Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0708600 Oryza sativa ssp. japonica HOM05D000246 ORTHO05D007958 5.0e-48 194.1 99 100.0
Zm00001eb026880 Zea mays HOM05D000246 ORTHO05D007958 1.5e-31 139.4 97 69.1
Phvul.002G126800 Phaseolus vulgaris HOM05D000246 ORTHO05D007958 8.6e-24 113.6 95 61.1
VMungo1215G2022 Vigna mungo HOM05D000246 ORTHO05D007958 8.6e-24 113.6 97 58.8
CDE04G0310 Ceratophyllum demersum HOM05D000246 ORTHO05D007958 1.5e-23 112.8 99 61.6
THA.LOC104814374 Tarenaya hassleriana HOM05D000246 ORTHO05D007958 1.9e-23 112.5 95 56.8
Lalb_Chr16g0380641 Lupinus albus HOM05D000246 ORTHO05D007958 1.2e-22 109.8 95 55.8
HPP92_003405 Vanilla planifolia HOM05D000246 ORTHO05D007958 1.2e-22 109.8 94 55.3
HPP92_003426 Vanilla planifolia HOM05D000246 ORTHO05D007958 1.2e-22 109.8 94 55.3
CANSAT35G0103 Cannabis sativa HOM05D000246 ORTHO05D007958 1.6e-22 109.4 97 51.5
arahy.Tifrunner.gnm1.ann1.4RSR2I Arachis hypogaea HOM05D000246 ORTHO05D007958 6.2e-22 107.5 95 51.6
arahy.Tifrunner.gnm1.ann1.QS0FC1 Arachis hypogaea HOM05D000246 ORTHO05D007958 6.2e-22 107.5 95 51.6
Lj2g0022743 Lotus japonicus HOM05D000246 ORTHO05D007958 6.2e-22 107.5 99 52.5
Dinv09439 Davidia involucrata HOM05D000246 ORTHO05D007958 8.0e-22 107.1 97 55.7
TAR629G0378 Trochodendron aralioides HOM05D000246 ORTHO05D007958 1.1e-21 106.7 94 57.4
Ah.02g117420 Amaranthus hybridus HOM05D000246 ORTHO05D007958 1.4e-21 106.3 91 57.1
AUR62027305 Chenopodium quinoa HOM05D000246 ORTHO05D007958 1.4e-21 106.3 88 59.1
EL10Ac5g11897 Beta vulgaris HOM05D000246 ORTHO05D007958 1.8e-21 105.9 93 55.9
CSS0007497 Camellia sinensis var. sinensis HOM05D000246 ORTHO05D007958 1.8e-21 105.9 97 55.7
Nn1g09149 Nelumbo nucifera HOM05D000246 ORTHO05D007958 1.8e-21 105.9 94 56.4
FAN13G2839 Fragaria x ananassa HOM05D000246 ORTHO05D007958 3.1e-21 105.1 95 55.8
RcHm_v2.0_Chr7g0213961 Rosa chinensis HOM05D000246 ORTHO05D007958 4.0e-21 104.8 95 55.8
DCAR_004546 Daucus carota HOM05D000246 ORTHO05D007958 6.8e-21 104.0 97 53.6
CSS0002005 Camellia sinensis var. sinensis HOM05D000246 ORTHO05D007958 8.9e-21 103.6 97 53.6
ATR0829G216 Amborella trichopoda HOM05D000246 ORTHO05D007958 1.2e-20 103.2 94 53.2
CARHR030840 Cardamine hirsuta HOM05D000246 ORTHO05D007958 1.2e-20 103.2 95 53.7
Hund14322 Selenicereus undatus HOM05D000246 ORTHO05D007958 1.2e-20 103.2 98 57.1
MBI04_g30770_MAGBIO Magnolia biondii HOM05D000246 ORTHO05D007958 1.5e-20 102.8 94 53.2
Sp1g27200 Schrenkiella parvula HOM05D000246 ORTHO05D007958 2.0e-20 102.4 96 56.2
Aa31LG2G14550 Aethionema arabicum HOM05D000246 ORTHO05D007958 4.4e-20 101.3 95 54.7
Thhalv10006954m.g Eutrema salsugineum HOM05D000246 ORTHO05D007958 4.4e-20 101.3 95 52.6
Glyma.09G215200 Glycine max HOM05D000246 ORTHO05D007958 4.4e-20 101.3 95 54.7
Cpa.g.sc137.23 Carica papaya HOM05D000246 ORTHO05D007958 5.8e-20 100.9 95 52.6
Ca_25083_v3 Cicer arietinum L. HOM05D000246 ORTHO05D007958 5.8e-20 100.9 98 52.0
Actinidia03316 Actinidia chinensis HOM05D000246 ORTHO05D007958 7.5e-20 100.5 88 56.8
PSO063G2533 Papaver somniferum HOM05D000246 ORTHO05D007958 7.5e-20 100.5 94 50.0
Psat2g143000 Pisum sativum HOM05D000246 ORTHO05D007958 1.3e-19 99.8 95 52.6
CiPaw.11G104200 Carya illinoinensis HOM05D000246 ORTHO05D007958 1.7e-19 99.4 94 51.1
AL1G49670 Arabidopsis lyrata HOM05D000246 ORTHO05D007958 2.2e-19 99.0 95 52.6
BraA08t33056Z Brassica rapa HOM05D000246 ORTHO05D007958 2.2e-19 99.0 98 52.0
Carub.0001s2981 Capsella rubella HOM05D000246 ORTHO05D007958 2.9e-19 98.6 96 53.1
BcaB04g18157 Brassica carinata HOM05D000246 ORTHO05D007958 3.7e-19 98.2 99 52.5
FAN08G0258 Fragaria x ananassa HOM05D000246 ORTHO05D007958 3.7e-19 98.2 95 53.7
AT1G31360 Arabidopsis thaliana HOM05D000246 ORTHO05D007958 4.9e-19 97.8 96 53.1
Sopen08g023200 Solanum pennellii HOM05D000246 ORTHO05D007958 4.9e-19 97.8 97 49.5
PGR042G2144 Punica granatum HOM05D000246 ORTHO05D007958 6.4e-19 97.4 95 50.5
BcaC07g37758 Brassica carinata HOM05D000246 ORTHO05D007958 8.3e-19 97.1 98 51.0
BolC8t48143H Brassica oleracea HOM05D000246 ORTHO05D007958 8.3e-19 97.1 98 51.0
Solyc08g074600.4 Solanum lycopersicum HOM05D000246 ORTHO05D007958 8.3e-19 97.1 97 49.5
CAN.G195.30 Capsicum annuum HOM05D000246 ORTHO05D007958 1.1e-18 96.7 97 50.5
FvH4_5g24180 Fragaria vesca HOM05D000246 ORTHO05D007958 4.1e-18 94.7 95 52.6
FAN18G0721 Fragaria x ananassa HOM05D000246 ORTHO05D007958 4.1e-18 94.7 95 52.6
Rhsim07G0157300 Rhododendron simsii HOM05D000246 ORTHO05D007958 4.1e-18 94.7 97 52.6
A08p10580 Brassica napus HOM05D000246 ORTHO05D007958 5.4e-18 94.4 98 50.0
ClCG07G002430 Citrullus lanatus HOM05D000246 ORTHO05D007958 5.4e-18 94.4 95 43.2
MELO3C022742.2 Cucumis melo HOM05D000246 ORTHO05D007958 7.0e-18 94.0 95 43.2
Sed0002229 Sechium edule HOM05D000246 ORTHO05D007958 7.0e-18 94.0 95 45.3
Eucgr.E01207 Eucalyptus grandis HOM05D000246 ORTHO05D007958 1.6e-17 92.8 95 47.4
AUR62007433 Chenopodium quinoa HOM05D000246 ORTHO05D007958 2.0e-17 92.4 75 58.7
CsaV3_3G030270 Cucumis sativus L. HOM05D000246 ORTHO05D007958 2.0e-17 92.4 95 43.2
Lj8C409G0 Lonicera japonica HOM05D000246 ORTHO05D007958 2.7e-17 92.0 76 57.9
Nitab4.5_0001131g0040 Nicotiana tabacum HOM05D000246 ORTHO05D007958 6.0e-17 90.9 74 56.8
SHI03755 Sapria himalayana HOM05D000246 ORTHO05D007958 7.8e-17 90.5 100 47.0
TWI56G1093 Tripterygium wilfordii HOM05D000246 ORTHO05D007958 1.0e-16 90.1 116 44.8
Haze_07998 Corylus avellana HOM05D000246 ORTHO05D007958 2.3e-16 89.0 115 41.7
Potri.003G104300 Populus trichocarpa HOM05D000246 ORTHO05D007958 2.3e-16 89.0 101 48.5
Peaxi162Scf00445g00913 Petunia axillaris HOM05D000246 ORTHO05D007958 3.0e-16 88.6 74 56.8
unitig_748.g8157 Utricularia gibba HOM05D000246 ORTHO05D007958 8.6e-16 87.0 74 54.1
vmacro05182 Vaccinium macrocarpon HOM05D000246 ORTHO05D007958 8.6e-16 87.0 112 44.6
Medtr5g026590 Medicago truncatula HOM05D000246 ORTHO05D007958 5.6e-15 84.3 96 44.8
GSVIVG01036944001 Vitis vinifera HOM05D000246 ORTHO05D007958 2.1e-14 82.4 88 46.6
SEGI_13716 Sequoiadendron giganteum HOM05D000246 ORTHO05D007958 6.2e-14 80.9 98 43.9
MSTRG.11835 Avicennia marina HOM05D000246 ORTHO05D007958 1.4e-13 79.7 97 46.4
Nitab4.5_0000907g0060 Nicotiana tabacum HOM05D000246 ORTHO05D007958 1.4e-13 79.7 88 45.5
Lsat_1_v5_gn_5_59341 Lactuca sativa HOM05D000246 ORTHO05D007958 3.1e-13 78.6 96 42.7
SGA_v2.0_scaffold27G11715 Striga asiatica HOM05D000246 ORTHO05D007958 2.0e-12 75.9 95 45.3
Migut.A00506 Erythranthe guttata HOM05D000246 ORTHO05D007958 2.6e-12 75.5 94 45.7
Cfa012648 Carpinus fangiana HOM05D000246 ORTHO05D007958 5.8e-12 74.3 95 42.1
Sc23g0003460 Simmondsia chinensis HOM05D000246 ORTHO05D007958 5.8e-12 74.3 94 42.6
MD00G1078900 Malus domestica HOM05D000246 ORTHO05D007958 9.9e-12 73.6 97 45.4
Duzib205G1660 Durio zibethinus HOM05D000246 ORTHO05D007958 1.7e-11 72.8 57 56.1
ECA240G3403 Erigeron canadensis HOM05D000246 ORTHO05D007958 1.7e-11 72.8 97 40.2
TPR.G27203 Trifolium pratense HOM05D000246 ORTHO05D007958 1.7e-11 72.8 60 51.7
Oeu026041.1 Olea europaea HOM05D000246 ORTHO05D007958 2.2e-11 72.4 97 41.2
AagrBONN_evm.TU.Sc2ySwM_228.4542 Anthoceros agrestis HOM05D000246 ORTHO05D007958 1.4e-10 69.7 96 37.5
AagrBONN_evm.TU.Sc2ySwM_344.814 Anthoceros agrestis HOM05D000246 ORTHO05D007958 1.4e-10 69.7 96 38.5
Thecc.03G325100 Theobroma cacao HOM05D000246 ORTHO05D007958 2.4e-10 68.9 58 56.9
COL.COLO4_35077 Corchorus olitorius HOM05D000246 ORTHO05D007958 5.4e-10 67.8 95 41.1
SMO174G0029 Selaginella moellendorffii HOM05D000246 ORTHO05D007958 9.2e-10 67.0 88 38.6
Sabra03G0071300 Salix brachista HOM05D000246 ORTHO05D007958 1.2e-09 66.6 92 42.4
Gohir.A08G228200 Gossypium hirsutum HOM05D000246 ORTHO05D007958 7.8e-09 63.9 58 51.7
Ciclev10001056m.g Citrus clementina HOM05D000246 ORTHO05D007958 1.0e-08 63.5 60 50.0
Gorai.004G265100 Gossypium raimondii HOM05D000246 ORTHO05D007958 1.0e-08 63.5 58 51.7
Manes.17G008200 Manihot esculenta HOM05D000246 ORTHO05D007958 1.0e-08 63.5 61 49.2
PGSC0003DMG400029604 Solanum tuberosum HOM05D000246 ORTHO05D007958 2.3e-08 62.4 57 50.9
Aqoxy3G01991 Aquilegia oxysepala HOM05D000246 ORTHO05D007958 5.1e-08 61.2 106 38.7
HanXRQChr03g0082361 Helianthus annuus HOM05D000246 ORTHO05D007958 5.1e-08 61.2 93 33.3
Cc00_g05210 Coffea canephora HOM05D000246 ORTHO05D007958 8.6e-08 60.5 100 38.0
Mapoly0066s0087 Marchantia polymorpha HOM05D000246 ORTHO05D007958 1.9e-07 59.3 59 49.2
Atru.chr6.2110 Acer truncatum HOM05D000246 ORTHO05D007958 3.3e-07 58.5 36 69.4
Pp3c5_19440 Physcomitrium patens HOM05D000246 ORTHO05D007958 4.7e-06 54.7 99 33.3
CBR_g21223 Chara braunii HOM05D000246 ORTHO05D007958 6.2e-06 54.3 106 28.3


User provided reference genes

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