762 3.2e-150 535.8 447 65.8
Gohir.D11G249800 Gossypium hirsutum HOM05D005431 ORTHO05D006762 5.5e-150 535.0 444 66.4
CSS0010563 Camellia sinensis var. sinensis HOM05D005431 ORTHO05D006762 1.2e-149 533.9 446 65.9
Gohir.A11G240400 Gossypium hirsutum HOM05D005431 ORTHO05D006762 1.2e-149 533.9 451 64.5
GSVIVG01020933001 Vitis vinifera HOM05D005431 ORTHO05D006762 1.2e-149 533.9 464 65.5
Sc24g0002060 Simmondsia chinensis HOM05D005431 ORTHO05D006762 1.6e-149 533.5 448 65.0
Gorai.007G267600 Gossypium raimondii HOM05D005431 ORTHO05D006762 1.5e-147 526.9 444 65.8
CiPaw.10G000400 Carya illinoinensis HOM05D005431 ORTHO05D006762 7.4e-147 524.6 444 66.9
QL07p020652 Quercus lobata HOM05D005431 ORTHO05D006762 7.4e-147 524.6 456 64.0
Oeu051845.1 Olea europaea HOM05D005431 ORTHO05D006762 1.1e-145 520.8 452 63.5
CSS0005177 Camellia sinensis var. sinensis HOM05D005431 ORTHO05D006762 4.1e-145 518.8 446 65.2
Duzib177G0804 Durio zibethinus HOM05D005431 ORTHO05D006762 5.3e-145 518.5 453 65.1
Lalb_Chr14g0364381 Lupinus albus HOM05D005431 ORTHO05D006762 5.3e-145 518.5 432 66.2
Rhsim06G0113900 Rhododendron simsii HOM05D005431 ORTHO05D006762 6.9e-145 518.1 479 60.3
TWI32G0483 Tripterygium wilfordii HOM05D005431 ORTHO05D006762 1.2e-144 517.3 442 64.9
Lsat_1_v5_gn_6_37921 Lactuca sativa HOM05D005431 ORTHO05D006762 2.0e-144 516.5 442 61.5
Manes.08G148100 Manihot esculenta HOM05D005431 ORTHO05D006762 2.0e-144 516.5 446 63.0
MBI13_g30325_MAGBIO Magnolia biondii HOM05D005431 ORTHO05D006762 4.5e-144 515.4 445 64.5
TAR633G0900 Trochodendron aralioides HOM05D005431 ORTHO05D006762 5.9e-144 515.0 449 62.4
ECA233G5562 Erigeron canadensis HOM05D005431 ORTHO05D006762 1.0e-143 514.2 443 62.8
HanXRQChr02g0054501 Helianthus annuus HOM05D005431 ORTHO05D006762 1.7e-143 513.5 442 63.3
SalBow1G3497 Salvia bowleyana HOM05D005431 ORTHO05D006762 2.2e-143 513.1 453 62.9
arahy.Tifrunner.gnm1.ann1.UBW8VJ Arachis hypogaea HOM05D005431 ORTHO05D006762 6.5e-143 511.5 431 65.0
Eucgr.A02076 Eucalyptus grandis HOM05D005431 ORTHO05D006762 1.4e-142 510.4 449 65.0
Cc10_g14020 Coffea canephora HOM05D005431 ORTHO05D006762 4.2e-142 508.8 439 65.6
MSTRG.16956 Avicennia marina HOM05D005431 ORTHO05D006762 5.5e-142 508.4 439 61.0
Aqoxy6G02574 Aquilegia oxysepala HOM05D005431 ORTHO05D006762 2.1e-141 506.5 475 57.7
Prupe.6G097200 Prunus persica HOM05D005431 ORTHO05D006762 2.1e-141 506.5 441 63.5
PSO339G6142 Papaver somniferum HOM05D005431 ORTHO05D006762 1.0e-140 504.2 450 62.2
PSO384G4368 Papaver somniferum HOM05D005431 ORTHO05D006762 1.0e-140 504.2 447 63.1
MD03G1112900 Malus domestica HOM05D005431 ORTHO05D006762 1.4e-140 503.8 442 63.6
Ciclev10020067m.g Citrus clementina HOM05D005431 ORTHO05D006762 2.3e-140 503.1 442 64.9
Potri.013G054300 Populus trichocarpa HOM05D005431 ORTHO05D006762 6.7e-140 501.5 449 63.0
Glyma.19G109200 Glycine max HOM05D005431 ORTHO05D006762 8.8e-140 501.1 441 63.3
Medtr7g085290 Medicago truncatula HOM05D005431 ORTHO05D006762 8.8e-140 501.1 436 60.8
Aqoxy2G02389 Aquilegia oxysepala HOM05D005431 ORTHO05D006762 1.1e-139 500.7 467 58.2
Lj1g0019204 Lotus japonicus HOM05D005431 ORTHO05D006762 1.5e-139 500.4 436 63.1
PGR042G1130 Punica granatum HOM05D005431 ORTHO05D006762 2.5e-139 499.6 441 62.4
CANSAT78G0764 Cannabis sativa HOM05D005431 ORTHO05D006762 7.4e-139 498.0 437 62.9
Atru.chr2.1265 Acer truncatum HOM05D005431 ORTHO05D006762 2.2e-138 496.5 451 60.8
Sabra13G0049000 Salix brachista HOM05D005431 ORTHO05D006762 2.8e-138 496.1 450 62.0
Glyma.16G042800 Glycine max HOM05D005431 ORTHO05D006762 8.2e-138 494.6 437 61.8
FvH4_3g32950 Fragaria vesca HOM05D005431 ORTHO05D006762 2.4e-137 493.0 432 65.0
AUR62035802 Chenopodium quinoa HOM05D005431 ORTHO05D006762 4.1e-137 492.3 450 58.9
Os03g0326600 Oryza sativa ssp. japonica HOM05D005431 ORTHO05D006762 7.7e-136 488.0 438 61.4
Ca_08254_v3 Cicer arietinum L. HOM05D005431 ORTHO05D006762 1.4e-134 483.8 442 63.3
RcHm_v2.0_Chr5g0060221 Rosa chinensis HOM05D005431 ORTHO05D006762 1.4e-134 483.8 449 61.5
SGA_v2.0_scaffold32G13347 Striga asiatica HOM05D005431 ORTHO05D006762 1.9e-134 483.4 443 61.2
FAN11G0735 Fragaria x ananassa HOM05D005431 ORTHO05D006762 2.5e-134 483.0 423 65.0
FAN16G2474 Fragaria x ananassa HOM05D005431 ORTHO05D006762 6.1e-133 478.4 433 59.1
HPP92_006679 Vanilla planifolia HOM05D005431 ORTHO05D006762 1.4e-132 477.2 430 60.0
Phvul.001G100700 Phaseolus vulgaris HOM05D005431 ORTHO05D006762 2.8e-130 469.5 434 59.9
Zm00001eb015560 Zea mays HOM05D005431 ORTHO05D006762 1.4e-129 467.2 440 56.6
Cfa016425 Carpinus fangiana HOM05D005431 ORTHO05D006762 1.0e-127 461.1 430 62.8
AT1G09230 Arabidopsis thaliana HOM05D005431 ORTHO05D006762 5.0e-127 458.8 456 52.4
BraA06t23807Z Brassica rapa HOM05D005431 ORTHO05D006762 6.5e-127 458.4 464 53.4
CDE02G0906 Ceratophyllum demersum HOM05D005431 ORTHO05D006762 1.9e-126 456.8 436 61.2
BolC5t29482H Brassica oleracea HOM05D005431 ORTHO05D006762 3.2e-126 456.1 468 51.7
VMungo1383G2520 Vigna mungo HOM05D005431 ORTHO05D006762 7.2e-126 454.9 437 57.7
THA.LOC104805792 Tarenaya hassleriana HOM05D005431 ORTHO05D006762 9.4e-126 454.5 434 59.9
Sp1g07840 Schrenkiella parvula HOM05D005431 ORTHO05D006762 1.6e-125 453.8 453 52.3
C05p07240 Brassica napus HOM05D005431 ORTHO05D006762 6.1e-125 451.8 457 51.9
Thhalv10007645m.g Eutrema salsugineum HOM05D005431 ORTHO05D006762 8.0e-125 451.4 453 52.3
Duzib128G1128 Durio zibethinus HOM05D005431 ORTHO05D006762 3.0e-124 449.5 460 57.2
Psat3g089720 Pisum sativum HOM05D005431 ORTHO05D006762 1.1e-123 447.6 459 56.6
ATR0782G102 Amborella trichopoda HOM05D005431 ORTHO05D006762 2.0e-123 446.8 465 56.1
Haze_19398 Corylus avellana HOM05D005431 ORTHO05D006762 4.8e-122 442.2 448 59.2
TPR.G5901 Trifolium pratense HOM05D005431 ORTHO05D006762 4.8e-122 442.2 495 51.1
A06p05970 Brassica napus HOM05D005431 ORTHO05D006762 1.2e-120 437.6 458 51.5
Carub.0001s0857 Capsella rubella HOM05D005431 ORTHO05D006762 1.0e-119 434.5 451 51.9
BcaC05g24779 Brassica carinata HOM05D005431 ORTHO05D006762 7.2e-118 428.3 465 49.5
Nn7g35775 Nelumbo nucifera HOM05D005431 ORTHO05D006762 1.2e-117 427.6 469 51.6
vmacro12472 Vaccinium macrocarpon HOM05D005431 ORTHO05D006762 1.0e-116 424.5 602 46.2
AL1G19720 Arabidopsis lyrata HOM05D005431 ORTHO05D006762 4.0e-116 422.5 466 49.1
Aa31LG1G5950 Aethionema arabicum HOM05D005431 ORTHO05D006762 1.2e-115 421.0 478 47.9
Actinidia02566 Actinidia chinensis HOM05D005431 ORTHO05D006762 2.2e-114 416.8 346 66.8
arahy.Tifrunner.gnm1.ann1.H79Q9S Arachis hypogaea HOM05D005431 ORTHO05D006762 3.5e-112 409.5 431 56.1
Migut.C00530 Erythranthe guttata HOM05D005431 ORTHO05D006762 6.5e-111 405.2 321 64.2
Haze_21236 Corylus avellana HOM05D005431 ORTHO05D006762 2.7e-109 399.8 391 60.9
Cfa011866 Carpinus fangiana HOM05D005431 ORTHO05D006762 4.7e-109 399.1 385 60.5
SEGI_41626 Sequoiadendron giganteum HOM05D005431 ORTHO05D006762 2.0e-107 393.7 438 50.2
EL10Ac8g19795 Beta vulgaris HOM05D005431 ORTHO05D006762 1.3e-106 391.0 315 67.9
Sed0005030 Sechium edule HOM05D005431 ORTHO05D006762 8.3e-106 388.3 352 63.6
Cpa.g.sc594.2 Carica papaya HOM05D005431 ORTHO05D006762 4.0e-100 369.4 347 64.0
AUR62027554 Chenopodium quinoa HOM05D005431 ORTHO05D006762 1.3e-98 364.4 398 49.5
CsaV3_6G010080 Cucumis sativus L. HOM05D005431 ORTHO05D006762 1.1e-94 351.3 329 63.2
arahy.Tifrunner.gnm1.ann1.M3GFZ7 Arachis hypogaea HOM05D005431 ORTHO05D006762 3.3e-94 349.7 385 56.1
Potri.019G031700 Populus trichocarpa HOM05D005431 ORTHO05D006762 3.1e-92 343.2 312 62.8
Pp3c5_17010 Physcomitrium patens HOM05D005431 ORTHO05D006762 8.0e-85 318.5 410 45.9
SMO339G0047 Selaginella moellendorffii HOM05D005431 ORTHO05D006762 9.8e-83 311.6 394 47.2
AagrBONN_evm.TU.Sc2ySwM_228.5426 Anthoceros agrestis HOM05D005431 ORTHO05D006762 5.6e-78 295.8 329 52.3
GSVIVG01010770001 Vitis vinifera HOM05D005431 ORTHO05D006762 1.2e-77 294.7 264 66.3
ClCG02G009850 Citrullus lanatus HOM05D005431 ORTHO05D006762 6.4e-74 282.3 268 61.2
CARHR009190 Cardamine hirsuta HOM05D005431 ORTHO05D006762 1.7e-71 274.2 270 54.1
Aqoxy113s003 Aquilegia oxysepala HOM05D005431 ORTHO05D006762 3.1e-60 236.9 439 38.3
Hund08532 Selenicereus undatus HOM05D005431 ORTHO05D006762 1.3e-53 214.9 360 41.7
Mapoly0054s0019 Marchantia polymorpha HOM05D005431 ORTHO05D006762 2.4e-52 210.7 284 43.3
Rhsim03G0115400 Rhododendron simsii HOM05D005431 ORTHO05D006762 3.8e-50 203.4 332 42.8
CBR_g41665 Chara braunii HOM05D005431 ORTHO05D006762 1.4e-49 201.4 320 44.4
BcaB03g13279 Brassica carinata HOM05D005431 ORTHO05D006762 6.0e-48 196.1 192 49.5
AagrBONN_evm.TU.Sc2ySwM_117.3064__3065 Anthoceros agrestis HOM05D005431 ORTHO05D006762 3.1e-44 183.7 255 47.8
GSVIVG01010771001 Vitis vinifera HOM05D005431 ORTHO05D006762 5.1e-39 166.4 162 56.8
TPR.G5899 Trifolium pratense HOM05D000002 ORTHO05D000001 1.2e-35 155.2 166 56.6
Cpa.g.sc3384.1 Carica papaya HOM05D005431 ORTHO05D006762 1.5e-35 154.8 102 72.5
Hund08530 Selenicereus undatus HOM05D005431 ORTHO05D006762 1.5e-35 154.8 98 73.5
Phvul.004G137800 Phaseolus vulgaris HOM05D005431 ORTHO05D006762 7.1e-33 146.0 97 71.1
MELO3C013491.2 Cucumis melo HOM05D005431 ORTHO05D006762 1.1e-28 132.1 178 50.6
MBI05_g45098_MAGBIO Magnolia biondii HOM05D005431 ORTHO05D006762 3.1e-28 130.6 179 55.9
Lsat_1_v5_gn_3_133701 Lactuca sativa HOM05D005431 ORTHO05D006762 2.9e-26 124.0 127 60.6
MBI05_g33993_MAGBIO Magnolia biondii HOM05D005431 ORTHO05D006762 1.1e-22 112.1 100 56.0
TPR.G552 Trifolium pratense HOM05D005431 ORTHO05D006762 9.1e-20 102.4 103 53.4
AagrBONN_evm.TU.Sc2ySwM_228.2880 Anthoceros agrestis HOM05D005431 ORTHO05D006762 2.2e-18 97.8 115 45.2
Pp3c25_8310 Physcomitrium patens HOM05D005431 ORTHO05D006762 2.2e-18 97.8 137 42.3
SHI14717 Sapria himalayana HOM05D005431 ORTHO05D006762 2.2e-18 97.8 116 50.0
Aqoxy6G02072 Aquilegia oxysepala HOM05D005431 ORTHO05D006762 1.1e-17 95.5 340 27.4
TPR.G5921 Trifolium pratense HOM05D005431 ORTHO05D006762 3.0e-15 87.4 57 70.2
SHI14712 Sapria himalayana HOM05D000001 ORTHO05D009229 1.3e-13 82.0 45 77.8
CAN.G134.235 Capsicum annuum HOM05D005431 ORTHO05D006762 4.8e-13 80.1 56 75.0
SMO116G0263 Selaginella moellendorffii HOM05D005431 ORTHO05D006762 4.1e-12 77.0 83 44.6
C08p12570 Brassica napus HOM05D005431 ORTHO05D006762 2.6e-11 74.3 49 69.4
BolC8t48895H Brassica oleracea HOM05D005431 ORTHO05D006762 2.6e-11 74.3 49 69.4
ClCG02G009830 Citrullus lanatus HOM05D005431 ORTHO05D006762 6.5e-10 69.7 41 85.4
SGA_v2.0_scaffold612G53193 Striga asiatica HOM05D005431 ORTHO05D006762 6.5e-10 69.7 50 60.0
SEGI_17961 Sequoiadendron giganteum HOM05D005431 ORTHO05D006762 1.5e-09 68.6 111 38.7
RcHm_v2.0_Chr5g0076741 Rosa chinensis HOM05D005431 ORTHO05D006762 7.2e-09 66.2 43 69.8
SHI14714 Sapria himalayana HOM05D005431 ORTHO05D006762 1.2e-08 65.5 52 55.8
Ah.14g086750 Amaranthus hybridus HOM05D005431 ORTHO05D006762 1.0e-07 62.4 57 57.9
SHI14719 Sapria himalayana HOM05D005431 ORTHO05D006762 6.7e-07 59.7 33 81.8
Lsat_1_v5_gn_6_94960 Lactuca sativa HOM05D005431 ORTHO05D003355 2.6e-06 57.8 87 40.2


User provided reference genes

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