Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os06g0167000 Oryza sativa ssp. japonica HOM05D002341 ORTHO05D003165 2.3e-176 622.1 302 100.0
Zm00001eb375530 Zea mays HOM05D002341 ORTHO05D003165 2.5e-167 592.0 298 95.6
ClCG09G002950 Citrullus lanatus HOM05D002341 ORTHO05D003165 4.9e-163 577.8 298 92.3
CsaV3_7G032320 Cucumis sativus L. HOM05D002341 ORTHO05D003165 1.1e-162 576.6 298 91.9
Sed0003553 Sechium edule HOM05D002341 ORTHO05D003165 3.2e-162 575.1 298 91.9
MELO3C023427.2 Cucumis melo HOM05D002341 ORTHO05D003165 4.2e-162 574.7 298 91.6
Migut.D01080 Erythranthe guttata HOM05D002341 ORTHO05D003165 2.1e-161 572.4 298 91.9
SalBow6G3017 Salvia bowleyana HOM05D002341 ORTHO05D003165 3.5e-161 571.6 298 91.9
SalBow6G5900 Salvia bowleyana HOM05D002341 ORTHO05D003165 3.5e-161 571.6 298 91.9
Sed0021407 Sechium edule HOM05D002341 ORTHO05D003165 3.5e-161 571.6 298 90.6
Hund00514 Selenicereus undatus HOM05D002341 ORTHO05D003165 3.5e-161 571.6 298 91.6
SGA_v2.0_scaffold26G11346 Striga asiatica HOM05D002341 ORTHO05D003165 4.6e-161 571.2 298 91.6
CDE02G3147 Ceratophyllum demersum HOM05D002341 ORTHO05D003165 7.8e-161 570.5 298 91.3
MSTRG.9422 Avicennia marina HOM05D002341 ORTHO05D003165 3.0e-160 568.5 298 91.6
Lj3g0016754 Lotus japonicus HOM05D002341 ORTHO05D003165 3.0e-160 568.5 298 91.6
CDE09G0407 Ceratophyllum demersum HOM05D002341 ORTHO05D003165 8.7e-160 567.0 298 90.9
Phvul.005G178600 Phaseolus vulgaris HOM05D002341 ORTHO05D003165 8.7e-160 567.0 298 91.3
Nn8g39518 Nelumbo nucifera HOM05D002341 ORTHO05D003165 1.1e-159 566.6 298 90.9
Atru.chr1.2928 Acer truncatum HOM05D002341 ORTHO05D003165 1.5e-159 566.2 299 92.3
CiPaw.01G248600 Carya illinoinensis HOM05D002341 ORTHO05D003165 1.5e-159 566.2 298 90.9
ECA247G2936 Erigeron canadensis HOM05D002341 ORTHO05D003165 1.5e-159 566.2 299 92.0
MD17G1212800 Malus domestica HOM05D002341 ORTHO05D003165 1.5e-159 566.2 298 91.6
QL05p031390 Quercus lobata HOM05D002341 ORTHO05D003165 2.5e-159 565.5 298 91.3
THA.LOC104800410 Tarenaya hassleriana HOM05D002341 ORTHO05D003165 2.5e-159 565.5 298 90.3
Thecc.06G025500 Theobroma cacao HOM05D002341 ORTHO05D003165 2.5e-159 565.5 298 90.3
TPR.G37161 Trifolium pratense HOM05D002341 ORTHO05D003165 2.5e-159 565.5 298 90.6
VMungo1080G1733 Vigna mungo HOM05D002341 ORTHO05D003165 2.5e-159 565.5 298 90.6
CANSAT56G2164 Cannabis sativa HOM05D002341 ORTHO05D003165 3.3e-159 565.1 298 90.6
Psat5g302520 Pisum sativum HOM05D002341 ORTHO05D003165 3.3e-159 565.1 298 90.6
AL2G41470 Arabidopsis lyrata HOM05D002341 ORTHO05D003165 7.3e-159 563.9 298 89.9
MSTRG.4705 Avicennia marina HOM05D002341 ORTHO05D003165 7.3e-159 563.9 298 91.6
PGSC0003DMG400028736 Solanum tuberosum HOM05D002341 ORTHO05D003165 7.3e-159 563.9 298 90.3
THA.LOC104812513 Tarenaya hassleriana HOM05D002341 ORTHO05D003165 7.3e-159 563.9 298 89.9
Ah.01g020550 Amaranthus hybridus HOM05D002341 ORTHO05D003165 9.6e-159 563.5 298 90.3
Medtr2g103960 Medicago truncatula HOM05D002341 ORTHO05D003165 9.6e-159 563.5 298 90.3
Sp5g35830 Schrenkiella parvula HOM05D002341 ORTHO05D003165 9.6e-159 563.5 298 89.9
DCAR_025515 Daucus carota HOM05D002341 ORTHO05D003165 1.3e-158 563.1 298 90.9
Oeu005942.1 Olea europaea HOM05D002341 ORTHO05D003165 1.3e-158 563.1 298 90.9
Carub.0002s2745 Capsella rubella HOM05D002341 ORTHO05D003165 2.1e-158 562.4 298 89.6
ATR0800G142 Amborella trichopoda HOM05D002341 ORTHO05D003165 2.8e-158 562.0 298 90.3
Duzib160G0553 Durio zibethinus HOM05D002341 ORTHO05D003165 2.8e-158 562.0 298 89.9
Thhalv10017992m.g Eutrema salsugineum HOM05D002341 ORTHO05D003165 2.8e-158 562.0 298 89.6
Peaxi162Scf01838g00019 Petunia axillaris HOM05D002341 ORTHO05D003165 2.8e-158 562.0 298 90.6
Sc10g0008090 Simmondsia chinensis HOM05D002341 ORTHO05D003165 2.8e-158 562.0 298 90.3
BcaB06g28420 Brassica carinata HOM05D002341 ORTHO05D003165 3.6e-158 561.6 298 89.9
Gorai.009G127700 Gossypium raimondii HOM05D002341 ORTHO05D003165 3.6e-158 561.6 298 89.6
Lalb_Chr14g0373851 Lupinus albus HOM05D002341 ORTHO05D003165 4.8e-158 561.2 298 90.9
Lalb_Chr24g0395471 Lupinus albus HOM05D002341 ORTHO05D003165 4.8e-158 561.2 298 90.9
Duzib235G1417 Durio zibethinus HOM05D002341 ORTHO05D003165 6.2e-158 560.8 298 89.9
Nn2g12097 Nelumbo nucifera HOM05D002341 ORTHO05D003165 6.2e-158 560.8 298 90.6
Zm00001eb271550 Zea mays HOM05D002341 ORTHO05D003165 6.2e-158 560.8 282 95.7
Cc00_g08660 Coffea canephora HOM05D002341 ORTHO05D003165 8.1e-158 560.5 298 91.3
Eucgr.F03879 Eucalyptus grandis HOM05D002341 ORTHO05D003165 8.1e-158 560.5 298 89.6
BraA01t01116Z Brassica rapa HOM05D002341 ORTHO05D003165 1.1e-157 560.1 298 89.3
CSS0044190 Camellia sinensis var. sinensis HOM05D002341 ORTHO05D003165 1.1e-157 560.1 298 89.9
CARHR074430 Cardamine hirsuta HOM05D002341 ORTHO05D003165 1.1e-157 560.1 298 89.3
Gohir.A05G122750 Gossypium hirsutum HOM05D002341 ORTHO05D003165 1.1e-157 560.1 298 89.6
BcaNung01746 Brassica carinata HOM05D002341 ORTHO05D003165 1.4e-157 559.7 298 89.6
A04p23900 Brassica napus HOM05D002341 ORTHO05D003165 2.4e-157 558.9 298 89.6
BraA04t17913Z Brassica rapa HOM05D002341 ORTHO05D003165 2.4e-157 558.9 298 89.6
Gohir.D05G123700 Gossypium hirsutum HOM05D002341 ORTHO05D003165 3.1e-157 558.5 298 89.3
FvH4_6g29610 Fragaria vesca HOM05D002341 ORTHO05D003165 4.0e-157 558.1 299 91.0
FAN02G2239 Fragaria x ananassa HOM05D002341 ORTHO05D003165 4.0e-157 558.1 299 91.0
FAN05G4711 Fragaria x ananassa HOM05D002341 ORTHO05D003165 4.0e-157 558.1 299 91.0
FAN09G3038 Fragaria x ananassa HOM05D002341 ORTHO05D003165 4.0e-157 558.1 299 91.0
FAN14G4930 Fragaria x ananassa HOM05D002341 ORTHO05D003165 4.0e-157 558.1 299 91.0
BcaB06g28506 Brassica carinata HOM05D002341 ORTHO05D003165 5.3e-157 557.8 298 89.3
BolC4t27552H Brassica oleracea HOM05D002341 ORTHO05D003165 5.3e-157 557.8 298 89.3
Glyma.15G007100 Glycine max HOM05D002341 ORTHO05D003165 5.3e-157 557.8 298 90.6
Hma1.2p1_0017F.1_g011180 Hydrangea macrophylla HOM05D002341 ORTHO05D003165 5.3e-157 557.8 298 89.6
RcHm_v2.0_Chr2g0135211 Rosa chinensis HOM05D002341 ORTHO05D003165 5.3e-157 557.8 299 91.0
Glyma.13G366100 Glycine max HOM05D002341 ORTHO05D003165 1.2e-156 556.6 298 90.3
MD00G1072300 Malus domestica HOM05D002341 ORTHO05D003165 1.5e-156 556.2 298 90.6
Rhsim08G0212600 Rhododendron simsii HOM05D002341 ORTHO05D003165 1.5e-156 556.2 298 90.6
BcaC09g51361 Brassica carinata HOM05D002341 ORTHO05D003165 2.0e-156 555.8 298 88.9
A01p11740 Brassica napus HOM05D002341 ORTHO05D003165 2.0e-156 555.8 298 88.9
C01p13930 Brassica napus HOM05D002341 ORTHO05D003165 2.0e-156 555.8 298 88.9
BolC1t01360H Brassica oleracea HOM05D002341 ORTHO05D003165 2.0e-156 555.8 298 88.9
HanXRQChr04g0097891 Helianthus annuus HOM05D002341 ORTHO05D003165 2.0e-156 555.8 299 91.0
EL10Ac9g21877 Beta vulgaris HOM05D002341 ORTHO05D003165 2.6e-156 555.4 298 88.9
AUR62011512 Chenopodium quinoa HOM05D002341 ORTHO05D003165 2.6e-156 555.4 298 89.9
AUR62016331 Chenopodium quinoa HOM05D002341 ORTHO05D003165 2.6e-156 555.4 298 89.9
AT1G80070 Arabidopsis thaliana HOM05D002341 ORTHO05D003165 3.4e-156 555.1 298 89.6
TWI75G1620 Tripterygium wilfordii HOM05D002341 ORTHO05D003165 3.4e-156 555.1 298 89.6
Cc01_g01870 Coffea canephora HOM05D002341 ORTHO05D003165 5.8e-156 554.3 298 89.6
Sabra03G0018200 Salix brachista HOM05D002341 ORTHO05D003165 7.6e-156 553.9 298 90.3
CAN.G147.16 Capsicum annuum HOM05D002341 ORTHO05D003165 9.9e-156 553.5 298 89.3
PGR102G3099 Punica granatum HOM05D002341 ORTHO05D003165 9.9e-156 553.5 303 88.8
arahy.Tifrunner.gnm1.ann1.B7D93H Arachis hypogaea HOM05D002341 ORTHO05D003165 1.3e-155 553.1 298 89.6
arahy.Tifrunner.gnm1.ann1.DCJ864 Arachis hypogaea HOM05D002341 ORTHO05D003165 1.3e-155 553.1 298 89.6
Ca_01053_v3 Cicer arietinum L. HOM05D002341 ORTHO05D003165 2.2e-155 552.4 298 89.3
Aqoxy3G03781 Aquilegia oxysepala HOM05D002341 ORTHO05D003165 2.9e-155 552.0 298 89.9
Ciclev10024683m.g Citrus clementina HOM05D002341 ORTHO05D003165 2.9e-155 552.0 298 89.6
Eucgr.F03935 Eucalyptus grandis HOM05D002341 ORTHO05D003165 2.9e-155 552.0 298 88.3
Nitab4.5_0000366g0200 Nicotiana tabacum HOM05D002341 ORTHO05D003165 2.9e-155 552.0 298 89.3
Lj9C499G5 Lonicera japonica HOM05D002341 ORTHO05D003165 3.8e-155 551.6 298 90.3
Mapoly0019s0008 Marchantia polymorpha HOM05D002341 ORTHO05D003165 4.9e-155 551.2 300 88.7
Solyc07g008880.3 Solanum lycopersicum HOM05D002341 ORTHO05D003165 4.9e-155 551.2 298 89.3
Sopen07g004810 Solanum pennellii HOM05D002341 ORTHO05D003165 4.9e-155 551.2 298 89.3
Haze_16566 Corylus avellana HOM05D002341 ORTHO05D003165 6.4e-155 550.8 298 89.6
Cfa001956 Carpinus fangiana HOM05D002341 ORTHO05D003165 8.4e-155 550.4 298 89.3
COL.COLO4_24410 Corchorus olitorius HOM05D002341 ORTHO05D003165 1.1e-154 550.1 298 89.6
Actinidia15757 Actinidia chinensis HOM05D002341 ORTHO05D003165 1.4e-154 549.7 298 89.3
SMO145G0262 Selaginella moellendorffii HOM05D002341 ORTHO05D003165 2.4e-154 548.9 300 88.0
TAR625G0212 Trochodendron aralioides HOM05D002341 ORTHO05D003165 2.4e-154 548.9 298 89.6
Dinv38126 Davidia involucrata HOM05D002341 ORTHO05D003165 3.2e-154 548.5 298 89.3
Dinv30610 Davidia involucrata HOM05D002341 ORTHO05D003165 5.4e-154 547.7 298 88.9
SEGI_03160 Sequoiadendron giganteum HOM05D002341 ORTHO05D003165 5.4e-154 547.7 298 89.3
SEGI_15815 Sequoiadendron giganteum HOM05D002341 ORTHO05D003165 5.4e-154 547.7 298 89.3
Aa31LG3G3350 Aethionema arabicum HOM05D002341 ORTHO05D003165 7.1e-154 547.4 298 88.3
Manes.04G112400 Manihot esculenta HOM05D002341 ORTHO05D003165 9.3e-154 547.0 298 89.3
AagrBONN_evm.TU.Sc2ySwM_362.189 Anthoceros agrestis HOM05D002341 ORTHO05D003165 1.2e-153 546.6 300 87.7
PSO017G1385 Papaver somniferum HOM05D002341 ORTHO05D003165 2.7e-153 545.4 298 89.6
PSO170G3007 Papaver somniferum HOM05D002341 ORTHO05D003165 2.7e-153 545.4 298 89.6
AT4G38780 Arabidopsis thaliana HOM05D002341 ORTHO05D003165 4.6e-153 544.7 299 86.0
GSVIVG01017346001 Vitis vinifera HOM05D002341 ORTHO05D003165 4.6e-153 544.7 298 89.6
Manes.11G057400 Manihot esculenta HOM05D002341 ORTHO05D003165 7.8e-153 543.9 298 88.9
Potri.003G031900 Populus trichocarpa HOM05D002341 ORTHO05D003165 1.0e-152 543.5 298 88.6
vmacro19000 Vaccinium macrocarpon HOM05D002341 ORTHO05D003165 3.0e-152 542.0 298 88.6
Pp3c8_25090 Physcomitrium patens HOM05D002341 ORTHO05D003165 6.6e-152 540.8 299 87.3
Gohir.A10G073101 Gossypium hirsutum HOM05D002341 ORTHO05D003165 2.5e-151 538.9 298 87.9
Gohir.D10G077825 Gossypium hirsutum HOM05D002341 ORTHO05D003165 2.5e-151 538.9 298 87.9
Gorai.011G084400 Gossypium raimondii HOM05D002341 ORTHO05D003165 2.5e-151 538.9 298 87.9
Pp3c24_20910 Physcomitrium patens HOM05D002341 ORTHO05D003165 7.3e-151 537.3 299 87.0
HanXRQChr02g0033481 Helianthus annuus HOM05D002341 ORTHO05D003165 1.6e-150 536.2 299 87.6
Medtr8g011150 Medicago truncatula HOM05D002341 ORTHO05D003165 4.8e-150 534.6 298 85.6
TPR.G24585 Trifolium pratense HOM05D002341 ORTHO05D003165 2.4e-149 532.3 298 86.2
BcaB02g09158 Brassica carinata HOM05D002341 ORTHO05D003165 3.4e-148 528.5 300 84.3
Lsat_1_v5_gn_1_34320 Lactuca sativa HOM05D002341 ORTHO05D003165 2.2e-147 525.8 298 87.2
Aqoxy3G02657 Aquilegia oxysepala HOM05D002341 ORTHO05D003165 1.1e-146 523.5 298 84.9
BraA05t19698Z Brassica rapa HOM05D002341 ORTHO05D003165 1.4e-146 523.1 302 83.4
A05p07330 Brassica napus HOM05D002341 ORTHO05D003165 1.9e-146 522.7 302 83.4
C04p08780 Brassica napus HOM05D002341 ORTHO05D003165 3.2e-146 521.9 305 83.6
BolC4t22470H Brassica oleracea HOM05D002341 ORTHO05D003165 3.2e-146 521.9 305 83.6
BcaC02g12021 Brassica carinata HOM05D002341 ORTHO05D003165 9.3e-146 520.4 305 83.3
DCAR_022311 Daucus carota HOM05D002341 ORTHO05D003165 6.0e-145 517.7 298 83.6
SHI11229 Sapria himalayana HOM05D002341 ORTHO05D003165 7.9e-145 517.3 298 85.9
CBR_g48660 Chara braunii HOM05D002341 ORTHO05D003165 5.6e-143 511.1 305 81.0
Prupe.3G223400 Prunus persica HOM05D002341 ORTHO05D003165 7.4e-143 510.8 298 83.9
Thhalv10024184m.g Eutrema salsugineum HOM05D002341 ORTHO05D003165 9.6e-143 510.4 298 82.6
RcHm_v2.0_Chr2g0160631 Rosa chinensis HOM05D002341 ORTHO05D003165 1.1e-141 506.9 298 82.6
FvH4_6g43880 Fragaria vesca HOM05D002341 ORTHO05D003165 1.0e-139 500.4 298 82.6
Oeu045135.1 Olea europaea HOM05D002341 ORTHO05D003165 8.4e-139 497.3 298 82.9
C04p60530 Brassica napus HOM05D002341 ORTHO05D003165 2.3e-136 489.2 263 88.6
CARHR222110 Cardamine hirsuta HOM05D002341 ORTHO05D003165 3.9e-136 488.4 282 83.0
Prupe.3G088200 Prunus persica HOM05D002341 ORTHO05D003165 3.9e-136 488.4 298 81.5
Cre01.g016050 Chlamydomonas reinhardtii HOM05D002341 ORTHO05D003165 3.3e-135 485.3 301 77.7
ECA246G5065 Erigeron canadensis HOM05D002341 ORTHO05D003165 3.3e-135 485.3 282 82.3
MCO02G483 Micromonas commoda HOM05D002341 ORTHO05D003165 1.4e-133 479.9 302 76.5
Aqoxy180s006 Aquilegia oxysepala HOM05D002341 ORTHO05D003165 3.1e-133 478.8 275 84.7
PRCOL_00001855 Prasinoderma coloniale HOM05D002341 ORTHO05D003165 5.0e-131 471.5 317 71.9
FAN05G2070 Fragaria x ananassa HOM05D002341 ORTHO05D003165 1.6e-129 466.5 283 80.9
Os05g0163250 Oryza sativa ssp. japonica HOM05D002341 ORTHO05D003165 6.3e-126 454.5 222 98.2
AL7G40190 Arabidopsis lyrata HOM05D002341 ORTHO05D003165 2.7e-121 439.1 298 73.5
BcaC05g27955 Brassica carinata HOM05D002341 ORTHO05D003165 5.1e-120 434.9 304 70.7
Haze_26409 Corylus avellana HOM05D002341 ORTHO05D003165 1.7e-118 429.9 298 71.1
Peaxi162Scf00089g00635 Petunia axillaris HOM05D002341 ORTHO05D003165 5.9e-116 421.4 298 72.1
Cfa023699 Carpinus fangiana HOM05D002341 ORTHO05D003165 3.8e-115 418.7 305 65.6
TAR383G0801 Trochodendron aralioides HOM05D002341 ORTHO05D003165 2.3e-112 409.5 298 71.5
AL7G10650 Arabidopsis lyrata HOM05D002341 ORTHO05D003165 6.7e-112 407.9 230 83.5
Nitab4.5_0001200g0150 Nicotiana tabacum HOM05D002341 ORTHO05D003165 9.7e-103 377.5 214 85.5
SGA_v2.0_scaffold332G48967 Striga asiatica HOM05D002341 ORTHO05D003165 2.4e-101 372.9 280 68.6
BolC5t32699H Brassica oleracea HOM05D002341 ORTHO05D003165 1.9e-98 363.2 214 79.4
C05p39590 Brassica napus HOM05D002341 ORTHO05D003165 7.2e-98 361.3 214 79.0
COL.COLO4_11940 Corchorus olitorius HOM05D002341 ORTHO05D003165 1.0e-96 357.5 298 64.4
FAN14G1989 Fragaria x ananassa HOM05D002341 ORTHO05D003165 2.3e-96 356.3 235 76.2
FAN09G4661 Fragaria x ananassa HOM05D002341 ORTHO05D003165 5.0e-91 338.6 273 66.7
Medtr1g060060 Medicago truncatula HOM05D002341 ORTHO05D003165 1.7e-86 323.6 195 84.1
Medtr1g060100 Medicago truncatula HOM05D002341 ORTHO05D003165 1.7e-86 323.6 195 84.1
Nitab4.5_0002890g0050 Nicotiana tabacum HOM05D002341 ORTHO05D003165 1.1e-69 267.7 139 94.2
Nitab4.5_0007065g0030 Nicotiana tabacum HOM05D002341 ORTHO05D003165 3.3e-58 229.6 141 75.9
unitig_747.g21299 Utricularia gibba HOM05D002341 ORTHO05D003165 3.2e-53 213.0 105 99.0
HPP92_003044 Vanilla planifolia HOM05D002341 ORTHO05D003165 1.6e-52 210.7 105 97.1
unitig_747.g21300 Utricularia gibba HOM05D002341 ORTHO05D003165 2.6e-39 166.8 99 78.8
CiPaw.02G157600 Carya illinoinensis HOM05D002341 ORTHO05D003165 1.2e-20 104.8 62 77.4
HanXRQChr16g0508831 Helianthus annuus HOM05D002341 ORTHO05D003165 2.4e-16 90.5 49 77.6
MD09G1102300 Malus domestica HOM05D002341 ORTHO05D003165 7.2e-13 79.0 86 50.0
vmacro22816 Vaccinium macrocarpon HOM05D002341 ORTHO05D012275 7.2e-13 79.0 39 87.2


User provided reference genes

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