Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0762300 Oryza sativa ssp. japonica HOM05D002849 ORTHO05D007186 1.5e-214 749.2 364 100.0
Zm00001eb255730 Zea mays HOM05D002849 ORTHO05D007186 2.6e-195 685.3 362 92.5
Os01g0598900 Oryza sativa ssp. japonica HOM05D002849 ORTHO05D007186 4.5e-187 657.9 326 96.9
Prupe.1G356900 Prunus persica HOM05D002849 ORTHO05D007186 1.3e-173 613.2 365 82.2
Gohir.A05G181300 Gossypium hirsutum HOM05D002849 ORTHO05D007186 6.3e-173 610.9 353 83.9
Thecc.08G055100 Theobroma cacao HOM05D002849 ORTHO05D007186 1.8e-172 609.4 353 83.6
Nn6g31840 Nelumbo nucifera HOM05D002849 ORTHO05D007186 5.3e-172 607.8 329 88.4
Gohir.D05G184300 Gossypium hirsutum HOM05D002849 ORTHO05D007186 7.0e-172 607.4 353 83.3
Gorai.009G189800 Gossypium raimondii HOM05D002849 ORTHO05D007186 7.0e-172 607.4 353 83.3
Duzib093G2127 Durio zibethinus HOM05D002849 ORTHO05D007186 9.1e-172 607.1 353 83.3
Potri.005G083500 Populus trichocarpa HOM05D002849 ORTHO05D007186 9.1e-172 607.1 352 83.8
Migut.N03194 Erythranthe guttata HOM05D002849 ORTHO05D007186 1.2e-171 606.7 357 83.8
Manes.08G142100 Manihot esculenta HOM05D002849 ORTHO05D007186 2.6e-171 605.5 364 81.9
Sc02g0008960 Simmondsia chinensis HOM05D002849 ORTHO05D007186 4.5e-171 604.7 349 83.1
Dinv39573 Davidia involucrata HOM05D002849 ORTHO05D007186 2.2e-170 602.4 349 84.5
TWI56G0831 Tripterygium wilfordii HOM05D002849 ORTHO05D007186 2.2e-170 602.4 352 83.0
FvH4_2g37771 Fragaria vesca HOM05D002849 ORTHO05D007186 3.8e-170 601.7 360 81.4
Carub.0004s2686 Capsella rubella HOM05D002849 ORTHO05D007186 5.0e-170 601.3 350 83.4
CANSAT11G2551 Cannabis sativa HOM05D002849 ORTHO05D007186 6.5e-170 600.9 363 80.4
TAR376G0763 Trochodendron aralioides HOM05D002849 ORTHO05D007186 6.5e-170 600.9 354 81.6
Atru.chr13.175_Atru.chr13.176 Acer truncatum HOM05D002849 ORTHO05D007186 8.5e-170 600.5 364 80.5
Sp4g26340 Schrenkiella parvula HOM05D002849 ORTHO05D007186 8.5e-170 600.5 348 83.6
Aqoxy6G01855 Aquilegia oxysepala HOM05D002849 ORTHO05D007186 1.1e-169 600.1 352 83.0
Carub.0002s2306 Capsella rubella HOM05D002849 ORTHO05D007186 1.1e-169 600.1 359 81.6
AL2G36230 Arabidopsis lyrata HOM05D002849 ORTHO05D007186 1.5e-169 599.7 359 82.5
CARHR069720 Cardamine hirsuta HOM05D002849 ORTHO05D007186 1.9e-169 599.4 349 83.7
PGR083G0750 Punica granatum HOM05D002849 ORTHO05D007186 2.5e-169 599.0 365 80.0
CiPaw.08G071100 Carya illinoinensis HOM05D002849 ORTHO05D007186 3.2e-169 598.6 348 83.3
AL4G43230 Arabidopsis lyrata HOM05D002849 ORTHO05D007186 4.2e-169 598.2 349 83.4
AT2G44270 Arabidopsis thaliana HOM05D002849 ORTHO05D007186 4.2e-169 598.2 349 83.4
Ciclev10001644m.g Citrus clementina HOM05D002849 ORTHO05D007186 7.2e-169 597.4 351 82.9
THA.LOC104811452 Tarenaya hassleriana HOM05D002849 ORTHO05D007186 9.4e-169 597.0 350 82.3
Cc10_g00890 Coffea canephora HOM05D002849 ORTHO05D007186 1.2e-168 596.7 348 83.9
CSS0035799 Camellia sinensis var. sinensis HOM05D002849 ORTHO05D007186 1.6e-168 596.3 351 81.8
MELO3C011328.2 Cucumis melo HOM05D002849 ORTHO05D007186 1.6e-168 596.3 358 81.8
Thhalv10018770m.g Eutrema salsugineum HOM05D002849 ORTHO05D007186 3.6e-168 595.1 359 81.6
Hund05132 Selenicereus undatus HOM05D002849 ORTHO05D007186 4.7e-168 594.7 350 82.3
Eucgr.F03540 Eucalyptus grandis HOM05D002849 ORTHO05D007186 6.1e-168 594.3 359 81.1
A05p04470 Brassica napus HOM05D002849 ORTHO05D007186 3.0e-167 592.0 364 80.2
GSVIVG01008705001 Vitis vinifera HOM05D002849 ORTHO05D007186 4.0e-167 591.7 367 79.3
ECA246G5259 Erigeron canadensis HOM05D002849 ORTHO05D007186 5.2e-167 591.3 317 88.0
MD08G1004800 Malus domestica HOM05D002849 ORTHO05D007186 8.8e-167 590.5 365 80.0
Sed0011348 Sechium edule HOM05D002849 ORTHO05D007186 1.5e-166 589.7 359 79.9
Glyma.04G002200 Glycine max HOM05D002849 ORTHO05D007186 2.0e-166 589.3 344 82.3
PSO541G1452 Papaver somniferum HOM05D002849 ORTHO05D007186 2.0e-166 589.3 347 82.4
PSO675G6932 Papaver somniferum HOM05D002849 ORTHO05D007186 2.0e-166 589.3 348 81.6
Lj1g0000302 Lotus japonicus HOM05D002849 ORTHO05D007186 2.6e-166 589.0 322 88.5
BraA05t19423Z Brassica rapa HOM05D002849 ORTHO05D007186 4.4e-166 588.2 374 78.1
Cfa017767 Carpinus fangiana HOM05D002849 ORTHO05D007186 5.7e-166 587.8 325 87.1
HPP92_024207 Vanilla planifolia HOM05D002849 ORTHO05D007186 9.7e-166 587.0 352 82.1
Medtr3g118250 Medicago truncatula HOM05D002849 ORTHO05D007186 8.2e-165 583.9 347 82.1
C04p05180 Brassica napus HOM05D002849 ORTHO05D007186 1.1e-164 583.6 357 80.1
ClCG08G013910 Citrullus lanatus HOM05D002849 ORTHO05D007186 5.3e-164 581.3 359 80.8
Aa31LG1G25890 Aethionema arabicum HOM05D002849 ORTHO05D007186 1.6e-163 579.7 349 81.9
Lsat_1_v5_gn_3_7661 Lactuca sativa HOM05D002849 ORTHO05D007186 2.0e-163 579.3 317 87.4
BolC4t22158H Brassica oleracea HOM05D002849 ORTHO05D007186 2.7e-163 578.9 386 75.6
Ca_15284_v3 Cicer arietinum L. HOM05D002849 ORTHO05D007186 4.5e-163 578.2 351 80.3
Ca_15420_v3 Cicer arietinum L. HOM05D002849 ORTHO05D007186 4.5e-163 578.2 351 80.3
Rhsim06G0009600 Rhododendron simsii HOM05D002849 ORTHO05D007186 7.7e-163 577.4 406 73.2
MBI08_g35553_MAGBIO Magnolia biondii HOM05D002849 ORTHO05D007186 1.7e-162 576.2 361 78.7
BraA07t31703Z Brassica rapa HOM05D002849 ORTHO05D007186 1.1e-161 573.5 364 79.1
vmacro21838 Vaccinium macrocarpon HOM05D002849 ORTHO05D007186 1.5e-161 573.2 403 72.2
Phvul.009G117600 Phaseolus vulgaris HOM05D002849 ORTHO05D007186 5.5e-161 571.2 361 76.5
Haze_22739 Corylus avellana HOM05D002849 ORTHO05D007186 3.6e-160 568.5 363 78.0
QL02p013578 Quercus lobata HOM05D002849 ORTHO05D007186 1.8e-159 566.2 389 73.5
unitig_744.g24607 Utricularia gibba HOM05D002849 ORTHO05D007186 2.0e-158 562.8 317 85.2
BcaNung06602 Brassica carinata HOM05D002849 ORTHO05D007186 2.6e-158 562.4 352 79.3
FAN27G2060 Fragaria x ananassa HOM05D002849 ORTHO05D007186 5.7e-158 561.2 360 77.5
BcaB02g08806 Brassica carinata HOM05D002849 ORTHO05D007186 1.7e-157 559.7 351 79.2
FAN20G1564 Fragaria x ananassa HOM05D002849 ORTHO05D007186 2.8e-157 558.9 359 77.2
Oeu046334.1 Olea europaea HOM05D002849 ORTHO05D007186 3.7e-157 558.5 338 80.8
arahy.Tifrunner.gnm1.ann1.ID8SUW Arachis hypogaea HOM05D002849 ORTHO05D007186 4.1e-156 555.1 349 79.7
CsaV3_2G024550 Cucumis sativus L. HOM05D000201 ORTHO05D000490 2.0e-155 552.7 363 76.9
A07p41740 Brassica napus HOM05D002849 ORTHO05D007186 2.3e-154 549.3 297 88.6
SMO118G0346 Selaginella moellendorffii HOM05D002849 ORTHO05D007186 6.6e-154 547.7 321 78.8
Mapoly0148s0040 Marchantia polymorpha HOM05D002849 ORTHO05D007186 9.5e-153 543.9 347 74.1
C06p50120 Brassica napus HOM05D002849 ORTHO05D007186 2.1e-152 542.7 349 78.5
Hma1.2p1_1100F.1_g257100 Hydrangea macrophylla HOM05D002849 ORTHO05D007186 1.0e-151 540.4 349 76.8
Nitab4.5_0001131g0060 Nicotiana tabacum HOM05D002849 ORTHO05D007186 2.3e-151 539.3 368 74.7
Lj4A14T52 Lonicera japonica HOM05D002849 ORTHO05D007186 8.3e-149 530.8 402 68.2
Pp3c27_3320 Physcomitrium patens HOM05D002849 ORTHO05D007186 3.1e-148 528.9 352 73.0
DCAR_016752 Daucus carota HOM05D002022 ORTHO05D002056 4.5e-147 525.0 323 80.8
Cfa014032 Carpinus fangiana HOM05D002849 ORTHO05D007186 1.3e-146 523.5 322 80.1
BcaC08g47111 Brassica carinata HOM05D002849 ORTHO05D007186 1.9e-145 519.6 357 74.2
SGA_v2.0_scaffold19G08599 Striga asiatica HOM05D002849 ORTHO05D007186 2.8e-144 515.8 452 61.7
Sp5g31310 Schrenkiella parvula HOM05D002849 ORTHO05D007186 1.2e-142 510.4 349 75.1
CBR_g55299 Chara braunii HOM05D002849 ORTHO05D007186 6.0e-139 498.0 318 72.6
Lalb_Chr23g0264921 Lupinus albus HOM05D002849 ORTHO05D007186 6.6e-138 494.6 376 69.7
EL10Ac2g04301 Beta vulgaris HOM05D002849 ORTHO05D007186 3.3e-137 492.3 350 72.9
VMungo1309G1771 Vigna mungo HOM05D002849 ORTHO05D007186 5.6e-137 491.5 361 68.7
arahy.Tifrunner.gnm1.ann1.D80FKX Arachis hypogaea HOM05D002849 ORTHO05D007186 5.2e-135 485.0 349 71.9
COL.COLO4_21615 Corchorus olitorius HOM05D002849 ORTHO05D007186 5.2e-135 485.0 356 69.9
BolC6t40052H Brassica oleracea HOM05D002849 ORTHO05D007186 1.2e-134 483.8 357 71.1
Cre16.g666100 Chlamydomonas reinhardtii HOM05D002849 ORTHO05D007186 3.4e-134 482.3 308 72.4
BcaC08g47284 Brassica carinata HOM05D002849 ORTHO05D007186 7.0e-132 474.6 358 70.1
AagrBONN_evm.TU.Sc2ySwM_344.4630 Anthoceros agrestis HOM05D002849 ORTHO05D007186 1.2e-131 473.8 256 86.7
MD15G1004300 Malus domestica HOM05D002849 ORTHO05D007186 1.6e-131 473.4 378 66.4
TPR.G36468 Trifolium pratense HOM05D002849 ORTHO05D007186 2.5e-129 466.1 289 79.6
Haze_27194 Corylus avellana HOM05D002849 ORTHO05D007186 5.1e-122 441.8 324 63.9
PRCOL_00001104 Prasinoderma coloniale HOM05D002849 ORTHO05D007186 4.7e-120 435.3 331 65.0
AUR62013834 Chenopodium quinoa HOM05D002849 ORTHO05D007186 1.1e-119 434.1 354 64.1
SHI05854 Sapria himalayana HOM05D002849 ORTHO05D007186 8.4e-117 424.5 327 64.5
HPP92_024246 Vanilla planifolia HOM05D002849 ORTHO05D007186 6.0e-115 418.3 239 84.5
Solyc08g074590.2 Solanum lycopersicum HOM05D002849 ORTHO05D007186 2.5e-113 412.9 224 87.5
Sopen08g023190 Solanum pennellii HOM05D002849 ORTHO05D007186 2.5e-113 412.9 224 87.5
HanXRQChr17g0533361 Helianthus annuus HOM05D002849 ORTHO05D007186 5.6e-113 411.8 221 87.8
AT1G76170 Arabidopsis thaliana HOM05D002849 ORTHO05D007186 1.3e-112 410.6 242 82.2
RcHm_v2.0_Chr6g0303961 Rosa chinensis HOM05D002849 ORTHO05D007186 6.2e-112 408.3 223 86.5
Cpa.g.sc26.233 Carica papaya HOM05D002849 ORTHO05D007186 1.1e-111 407.5 338 62.4
CARHR139450 Cardamine hirsuta HOM05D002849 ORTHO05D007186 1.1e-108 397.5 212 89.6
ATR0661G072 Amborella trichopoda HOM05D002849 ORTHO05D007186 4.2e-108 395.6 217 85.7
AUR62036771 Chenopodium quinoa HOM05D002849 ORTHO05D007186 5.4e-108 395.2 324 64.5
Peaxi162Scf00166g00641 Petunia axillaris HOM05D002849 ORTHO05D007186 6.6e-106 388.3 221 84.6
Nitab4.5_0000907g0040 Nicotiana tabacum HOM05D002849 ORTHO05D007186 7.1e-100 368.2 353 58.9
TAR628G0269 Trochodendron aralioides HOM05D002849 ORTHO05D007186 7.1e-100 368.2 224 80.4
Cfa027047 Carpinus fangiana HOM05D002849 ORTHO05D007186 5.1e-98 362.1 420 46.4
Ah.01g004180 Amaranthus hybridus HOM05D002849 ORTHO05D007186 4.8e-80 302.4 223 69.5
Psat5g001160 Pisum sativum HOM05D002849 ORTHO05D007186 5.3e-71 272.3 202 69.3
Lj9A176T24 Lonicera japonica HOM05D002849 ORTHO05D007186 5.2e-58 229.2 190 62.6
VMungo1309G1925 Vigna mungo HOM05D002849 ORTHO05D007186 1.5e-57 227.6 272 50.0
Peaxi162Scf00445g00105 Petunia axillaris HOM05D002849 ORTHO05D007186 3.6e-51 206.5 145 70.3
CARHR139440 Cardamine hirsuta HOM05D002849 ORTHO05D007186 3.4e-49 199.9 132 74.2
ATR0661G077 Amborella trichopoda HOM05D002849 ORTHO05D007186 1.2e-41 174.9 122 72.1
HanXRQChr17g0533371 Helianthus annuus HOM05D002849 ORTHO05D007186 9.8e-41 171.8 121 71.9
Peaxi162Scf00166g00633 Petunia axillaris HOM05D002849 ORTHO05D007186 3.7e-40 169.9 118 73.7
Prupe.3G237200 Prunus persica HOM05D002849 ORTHO05D007186 8.0e-35 152.1 83 86.7
SalBow6G3808 Salvia bowleyana HOM05D002849 ORTHO05D007186 2.7e-30 137.1 106 68.9
SpUn0523_0010 Schrenkiella parvula HOM05D002849 ORTHO05D007186 5.9e-30 136.0 109 63.3
RcHm_v2.0_Chr6g0303951 Rosa chinensis HOM05D002849 ORTHO05D007186 2.1e-27 127.5 98 63.3
FAN08G3136 Fragaria x ananassa HOM05D002849 ORTHO05D007186 2.8e-27 127.1 72 87.5
MELO3C004787.2 Cucumis melo HOM05D002849 ORTHO05D007186 5.2e-26 122.9 74 79.7
MELO3C012882.2 Cucumis melo HOM05D002849 ORTHO05D007186 1.2e-22 111.7 77 70.1
Gorai.007G371200 Gossypium raimondii HOM05D002849 ORTHO05D047384 6.2e-19 99.4 65 66.2
Gohir.D11G341150 Gossypium hirsutum HOM05D002849 ORTHO05D047384 1.2e-17 95.1 70 62.9
MELO3C034170.2 Cucumis melo HOM05D002849 ORTHO05D007186 2.6e-17 94.0 57 75.4
MELO3C003855.2 Cucumis melo HOM05D002849 ORTHO05D007186 1.4e-15 88.2 60 70.0
TAR276G0001 Trochodendron aralioides HOM05D002849 ORTHO05D051491 3.0e-13 80.5 54 72.2
BolC5t33314H Brassica oleracea HOM05D002849 ORTHO05D024297 1.2e-11 75.1 77 54.5
C05p45940 Brassica napus HOM05D002849 ORTHO05D024297 5.2e-10 69.7 76 51.3
AL7G13010 Arabidopsis lyrata HOM05D002849 ORTHO05D007186 2.0e-09 67.8 34 82.4
BcaB01g01492 Brassica carinata HOM05D002849 ORTHO05D027174 3.7e-08 63.5 71 50.7
Actinidia17029 Actinidia chinensis HOM05D000148 ORTHO05D000081 1.4e-07 61.6 31 87.1
A05p30360 Brassica napus HOM05D002849 ORTHO05D024297 2.4e-07 60.8 38 73.7
BraA05t21874Z Brassica rapa HOM05D002849 ORTHO05D024297 2.4e-07 60.8 38 73.7
PRCOL_00007051 Prasinoderma coloniale HOM05D002604 ORTHO05D003070 2.4e-07 60.8 191 25.1


User provided reference genes

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